BAC Information

Click to search

BAC

Clone NameB6Ng01-249K04
Chromosome12 (Build37)
Map Location 6,831,060 - 6,980,662
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042095, LOC672098, LOC100043137, LOC238049, LOC100042118
Downstream geneLOC668380, EG668388
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249K04.bB6Ng01-249K04.g
ACCGA057403GA057404
length1,0361,123
definitionB6Ng01-249K04.b B6Ng01-249K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,831,060 - 6,831,651)(6,979,525 - 6,980,662)
sequence
gaattcttccactactgatgtgtggggttcaatgtgtgatttaaacttta
gtaaataatgtttttctgtttttgttttgttttgttttttccaatctggt
gaatggaacacagaatctgtccaatccaatagtacgggaattgagactgc
attaattagggaagcagaaaacccggcctgatcaggggcacaagtccctt
ctggtctggtcagcactggggtagctagggtgcggagtcggctgacaccc
gccagctacgcacaatacccgccacaggatcttaagacctctggtgagtg
gaacacagcatctgctccaatctaatcgctctggacctgagactacatta
attagggaagcagaaaacccagcctgatcaggggcacaagtcccttccag
tccatgccagcacagaggtaccttgggagtggagtctgcggacaatcata
aggtatacacaagacccgccacggcatcttaagacctctgtgagtggatc
acaacttctgccaggaggcaggttcgaacaccagatatctgggcaccttc
cttgcaagaggagagcctacctgcagagtatactctgaacactgaaactc
aggagagatctagcctcccaggtctgctgataaaggctaacataatcacc
tgaggaacaagatctaaccagagacaactacaaaaactaactccagagat
taccagatggcgaattaccagaaacgtaagaattttactagcagaaacca
agaccactcaccatcatcagaacgcagcactcccaccccacccagtcctg
gacaccccaacatacctgaaaaattagacccggatttaaaatcatatctc
atgatgatggtagaggacatcaagaaggactttaataactcacttaagaa
atacaagggaacactgctaaacaggtagaagacattaagaggaagcacaa
aatcccttaaagaattgcaagaaaacacgaccaaacagtgatgggattga
taaacatacagacctaaaagggagtagacactataa

gaattctcatgtaatttgggaacctgactggcataatgtaagcaatacac
caaatccacaacaaaaacagccattacatccatgtcaaccggaagggatt
ggttttgtttggagcaatttcagtgatccctagttaacacagcgctggct
ttcagaacacctcactgaaacttcttaatttagtaaacactatggatcaa
aaattttatttttgttattgagaaaaataaatttttattttagatttttt
tctctaaaagttagcaggtcagtcagggaaaaaaaaattaaatatggaga
aatatttaggcagaagctcctcgtggagtggcatcaggattaagtatagc
ttgtataagcacctgagaaaggatgggctttcagacaggttttcgaagga
gataaatcttgaactctgtaagggaattaagtccacaagggttcctgtgg
actgagtatgggaaagcagtaggacctcgatgggagagaagagggagcag
aagcccactctgcccagttcaaaggctgcagtcttgggagttatttaaaa
tgtaagtgagcaccatgaactgcgatgtgtatatttattggataaacagc
atgctcaagaagtgacacagagtggaagttaaagtatacacaatgaataa
gtatatggatgaatgggaagaggtggacttttcagcttgtaatgacctcc
ctataggtccttaccactacatgaccagatactaagcatctatgatctga
cataaggaacagttgaccaagtctggctgttctgtgatttatttccaatt
tgtctacttaccagatagttggccttgcactattggttatagcaacagtg
ttccccttgcctttagcatctctgggataaataatatacacctctcacta
tttctgtgaatatgcatcaggcagggctggcaaatgttcaatttcgagac
attataacttgttattgaaattaggcacactagaagatactgacctagaa
ataatgtctttctacagtgatctcattgataggtgaaacagtttaaatta
gatagatctattatggaacatcactatagatttgtgatgcgttcctgaat
atacagagaatgtggtcctgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_6831060_6831651
seq2: B6Ng01-249K04.b_44_635

seq1  GAATTCTTCCACTACTGATGTGTGGGGTTCAATGTGTGATTTAAACTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCACTACTGATGTGTGGGGTTCAATGTGTGATTTAAACTTTA  50

seq1  GTAAATAATGTTTTTCTGTTTTTGTTTTGTTTTGTTTTTTCCAATCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAATGTTTTTCTGTTTTTGTTTTGTTTTGTTTTTTCCAATCTGGT  100

seq1  GAATGGAACACAGAATCTGTCCAATCCAATAGTACGGGAATTGAGACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAACACAGAATCTGTCCAATCCAATAGTACGGGAATTGAGACTGC  150

seq1  ATTAATTAGGGAAGCAGAAAACCCGGCCTGATCAGGGGCACAAGTCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTAGGGAAGCAGAAAACCCGGCCTGATCAGGGGCACAAGTCCCTT  200

seq1  CTGGTCTGGTCAGCACTGGGGTAGCTAGGGTGCGGAGTCGGCTGACACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTGGTCAGCACTGGGGTAGCTAGGGTGCGGAGTCGGCTGACACCC  250

seq1  GCCAGCTACGCACAATACCCGCCACAGGATCTTAAGACCTCTGGTGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTACGCACAATACCCGCCACAGGATCTTAAGACCTCTGGTGAGTG  300

seq1  GAACACAGCATCTGCTCCAATCTAATCGCTCTGGACCTGAGACTACATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGCATCTGCTCCAATCTAATCGCTCTGGACCTGAGACTACATTA  350

seq1  ATTAGGGAAGCAGAAAACCCAGCCTGATCAGGGGCACAAGTCCCTTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGAAGCAGAAAACCCAGCCTGATCAGGGGCACAAGTCCCTTCCAG  400

seq1  TCCATGCCAGCACAGAGGTACCTTGGGAGTGGAGTCTGCGGACAATCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCAGCACAGAGGTACCTTGGGAGTGGAGTCTGCGGACAATCATA  450

seq1  AGGTATACACAAGACCCGCCACGGCATCTTAAGACCTCTGTGAGTGGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATACACAAGACCCGCCACGGCATCTTAAGACCTCTGTGAGTGGATC  500

seq1  ACAACTTCTGCCAGGAGGCAGGTTCGAACACCAGATATCTGGGCACCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTCTGCCAGGAGGCAGGTTCGAACACCAGATATCTGGGCACCTTC  550

seq1  CTTGCAAGAGGAGAGCCTACCTGCAGAGTATACTCTGAACAC  592
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAGAGGAGAGCCTACCTGCAGAGTATACTCTGAACAC  592


seq1: chr12_6979525_6980662
seq2: B6Ng01-249K04.g_65_1187 (reverse)

seq1  AAACAGGAACCACA-TCTCTGTATATATCAGGAACGGCCATCACAATACT  49
      ||||||| |||||| ||||||||||| |||||||||  ||||||||  ||
seq2  AAACAGG-ACCACATTCTCTGTATAT-TCAGGAACG--CATCACAAATCT  46

seq1  ATAGTGATTGTTTCCATAAATTAGAATCTATCTAATTTAAACTGTTTCAC  99
      ||||||||   ||||||||  ||| |||||||||||||||||||||||||
seq2  ATAGTGAT--GTTCCATAA--TAG-ATCTATCTAATTTAAACTGTTTCAC  91

seq1  CTTATCAATGAGATTCACTTGTAGAAAGACATTATTTCTAGGTCAGTTAT  149
      | ||||||||||| |||| ||||||||||||||||||||||||||| |||
seq2  C-TATCAATGAGA-TCAC-TGTAGAAAGACATTATTTCTAGGTCAG-TAT  137

seq1  CTTTCCTAGTGTGCCTAATTTCAATAACAAGTTATAATGTCTCGAAATTG  199
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTT--CTAGTGTGCCTAATTTCAATAACAAGTTATAATGTCTCGAAATTG  185

seq1  AAACATTTGCCAGCCCTGCCTGATGCATATTCACAGAAATAGTGAGAGGT  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AACATTTGCCAGCCCTGCCTGATGCATATTCACAGAAATAGTGAGAGGT  234

seq1  GTATATTATTTATCCCAGAGATGCTAAAGGCAAGGGGAACACTGTTGCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTATTTATCCCAGAGATGCTAAAGGCAAGGGGAACACTGTTGCTA  284

seq1  TAACCAATAGTGCAAGGCCAACTATCTGGTAAGTAGACAAATTGGAAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAATAGTGCAAGGCCAACTATCTGGTAAGTAGACAAATTGGAAATA  334

seq1  AATCACAGAACAGCCAGACTTGGTCAACTGTTCCTTATGTCAGATCATAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGAACAGCCAGACTTGGTCAACTGTTCCTTATGTCAGATCATAG  384

seq1  ATGCTTAGTATCTGGTCATGTAGTGGTAAGGACCTATAGGGAGGTCATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAGTATCTGGTCATGTAGTGGTAAGGACCTATAGGGAGGTCATTA  434

seq1  CAAGCTGAAAAGTCCACCTCTTCCCATTCATCCATATACTTATTCATTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGAAAAGTCCACCTCTTCCCATTCATCCATATACTTATTCATTGT  484

seq1  GTATACTTTAACTTCCACTCTGTGTCACTTCTTGAGCATGCTGTTTATCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTTTAACTTCCACTCTGTGTCACTTCTTGAGCATGCTGTTTATCC  534

seq1  AATAAATATACACATCGCAGTTCATGGTGCTCACTTACATTTTAAATAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATACACATCGCAGTTCATGGTGCTCACTTACATTTTAAATAAC  584

seq1  TCCCAAGACTGCAGCCTTTGAACTGGGCAGAGTGGGCTTCTGCTCCCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGACTGCAGCCTTTGAACTGGGCAGAGTGGGCTTCTGCTCCCTCT  634

seq1  TCTCTCCCATCGAGGTCCTACTGCTTTCCCATACTCAGTCCACAGGAACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCATCGAGGTCCTACTGCTTTCCCATACTCAGTCCACAGGAACC  684

seq1  CTTGTGGACTTAATTCCCTTACAGAGTTCAAGATTTATCTCCTTCGAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGACTTAATTCCCTTACAGAGTTCAAGATTTATCTCCTTCGAAAA  734

seq1  CCTGTCTGAAAGCCCATCCTTTCTCAGGTGCTTATACAAGCTATACTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGAAAGCCCATCCTTTCTCAGGTGCTTATACAAGCTATACTTAA  784

seq1  TCCTGATGCCACTCCACGAGGAGCTTCTGCCTAAATATTTCTCCATATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGCCACTCCACGAGGAGCTTCTGCCTAAATATTTCTCCATATTT  834

seq1  AATTTTTTTTTCCCTGACTGACCTGCTAACTTTTAGAGAAAAAAATCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTTCCCTGACTGACCTGCTAACTTTTAGAGAAAAAAATCTAA  884

seq1  AATAAAAATTTATTTTTCTCAATAACAAAAATAAAATTTTTGATCCATAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATTTATTTTTCTCAATAACAAAAATAAAATTTTTGATCCATAG  934

seq1  TGTTTACTAAATTAAGAAGTTTCAGTGAGGTGTTCTGAAAGCCAGCGCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTAAATTAAGAAGTTTCAGTGAGGTGTTCTGAAAGCCAGCGCTG  984

seq1  TGTTAACTAGGGATCACTGAAATTGCTCCAAACAAAACCAATCCCTTCCG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACTAGGGATCACTGAAATTGCTCCAAACAAAACCAATCCCTTCCG  1034

seq1  GTTGACATGGATGTAATGGCTGTTTTTGTTGTGGATTTGGTGTATTGCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATGGATGTAATGGCTGTTTTTGTTGTGGATTTGGTGTATTGCTT  1084

seq1  ACATTATGCCAGTCAGGTTCCCAAATTACATGAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGCCAGTCAGGTTCCCAAATTACATGAGAATTC  1123


| Home | SequenceCutter | Blast | Download |