BAC Information

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BAC

Clone NameB6Ng01-248J24
Chromosome12 (Build37)
Map Location 41,567,448 - 41,701,357
singlet/doubletdoublet
Overlap geneDock4, LOC638487
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248J24.bB6Ng01-248J24.g
ACCGA056652GA056653
length1,1101,146
definitionB6Ng01-248J24.b B6Ng01-248J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,567,448 - 41,568,554)(41,700,201 - 41,701,357)
sequence
gaattcatggccatccacagccgtgtatggagctcaagtctagctttgac
tacatgaagccttatcagcagaaaaagaacggaaaggaaagaaaaaaagg
ccattggagctgtttggggccatacccttctagtcaaagcatcatatgtg
tacagcagtaactttttcactaactggccaatgtcttgatggcaccatct
tctacaaggaatctattctagagagccattgtgtagtttgtcctctccat
tttcctcttcccttgctgagaagatccttatccactaatacatctgcctg
ggcttggacacatagagggcatatgcagccagccctctggtttttcttag
ttaaaatgttctttctccatctacagcttcgccagcaagacacaccacat
cagtgtccccctcgcctgctggacgttctccattgaaggtacaggtctgt
cattagactggatccaaagatcggccctggttcctttttcttaaaacctt
gtcctaagctcatcaaaaggtgctttcattcctacagacaaggtcatatt
aagaagggggttgggggcaagaaaacagcgctgcttttccccttgcagag
atttacccaagaacacagatctcgtgggctacgttttgttttctattgtt
tgttttgttgtttagtagtaggaggatgcgcagcttaattctccatattt
tggcaatgagaacataacaaactatagtcaacacatttaaagcacattaa
acatacatgtgtacgcctacattgaaaaacgcccgtaatcaaggtctact
aaatgctcttctggaagttttggggctttatcatcaacctcattcatttt
ggcaaagccaaacccaactttctctctcaatactttgcattaaagatact
ccacattacaacatatacttgaattatagaggacatggtggcataatggg
aaaaaaaaaaccacagaagacaagcttaggctaccttagggtcaccatgt
gtgacatgtaaatgcaaggctaattgacatctctaagctaacaatccctt
caggagatcaggaaccattatttcagtcagacctggccacaagcttttca
gcacactgga
gaattcattgtcccctcccccaagctaatgattacagtaagtaggctcag
atctattacagtaacttgaaggtgcagggatctgtgggagatgctctaga
taactttatgttcaaacttgatgacaactgtgtaactgagttatatgtta
tctttattattgatttgtaagattttgtatattttagatacaagtttcta
gtcaaatataggaattacaaatattttttctattctgtattttattgtgt
gtattttttttttgctctcatcaatgtactatgtcagaaacacagatgaa
catttcatgtctttctataatgttagagcttattgaaaataaattcacaa
ggttgcaccttgtagctgagcaagtttgaatgtttctgtgtgaagttctc
tgagccctgctgctggatgctgagaggcgcgctcagggaagcccctaagt
tgggacatgaaataatattccaaaccgcaaaaaggagacaaccctgactt
acaatcagcaactgtgcccatccctacatcagagagcaggcctgcaaaca
gcttctgaagagaatgcactgacacgtgatgatgtactggtgagctttgc
ttaggaagagtgggctttgctggatttttcccagaagagtctctacaaag
atgtgatgctggagacctacaggaacctcactgcaataggctataactgg
gaagatcacaatgatattgaagaatagtgtgaaaattctggaagacatag
aaagcaaatggatggatcttgaaattatcatcctgagtgtggtagcacag
tcctaataggacatgcatgacttctcatggagaagcgctctatatgagga
tgtcatgatgaagtttataaattcacaaaatgacaatgctataaacacat
ggaaattacaaaagtgggagtgcttggaaaagtcctatagatgctatcag
aagggacaaatatactcaaacagaggagtgtacttgcatacatccattaa
atatgtcctgtgttctcaatgtaagaaaaaatatctaatatggattgcca
ggatgacaggcatgattctcccactggtttctatggaatcatgtaatatt
acctcactacgatcagtattgagagacatagcctgccttttctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41567448_41568554
seq2: B6Ng01-248J24.b_48_1157

seq1  GAATTCATGGCCATCCACAGCCGTGTATGGAGCTCAAGTCTAGCTTTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCCATCCACAGCCGTGTATGGAGCTCAAGTCTAGCTTTGAC  50

seq1  TACATGAAGCCTTATCAGCAGAAAAAGAACGGAAAGGAAAGAAAAAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAAGCCTTATCAGCAGAAAAAGAACGGAAAGGAAAGAAAAAAAGG  100

seq1  CCATTGGAGCTGTTTGGGGCCATACCCTTCTAGTCAAAGCATCATATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGAGCTGTTTGGGGCCATACCCTTCTAGTCAAAGCATCATATGTG  150

seq1  TACAGCAGTAACTTTTTCACTAACTGGCCAATGTCTTGATGGCACCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAGTAACTTTTTCACTAACTGGCCAATGTCTTGATGGCACCATCT  200

seq1  TCTACAAGGAATCTATTCTAGAGAGCCATTGTGTAGTTTGTCCTCTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAGGAATCTATTCTAGAGAGCCATTGTGTAGTTTGTCCTCTCCAT  250

seq1  TTTCCTCTTCCCTTGCTGAGAAGATCCTTATCCACTAATACATCTGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTCCCTTGCTGAGAAGATCCTTATCCACTAATACATCTGCCTG  300

seq1  GGCTTGGACACATAGAGGGCATATGCAGCCAGCCCTCTGGTTTTTCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGACACATAGAGGGCATATGCAGCCAGCCCTCTGGTTTTTCTTAG  350

seq1  TTAAAATGTTCTTTCTCCATCTACAGCTTCGCCAGCAAGACACACCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTTCTTTCTCCATCTACAGCTTCGCCAGCAAGACACACCACAT  400

seq1  CAGTGTCCCCCTCGCCTGCTGGACGTTCTCCATTGAAGGTACAGGTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCCCCTCGCCTGCTGGACGTTCTCCATTGAAGGTACAGGTCTGT  450

seq1  CATTAGACTGGATCCAAAGATCGGCCCTGGTTCCTTTTTCTTAAAACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGACTGGATCCAAAGATCGGCCCTGGTTCCTTTTTCTTAAAACCTT  500

seq1  GTCCTAAGCTCATCAAAAGGTGCTTTCATTCCTACAGACAAGGTCATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAGCTCATCAAAAGGTGCTTTCATTCCTACAGACAAGGTCATATT  550

seq1  AAGAAGGGGGTTGGGGGCAAGAAAACAGCGCTGCTTTTCCCCTTGCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGGGTTGGGGGCAAGAAAACAGCGCTGCTTTTCCCCTTGCAGAG  600

seq1  ATTTACCCAAGAACACAGATCTCGTGGGCTACGTTTTGTTTTCTATTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCCAAGAACACAGATCTCGTGGGCTACGTTTTGTTTTCTATTGTT  650

seq1  TGTTTTGTTGTTTAGTAGTAGGAGGATGCGCAGCTTAATTCTCCATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTGTTTAGTAGTAGGAGGATGCGCAGCTTAATTCTCCATATTT  700

seq1  TGGCAATGAGAACATAACAAACTATAGTCAACACATTTAAAGCACATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATGAGAACATAACAAACTATAGTCAACACATTTAAAGCACATTAA  750

seq1  ACATACATGTGTACGCCTACATTGAAAAACGCCCGTAATCAAGGTCTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGTGTACGCCTACATTGAAAAACGCCCGTAATCAAGGTCTACT  800

seq1  AAATGCTCTTCTGGAAGTTTTGGGGCTTTATCATCAACCTCATTCATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCTTCTGGAAGTTTTGGGGCTTTATCATCAACCTCATTCATTTT  850

seq1  GGCAAAGCCAAACCCAACTTTCTCTCTCAATACTTTGCATTAAAGATACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGCCAAACCCAACTTTCTCTCTCAATACTTTGCATTAAAGATACT  900

seq1  CCACATTACAAACATATAC-TGAATTATAGAGGACATGGTGGCATAAATG  949
      ||||||||| ||||||||| ||||||||||||||||||||||||| ||||
seq2  CCACATTAC-AACATATACTTGAATTATAGAGGACATGGTGGCAT-AATG  948

seq1  GGAAAAAAAAAACCACAGAGAACAAGCT--AGCCACCTTAAGGGTCA-CA  996
      |||||||||||||||||||  |||||||   || ||||| ||||||| ||
seq2  GGAAAAAAAAAACCACAGAAGACAAGCTTAGGCTACCTT-AGGGTCACCA  997

seq1  TGTGTGACATGTAAATGC-AGGCTATTTAACATCTCTAAGCCTACAAATC  1045
      |||||||||||||||||| |||||| || ||||||||||||  ||||  |
seq2  TGTGTGACATGTAAATGCAAGGCTAATTGACATCTCTAAGCTAACAATCC  1047

seq1  CCTCAGGAAGATCAAGAACAAT--ATTCAGTCAGA-CTGGCCACAAGGCT  1092
      | ||||| |||||| |||| ||   |||||||||| |||||||||| |||
seq2  CTTCAGG-AGATCAGGAACCATTATTTCAGTCAGACCTGGCCACAA-GCT  1095

seq1  TTTCAGCACACTGGA  1107
      |||||||||||||||
seq2  TTTCAGCACACTGGA  1110

seq1: chr12_41700201_41701357
seq2: B6Ng01-248J24.g_66_1211 (reverse)

seq1  CCTAGAAAAAGCAGCTAATTTCTCTCAATTACATTGGATCTGTTAGTGAA  50
      ||||||||| ||||   || |||||||| |||    ||||   |||||| 
seq2  CCTAGAAAAGGCAGGCTATGTCTCTCAA-TAC---TGATC--GTAGTGAG  44

seq1  GTAATATTACATTGATTACATAGAAACAGGTTGGGAGAATTTAATG-CTG  99
      ||||||||||| ||||| |||||||||  | ||||||||  | ||| |||
seq2  GTAATATTACA-TGATTCCATAGAAACCAG-TGGGAGAA--TCATGCCTG  90

seq1  TCATCTTG--CATTCATATTTAGATATTTTTCTTTACATTGAGAACACAG  147
      ||||| ||   || |||| ||||||||||||  |||||||||||||||||
seq2  TCATCCTGGCAATCCATA-TTAGATATTTTTTCTTACATTGAGAACACAG  139

seq1  GAACATAATTTAATTGATGTATGCAAAGTACACTCCTCTTGTTTGAGTTA  197
      | |||| ||||||| ||||||||| ||||||||||||| |||||||| ||
seq2  G-ACAT-ATTTAATGGATGTATGC-AAGTACACTCCTC-TGTTTGAG-TA  184

seq1  TA-TTGT-CCTTCTGATAGCATCTATAGGACTTTTCCAAGCACT-CCACT  244
      || |||| |||||||||||||||||||||||||||||||||||| |||||
seq2  TATTTGTCCCTTCTGATAGCATCTATAGGACTTTTCCAAGCACTCCCACT  234

seq1  TTTGTAATTT-CATGTGTTTTATTAGCATTGTCATTTGTTGAATTTATAA  293
      |||||||||| |||||||||   ||||||||||||||  |||||||||||
seq2  TTTGTAATTTCCATGTGTTT--ATAGCATTGTCATTTTGTGAATTTATAA  282

seq1  ACTTCATCATGACATCCTCATATAGAGCGCTTCTCCATGAGAAGTCATGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATCATGACATCCTCATATAGAGCGCTTCTCCATGAGAAGTCATGC  332

seq1  ATGTCCTATTAGGACTGTGCTACCACACTCAGGATGATAATTTCAAGATC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTATTAGGACTGTGCTACCACACTCAGGATGATAATTTCAAGATC  382

seq1  CATCCATTTGCCTTCTATGTCTTCCAGAATTTTCACACTATTCTTCAATA  443
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTTGCTTTCTATGTCTTCCAGAATTTTCACACTATTCTTCAATA  432

seq1  TCATTGTGATCTTCCCAGTTATAGCCTATTGCAGTGAGGTTCCTGTAGGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTGATCTTCCCAGTTATAGCCTATTGCAGTGAGGTTCCTGTAGGT  482

seq1  CTCCAGCATCACATCTTTGTAGAGACTCTTCTGGGAAAAATCCAGCAAAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCATCACATCTTTGTAGAGACTCTTCTGGGAAAAATCCAGCAAAG  532

seq1  CCCACTCTTCCTAAGCAAAGCTCACCAGTACATCATCACGTGTCAGTGCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCTTCCTAAGCAAAGCTCACCAGTACATCATCACGTGTCAGTGCA  582

seq1  TTCTCTTCAGAAGCTGTTTGCAGGCCTGCTCTCTGATGTAGGGATGGGCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCAGAAGCTGTTTGCAGGCCTGCTCTCTGATGTAGGGATGGGCA  632

seq1  CAGTTGCTGATTGTAAGTCAGGGTTGTCTCCTTTTTGCGGTTTGGAATAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTGATTGTAAGTCAGGGTTGTCTCCTTTTTGCGGTTTGGAATAT  682

seq1  TATTTCATGTCCCAACTTAGGGGCTTCCCTGAGCGCGCCTCTCAGCATCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATGTCCCAACTTAGGGGCTTCCCTGAGCGCGCCTCTCAGCATCC  732

seq1  AGCAGCAGGGCTCAGAGAACTTCACACAGAAACATTCAAACTTGCTCAGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGGGCTCAGAGAACTTCACACAGAAACATTCAAACTTGCTCAGC  782

seq1  TACAAGGTGCAACCTTGTGAATTTATTTTCAATAAGCTCTAACATTATAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGTGCAACCTTGTGAATTTATTTTCAATAAGCTCTAACATTATAG  832

seq1  AAAGACATGAAATGTTCATCTGTGTTTCTGACATAGTACATTGATGAGAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATGAAATGTTCATCTGTGTTTCTGACATAGTACATTGATGAGAG  882

seq1  CAAAAAAAAAATACACACAATAAAATACAGAATAGAAAAAATATTTGTAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAATACACACAATAAAATACAGAATAGAAAAAATATTTGTAA  932

seq1  TTCCTATATTTGACTAGAAACTTGTATCTAAAATATACAAAATCTTACAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATATTTGACTAGAAACTTGTATCTAAAATATACAAAATCTTACAA  982

seq1  ATCAATAATAAAGATAACATATAACTCAGTTACACAGTTGTCATCAAGTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAATAAAGATAACATATAACTCAGTTACACAGTTGTCATCAAGTT  1032

seq1  TGAACATAAAGTTATCTAGAGCATCTCCCACAGATCCCTGCACCTTCAAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATAAAGTTATCTAGAGCATCTCCCACAGATCCCTGCACCTTCAAG  1082

seq1  TTACTGTAATAGATCTGAGCCTACTTACTGTAATCATTAGCTTGGGGGAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTAATAGATCTGAGCCTACTTACTGTAATCATTAGCTTGGGGGAG  1132

seq1  GGGACAATGAATTC  1157
      ||||||||||||||
seq2  GGGACAATGAATTC  1146