BAC Information

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BAC

Clone NameB6Ng01-248J22
Chromosome12 (Build37)
Map Location 41,567,448 - 41,701,357
singlet/doubletdoublet
Overlap geneDock4, LOC638487
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248J22.bB6Ng01-248J22.g
ACCGA056648GA056649
length1,1011,136
definitionB6Ng01-248J22.b B6Ng01-248J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,567,448 - 41,568,544)(41,700,219 - 41,701,357)
sequence
gaattcatggccatccacagccgtgtatggagctcaagtctagctttgac
tacatgaagccttatcagcagaaaaagaacggaaaggaaagaaaaaaagg
ccattggagctgtttggggccatacccttctagtcaaagcatcatatgtg
tacagcagtaactttttcactaactggccaatgtcttgatggcaccatct
tctacaaggaatctattctagagagccattgtgtagtttgtcctctccat
tttcctcttcccttgctgagaagatccttatccactaatacatctgcctg
ggcttggacacatagagggcatatgcagccagccctctggtttttcttag
ttaaaatgttctttctccatctacagcttcgccagcaagacacaccacat
cagtgtccccctcgcctgctggacgttctccattgaaggtacaggtctgt
cattagactggatccaaagatcggccctggttcctttttcttaaaacctt
gtcctaagctcatcaaaaggtgctttcattcctacagacaaggtcatatt
aagaagggggttgggggcaagaaaacagcgctgcttttccccttgcagag
atttacccaagaacacagatctcgtgggctacgttttgttttctattgtt
tgttttgttgtttagtagtaggaggatgcgcagcttaattctccatattt
tggcaatgagaacataacaaactatagtcaacacatttaaagcacattaa
acatacatgtgtacgcctacattgaaaaacgcccgtaatcaaggtctact
aaatgctcttctggaagttttggggctttatcatcaacctcattcatttt
tggcaaagccaaacccaacttttctctctcaatactttgcattaaagata
ctccacattacaaacatatactgaattatagaggacatggtggcataaat
gggaaaaaaaaaatccacagagtaacaggcttagccacctttacggtcca
catggtgtgacatgtaaatgcagctatttaacatctcttagcctacgatt
ccctcagagatcaggaacaatattccagttcagactgacacaagcttttc
a

gaattcattgtcccctcccccaagctaatgattacagtaagtaggctcag
atctattacagtaacttgaaggtgcagggatctgtgggagatgctctaga
taactttatgttcaaacttgatgacaactgtgtaactgagttatatgtta
tctttattattgatttgtaagattttgtatattttagatacaagtttcta
gtcaaatataggaattacaaatattttttctattctgtattttattgtgt
gtattttttttttgctctcatcaatgtactatgtcagaaacacagatgaa
catttcatgtctttctataatgttagagcttattgaaaataaattcacaa
ggttgcaccttgtagctgagcaagtttgaatgtttctgtgtgaagttctc
tgagccctgctgctggatgctgagaggcgcgctcagggaagcccctaagt
tgggacatgaaataatattccaaaccgcaaaaaggagacaaccctgactt
acaatcagcaactgtgcccatccctacatcagagagcaggcctgcaaaca
gcttctgaagagaatgcactgacacgtgatgatgtactggtgagctttgc
ttaggaagagtgggctttgctggatttttcccagaagagtctctacaaag
atgtgatgctggagacctacaggaacctcactgcaataggctataactgg
gaagatcacaatgatattgaagaatagtgtgaaaattctggaagacatag
aaaggcaaatggatggatcttgaaattatcatcctgagtgtggtagcaca
gtcctaataggacatgcatgacttctcatggagaagcgctctatatgagg
atgtcatgatgaagtttataaattcaacaaatgacaatgctaataaaaca
catgaaattacaaagtggaagtgcttggaaaagtccttatagattgctta
tcagaagggacaattatactcaaacaagagagttgtactttgcatacatc
atttaaatatgttcctgtgtctcatgtaaaggaaaaaatatctaatatga
atgcaagatgacagcataatctcccactgttctatggtaatcaatggtaa
tatacttcctacagaatccaatgtattggagagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41567448_41568544
seq2: B6Ng01-248J22.b_45_1145

seq1  GAATTCATGGCCATCCACAGCCGTGTATGGAGCTCAAGTCTAGCTTTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCCATCCACAGCCGTGTATGGAGCTCAAGTCTAGCTTTGAC  50

seq1  TACATGAAGCCTTATCAGCAGAAAAAGAACGGAAAGGAAAGAAAAAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAAGCCTTATCAGCAGAAAAAGAACGGAAAGGAAAGAAAAAAAGG  100

seq1  CCATTGGAGCTGTTTGGGGCCATACCCTTCTAGTCAAAGCATCATATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGAGCTGTTTGGGGCCATACCCTTCTAGTCAAAGCATCATATGTG  150

seq1  TACAGCAGTAACTTTTTCACTAACTGGCCAATGTCTTGATGGCACCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAGTAACTTTTTCACTAACTGGCCAATGTCTTGATGGCACCATCT  200

seq1  TCTACAAGGAATCTATTCTAGAGAGCCATTGTGTAGTTTGTCCTCTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAGGAATCTATTCTAGAGAGCCATTGTGTAGTTTGTCCTCTCCAT  250

seq1  TTTCCTCTTCCCTTGCTGAGAAGATCCTTATCCACTAATACATCTGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTCCCTTGCTGAGAAGATCCTTATCCACTAATACATCTGCCTG  300

seq1  GGCTTGGACACATAGAGGGCATATGCAGCCAGCCCTCTGGTTTTTCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGACACATAGAGGGCATATGCAGCCAGCCCTCTGGTTTTTCTTAG  350

seq1  TTAAAATGTTCTTTCTCCATCTACAGCTTCGCCAGCAAGACACACCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTTCTTTCTCCATCTACAGCTTCGCCAGCAAGACACACCACAT  400

seq1  CAGTGTCCCCCTCGCCTGCTGGACGTTCTCCATTGAAGGTACAGGTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCCCCTCGCCTGCTGGACGTTCTCCATTGAAGGTACAGGTCTGT  450

seq1  CATTAGACTGGATCCAAAGATCGGCCCTGGTTCCTTTTTCTTAAAACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGACTGGATCCAAAGATCGGCCCTGGTTCCTTTTTCTTAAAACCTT  500

seq1  GTCCTAAGCTCATCAAAAGGTGCTTTCATTCCTACAGACAAGGTCATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAGCTCATCAAAAGGTGCTTTCATTCCTACAGACAAGGTCATATT  550

seq1  AAGAAGGGGGTTGGGGGCAAGAAAACAGCGCTGCTTTTCCCCTTGCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGGGTTGGGGGCAAGAAAACAGCGCTGCTTTTCCCCTTGCAGAG  600

seq1  ATTTACCCAAGAACACAGATCTCGTGGGCTACGTTTTGTTTTCTATTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCCAAGAACACAGATCTCGTGGGCTACGTTTTGTTTTCTATTGTT  650

seq1  TGTTTTGTTGTTTAGTAGTAGGAGGATGCGCAGCTTAATTCTCCATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTGTTTAGTAGTAGGAGGATGCGCAGCTTAATTCTCCATATTT  700

seq1  TGGCAATGAGAACATAACAAACTATAGTCAACACATTTAAAGCACATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATGAGAACATAACAAACTATAGTCAACACATTTAAAGCACATTAA  750

seq1  ACATACATGTGTACGCCTACATTGAAAAACGCCCGTAATCAAGGTCTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGTGTACGCCTACATTGAAAAACGCCCGTAATCAAGGTCTACT  800

seq1  AAATGCTCTTCTGGAAGTTTTGGGGCTTTATCATCAACCTCATTCA-TTT  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAATGCTCTTCTGGAAGTTTTGGGGCTTTATCATCAACCTCATTCATTTT  850

seq1  TGGCAAAGCCAAACCCAAC-TTTCTCTCTCAATACTTTGCATTAAAGATA  898
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGGCAAAGCCAAACCCAACTTTTCTCTCTCAATACTTTGCATTAAAGATA  900

seq1  CTCCACATTACAAACATATACTGAATTATAGAGGACATGGTGGCATAAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATTACAAACATATACTGAATTATAGAGGACATGGTGGCATAAAT  950

seq1  GGGAAAAAAAAAA-CCACAGAG-AACAAGC-TAGCCACCTTAAGGGT-CA  994
      ||||||||||||| |||||||| |||| || |||||||||| | ||| ||
seq2  GGGAAAAAAAAAATCCACAGAGTAACAGGCTTAGCCACCTTTACGGTCCA  1000

seq1  CAT-GTGTGACATGTAAATGCAGGCTATTTAACATCTCTAAGCCTACAAA  1043
      ||| |||||||||||||||||| |||||||||||||||| ||||||| | 
seq2  CATGGTGTGACATGTAAATGCA-GCTATTTAACATCTCTTAGCCTACGAT  1049

seq1  TCCCTCAGGAAGATCAAGAACAATATT-CAG-TCAGACTGGCCACAAGGC  1091
      ||||||||  |||||| |||||||||| ||| ||||||| | ||||| ||
seq2  TCCCTCAG--AGATCAGGAACAATATTCCAGTTCAGACT-GACACAA-GC  1095

seq1  TTTTCA  1097
      ||||||
seq2  TTTTCA  1101


seq1: chr12_41700219_41701357
seq2: B6Ng01-248J22.g_64_1199 (reverse)

seq1  TTTCTCTCAATTACATTGGA-TCTGTTAGTGAAGTAATATTA-CATTGAT  48
      |||||||| | ||||||||| |||| ||| ||||| |||||| |||||||
seq2  TTTCTCTCCAATACATTGGATTCTG-TAG-GAAGT-ATATTACCATTGAT  47

seq1  TA-CATAGAAACAGGTTGGGAGAATTTAATGCTGTCATCTTGCATTCATA  97
      || ||||| |||||  |||||||   | ||||||||||||||||||||||
seq2  TACCATAG-AACAG--TGGGAGA---TTATGCTGTCATCTTGCATTCATA  91

seq1  TTTAGATATTTTT--CTTTACATTGAGAACACAGGAACATAATTTAATTG  145
       ||||||||||||  ||||||| |||| |||||||||||| |||||| ||
seq2  -TTAGATATTTTTTCCTTTACA-TGAG-ACACAGGAACAT-ATTTAAATG  137

seq1  ATGTATGCAAAGTACACTCCTCTTGTTTGAGTTATATTGT-CCTTCTGAT  194
      ||||||||||||||||   |||||||||||||   ||||| |||||||||
seq2  ATGTATGCAAAGTACAACTCTCTTGTTTGAGTATAATTGTCCCTTCTGAT  187

seq1  -AGC-ATCTAT-AGGACTTTTCCAAGCAC-TCCACTTTTGTAATTTCATG  240
       ||| |||||| ||||||||||||||||| ||||| ||||||||||||||
seq2  AAGCAATCTATAAGGACTTTTCCAAGCACTTCCAC-TTTGTAATTTCATG  236

seq1  TGTTTTATTAGCATTGTCATTTGTTGAATTTATAAACTTCATCATGACAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTAGCATTGTCATTTGTTGAATTTATAAACTTCATCATGACAT  286

seq1  CCTCATATAGAGCGCTTCTCCATGAGAAGTCATGCATGTCCTATTAGGAC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATATAGAGCGCTTCTCCATGAGAAGTCATGCATGTCCTATTAGGAC  336

seq1  TGTGCTACCACACTCAGGATGATAATTTCAAGATCCATCCATTTGCC-TT  389
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGCTACCACACTCAGGATGATAATTTCAAGATCCATCCATTTGCCTTT  386

seq1  CTATGTCTTCCAGAATTTTCACACTATTCTTCAATATCATTGTGATCTTC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCTTCCAGAATTTTCACACTATTCTTCAATATCATTGTGATCTTC  436

seq1  CCAGTTATAGCCTATTGCAGTGAGGTTCCTGTAGGTCTCCAGCATCACAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTATAGCCTATTGCAGTGAGGTTCCTGTAGGTCTCCAGCATCACAT  486

seq1  CTTTGTAGAGACTCTTCTGGGAAAAATCCAGCAAAGCCCACTCTTCCTAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGAGACTCTTCTGGGAAAAATCCAGCAAAGCCCACTCTTCCTAA  536

seq1  GCAAAGCTCACCAGTACATCATCACGTGTCAGTGCATTCTCTTCAGAAGC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTCACCAGTACATCATCACGTGTCAGTGCATTCTCTTCAGAAGC  586

seq1  TGTTTGCAGGCCTGCTCTCTGATGTAGGGATGGGCACAGTTGCTGATTGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCAGGCCTGCTCTCTGATGTAGGGATGGGCACAGTTGCTGATTGT  636

seq1  AAGTCAGGGTTGTCTCCTTTTTGCGGTTTGGAATATTATTTCATGTCCCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGGGTTGTCTCCTTTTTGCGGTTTGGAATATTATTTCATGTCCCA  686

seq1  ACTTAGGGGCTTCCCTGAGCGCGCCTCTCAGCATCCAGCAGCAGGGCTCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGGGCTTCCCTGAGCGCGCCTCTCAGCATCCAGCAGCAGGGCTCA  736

seq1  GAGAACTTCACACAGAAACATTCAAACTTGCTCAGCTACAAGGTGCAACC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTTCACACAGAAACATTCAAACTTGCTCAGCTACAAGGTGCAACC  786

seq1  TTGTGAATTTATTTTCAATAAGCTCTAACATTATAGAAAGACATGAAATG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATTTATTTTCAATAAGCTCTAACATTATAGAAAGACATGAAATG  836

seq1  TTCATCTGTGTTTCTGACATAGTACATTGATGAGAGCAAAAAAAAAATAC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTGTGTTTCTGACATAGTACATTGATGAGAGCAAAAAAAAAATAC  886

seq1  ACACAATAAAATACAGAATAGAAAAAATATTTGTAATTCCTATATTTGAC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATAAAATACAGAATAGAAAAAATATTTGTAATTCCTATATTTGAC  936

seq1  TAGAAACTTGTATCTAAAATATACAAAATCTTACAAATCAATAATAAAGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTTGTATCTAAAATATACAAAATCTTACAAATCAATAATAAAGA  986

seq1  TAACATATAACTCAGTTACACAGTTGTCATCAAGTTTGAACATAAAGTTA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATAACTCAGTTACACAGTTGTCATCAAGTTTGAACATAAAGTTA  1036

seq1  TCTAGAGCATCTCCCACAGATCCCTGCACCTTCAAGTTACTGTAATAGAT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGCATCTCCCACAGATCCCTGCACCTTCAAGTTACTGTAATAGAT  1086

seq1  CTGAGCCTACTTACTGTAATCATTAGCTTGGGGGAGGGGACAATGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCTACTTACTGTAATCATTAGCTTGGGGGAGGGGACAATGAATTC  1136


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