BAC Information

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BAC

Clone NameB6Ng01-249M08
Chromosome12 (Build37)12 (Build37)
Map Location 24,434,699 - 24,435,82423,457,648 - 23,457,778
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668680, LOC100042895, LOC100043435, EG628081, LOC100042903, LOC100043440, EG668518, LOC100043445, LOC668697, LOC100042923, LOC677338, EG668701
Downstream geneLOC668471, LOC668703, LOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249M08.bB6Ng01-249M08.g
ACCGA057503GA057504
length1,127133
definitionB6Ng01-249M08.b B6Ng01-249M08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,434,699 - 24,435,824)(23,457,648 - 23,457,778)
sequence
gaattcccatgagcatgtctgttctgcccatgactcagctgtatctgtga
gtaaggaagagagttagttaatacttagttgtgctcaggctcttgggtga
ggctctgtggggcttgtgtcttctggggcaaagtcaagaagcagccccac
atgtcagtgtccacacatgctgccatgggtgttctgagaaagcctattca
tcagtttagtctagactgacagcacctcctctcctgcctcctcacttgga
aaatgtcactgagcttgctttgtggggaaagcaggagctgggaatttcct
aggtctgtgccactttgtgcggttgaaggggtcctgaatcttttctgatg
atggcaataaagacatgttgctgtcttggattacccacttctgagtcttg
ttactatggaagaaaggttctttctcagctgcaagctcaaaagataaaac
cgtgtccaacagaggccccaaaaggaggaaggaaggacactcaggactta
atatggaggcaccaattgcgctgtggaagacaggtgatgaaattgcttca
catcaattctggtttctgttttaaaacatttggtttgttgctatgaaaac
aaatatatggaaagaatgcaggtcggtgacacgaaaggcatttcttcttc
ctaactttagatgctgtttccctctaccctttgacaagtcaatggccagc
agaggacacagacctgggagggcagcgaatgccctttctggagaagtggc
ctcagcccaagctcacaaggtgtgtgtgtggagggtcagggtgcaatttt
aaaccaaataatgaactgctgtagggagtctactcattaaaacacactct
tttgtactgatgaaaccctaggctacaggggacaggaggagtcatggaga
cactgggacaagggaacagtctttatgggttctgtgtgactcaccaggct
gtcttctggagacaggggggacacactgtcttggtggcaggagagtctca
ctgtgactggccgttctatttaaagctcaatatgaacacaagaggaaaca
attggtcccataaccatagtctctgtatgtcactgcctacgaaccatcta
attggttcattaaaggtctggcctctg
tatggagtgaaaaaaatatcccaaaaaggaagacaggaagagagagagag
agagagagagagagagagagagagagagagagagggagagagagagggag
agagagagagagagatagagtcagagatagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_24434699_24435824
seq2: B6Ng01-249M08.b_45_1171

seq1  GAATTCCCATGAGCATGTCTGTTCTGCCCATGACTCAGCTGTATCTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGAGCATGTCTGTTCTGCCCATGACTCAGCTGTATCTGTGA  50

seq1  GTAAGGAAGAGAGTTAGTTAATACTTAGTTGTGCTCAGGCTCTTGGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAAGAGAGTTAGTTAATACTTAGTTGTGCTCAGGCTCTTGGGTGA  100

seq1  GGCTCTGTGGGGCTTGTGTCTTCTGGGGCAAAGTCAAGAAGCAGCCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTGGGGCTTGTGTCTTCTGGGGCAAAGTCAAGAAGCAGCCCCAC  150

seq1  ATGTCAGTGTCCACACATGCTGCCATGGGTGTTCTGAGAAAGCCTATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGTGTCCACACATGCTGCCATGGGTGTTCTGAGAAAGCCTATTCA  200

seq1  TCAGTTTAGTCTAGACTGACAGCACCTCCTCTCCTGCCTCCTCACTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTAGTCTAGACTGACAGCACCTCCTCTCCTGCCTCCTCACTTGGA  250

seq1  AAATGTCACTGAGCTTGCTTTGTGGGGAAAGCAGGAGCTGGGAATTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCACTGAGCTTGCTTTGTGGGGAAAGCAGGAGCTGGGAATTTCCT  300

seq1  AGGTCTGTGCCACTTTGTGCGGTTGAAGGGGTCCTGAATCTTTTCTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGTGCCACTTTGTGCGGTTGAAGGGGTCCTGAATCTTTTCTGATG  350

seq1  ATGGCAATAAAGACATGTTGCTGTCTTGGATTACCCACTTCTGAGTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAATAAAGACATGTTGCTGTCTTGGATTACCCACTTCTGAGTCTTG  400

seq1  TTACTATGGAAGAAAGGTTCTTTCTCAGCTGCAAGCTCAAAAGATAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATGGAAGAAAGGTTCTTTCTCAGCTGCAAGCTCAAAAGATAAAAC  450

seq1  CGTGTCCAACAGAGGCCCCAAAAGGAGGAAGGAAGGACACTCAGGACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCAACAGAGGCCCCAAAAGGAGGAAGGAAGGACACTCAGGACTTA  500

seq1  ATATGGAGGCACCAATTGCGCTGTGGAAGACAGGTGATGAAATTGCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGGCACCAATTGCGCTGTGGAAGACAGGTGATGAAATTGCTTCA  550

seq1  CATCAATTCTGGTTTCTGTTTTAAAACATTTGGTTTGTTGCTATGAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATTCTGGTTTCTGTTTTAAAACATTTGGTTTGTTGCTATGAAAAC  600

seq1  AAATATATGGAAAGAATGCAGGTCGGTGACACGAAAGGCATTTCTTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATGGAAAGAATGCAGGTCGGTGACACGAAAGGCATTTCTTCTTC  650

seq1  CTAACTTTAGATGCTGTTTCCCTCTACCCTTTGACAAGTCAATGGCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTTAGATGCTGTTTCCCTCTACCCTTTGACAAGTCAATGGCCAGC  700

seq1  AGAGGACACAGACCTGGGAGGGCAGCGAATGCCCTTTCTGGAGAAGTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACACAGACCTGGGAGGGCAGCGAATGCCCTTTCTGGAGAAGTGGC  750

seq1  CTCAGCCCAAGCTCACAAGGTGTGTGTGTGGAGGGTCA-GGTGCAATTTT  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCAGCCCAAGCTCACAAGGTGTGTGTGTGGAGGGTCAGGGTGCAATTTT  800

seq1  AAACCAAATAATGAACTGCTGTAGGGAGTCTACTCATTAAAACACACTC-  848
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAACCAAATAATGAACTGCTGTAGGGAGTCTACTCATTAAAACACACTCT  850

seq1  TTTGTACTGATGAAACCCTAGGCTACAGGGGACAGGAGGAGTCATGGAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACTGATGAAACCCTAGGCTACAGGGGACAGGAGGAGTCATGGAGA  900

seq1  CACT-GGACAAGGGAACAGTCTTTAT-GGTTCTGTGTGACTCACCAGGCT  946
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACTGGGACAAGGGAACAGTCTTTATGGGTTCTGTGTGACTCACCAGGCT  950

seq1  GTCTTCTGGAGACAGGGGGACAACACTGTCTTGGTGGCAGGGAGAGTCTC  996
      |||||||||||||||||||   ||||||||||||||||| ||||||||||
seq2  GTCTTCTGGAGACAGGGGGGACACACTGTCTTGGTGGCA-GGAGAGTCTC  999

seq1  ACTGTGACTGGCCG-TCTATTTAAAGCTCATAAGGAAACACAAAGAGGAA  1045
      |||||||||||||| |||||||||||||||  | | ||||| ||||||||
seq2  ACTGTGACTGGCCGTTCTATTTAAAGCTCAATATG-AACAC-AAGAGGAA  1047

seq1  ACAATT-GTCCCAT-ACCATAGTCTTCTGTAATGTCACTG-CTACAGACC  1092
      |||||| ||||||| ||||||||| ||||| ||||||||| |||| || |
seq2  ACAATTGGTCCCATAACCATAGTC-TCTGT-ATGTCACTGCCTAC-GAAC  1094

seq1  CTTCTACATGGGTCTCATTAAAGGTCTGG-CTCTG  1126
      | |||| || ||| ||||||||||||||| |||||
seq2  CATCTA-ATTGGT-TCATTAAAGGTCTGGCCTCTG  1127

seq1: chr12_23457648_23457778
seq2: B6Ng01-249M08.g_74_206

seq1  TATGGAGTGAAAAAAATATCCCAAAAAGGAAGACAGGAAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGTGAAAAAAATATCCCAAAAAGGAAGACAGGAAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGGGAG  100

seq1  AGAGAGAGAGAGAGAGAGAG--AGAGAGAGAGA  131
      ||||||||||||||| ||||  ||||| |||||
seq2  AGAGAGAGAGAGAGATAGAGTCAGAGATAGAGA  133