BAC Information

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BAC

Clone NameB6Ng01-249M10
Chromosome12 (Build37)
Map Location 10,411,896 - 10,412,994
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC633030, LOC100042238, Osr1, LOC382567, Nt5c1b, Rdh14
Downstream geneLOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249M10.bB6Ng01-249M10.g
ACCGA057507GA057508
length1,2101,107
definitionB6Ng01-249M10.b B6Ng01-249M10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacttgcttccagccatctactgctgcacagggagctgacccttt
atagtttgcctcctcagtacggttcccttggagaaaactaaactttcatt
tttcaagccttatcagttggtgatgccttctgggttagggacaggagcat
gtgccttcatttcttttgagcttcaggacccaatttgttgccagccctat
gtgtgggtcctcagtctatgtgaattcatatgtgtgtctatcctgttgta
ttttggaggccttgtttctttggtagctgctaatccttctagaccttata
ctcttcccatctcttcttctacagggtccctgacccatgggtggaggaat
ttgaccaagatctcccatttagggtggagtattccaagggctctaattct
ctccatatctttctgattgtggatctctgtatttttcccttctgttgcaa
aagaaagcctctcttaaggtggctgatcaaggcaccgatctagtagtata
acagaatattgttaagagtcatttagttagtacattccagtaaaacaact
ggtattttgttttactctcggtctacaggctatccagtttcaggttctgg
gtcacccagcagcattgcttatgagtttattttgtgaggcctaaaggcaa
tcagatgggctggttactctcacaagctttgtgccactactgcactagtg
tattttgctggcatgacaccattgtagatcaaaagatttgtggctcagtt
ggtgtttatgtttctcctttaataccttacagagtatatttctctaccaa
agacactagtgtataggagtaaagactccatgtaggcactagctggactt
gcccatattcaatgagttatgtcttcagaaatgaggccttgacatcagtt
tgtggaaaggagccctttttcttggcaacagcctgggttgttggggatcc
catgggacccctttgatcaacaactcaataaatggaccaagtttaggtat
ttaagcctcatttgatgatatgagatgccagtggggactctatctcccct
tatttattatagcattatattcagatcgttcattatatattatgtactat
atatgatattgtaccttaggcagcttattttgaaactgatactttacgta
aactcactgctatagcatgtagtgcactgggcagcgtgataagggtctga
gtatctctga
gaattccagtttcttattcacaacagaagaatggaaattccttgcatact
acattgcttttagtattagagttgatacaggaagatctctgttagaaagg
gttttatattagggagagatttcaccagtgagtttgatcacatgctggtg
ttttgttattaagtggggatctttggtctagaggttcacaaagaatgtgt
tattattgtaagaagaataaaaaatcctcaaatttttcatctattatttc
atatggaaattcattaagaggtcggataaatgcacactagttattgtaga
aataattatgtcggccttcgatcgtcctgtttaatcaagcaaaagcagac
tgctccctgcaacactttagatcccaagaaactacaagatggagggaacc
aataatttgactgacacagagaaggatgcagaggaattggtggaaggatt
caaaatacttttgcagcttgtgtgaattctcttgtaagacttctccatat
acattcctgcctccctcatgctaactctcaattaccactgaaatagttac
caaaatgacgaaggttgttcccgtctactgttgaattgggttgttgcaga
gaacccatttgtgcctattccagccagaaggactctctactcttttcaga
cactgagtactgaacactaaagtattgtttagagtataaaacacaccgct
ttgctaccagggcaacttgttcctgagcatcagtgaggtggtgtgcattt
tacctttcaggttactgattaactaataaataactcaatattaaaaaacg
taacccagtgttttataattgacttatggtcacttgtgatagaataaagg
ggacagaaatgactcagtcaagtgcctgacattcatgggagtaaacaatg
ttccactctttctgggcctttgactcacttcttaccttgatttctctgct
tttatttgaagcagagaagagaacaaatattccctgatgattccattatg
acgtcttttctttatcgactctcaatacttcaaaccactatggtggggat
attcccaccactagtcattctacgatcctcagcttcattacctgtgaggc
agcctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10411896_10412994
seq2: B6Ng01-249M10.g_65_1171 (reverse)

seq1  ACAGGCTTCCCTCACA-GTAATGAGGCTGA-GATCGTAGAATGACTAGTG  48
      |||||| | ||||||| ||||||| ||||| |||||||||||||||||||
seq2  ACAGGC-TGCCTCACAGGTAATGAAGCTGAGGATCGTAGAATGACTAGTG  49

seq1  GTGG--ATATTCCCA-CATAAGTGTTTGAAGTATTGAGAGTCGATAA--G  93
      ||||  |||| |||| ||||   ||||||||||||||||||||||||   
seq2  GTGGGAATATCCCCACCATAGTGGTTTGAAGTATTGAGAGTCGATAAAGA  99

seq1  AAAGACGTTCATAATGGAATCATCA-GGAATATTTTGTTCTTCTTCTCTG  142
      ||||||| ||||||||||||||||| |||||| ||||||| |||||||||
seq2  AAAGACG-TCATAATGGAATCATCAGGGAATA-TTTGTTC-TCTTCTCTG  146

seq1  CTTCAAATAAAAGCAGAGAAATCAAGGTAAGAAGTGAGTCAAAGG-CCAG  191
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTCAAATAAAAGCAGAGAAATCAAGGTAAGAAGTGAGTCAAAGGCCCAG  196

seq1  AAAGAGTGGAACATTG-TTACT-CCATGAATGTCAGGCACTTGACTGAGT  239
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  AAAGAGTGGAACATTGTTTACTCCCATGAATGTCAGGCACTTGACTGAGT  246

seq1  CATTTCTGTCCCC-TTATTCTATCACAAGTGACCATAAGTCAATTATAAA  288
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGTCCCCTTTATTCTATCACAAGTGACCATAAGTCAATTATAAA  296

seq1  ACACTGGGTTACGTTTTTTAATATTGAGTTATTTATTAGTTAATCAGTAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGGTTACGTTTTTTAATATTGAGTTATTTATTAGTTAATCAGTAA  346

seq1  CCTGAAAGGTAAAATGCACACCACCTCACTGATGCTCAGGAACAAGTTGC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGGTAAAATGCACACCACCTCACTGATGCTCAGGAACAAGTTGC  396

seq1  CCTGGTAGCAAAGCGGTGTGTTTTATACTCTAAACAATACTTTAGTGTTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGCAAAGCGGTGTGTTTTATACTCTAAACAATACTTTAGTGTTC  446

seq1  AGTACTCAGTGTCTGAAAAGAGTAGAGAGTCCTTCTGGCTGGAATAGGCA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTCAGTGTCTGAAAAGAGTAGAGAGTCCTTCTGGCTGGAATAGGCA  496

seq1  CAAATGGGTTCTCTGCAACAACCCAATTCAACAGTAGACGGGAACAACCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGGTTCTCTGCAACAACCCAATTCAACAGTAGACGGGAACAACCT  546

seq1  TCGTCATTTTGGTAACTATTTCAGTGGTAATTGAGAGTTAGCATGAGGGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCATTTTGGTAACTATTTCAGTGGTAATTGAGAGTTAGCATGAGGGA  596

seq1  GGCAGGAATGTATATGGAGAAGTCTTACAAGAGAATTCACACAAGCTGCA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAATGTATATGGAGAAGTCTTACAAGAGAATTCACACAAGCTGCA  646

seq1  AAAGTATTTTGAATCCTTCCACCAATTCCTCTGCATCCTTCTCTGTGTCA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTTGAATCCTTCCACCAATTCCTCTGCATCCTTCTCTGTGTCA  696

seq1  GTCAAATTATTGGTTCCCTCCATCTTGTAGTTTCTTGGGATCTAAAGTGT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATTATTGGTTCCCTCCATCTTGTAGTTTCTTGGGATCTAAAGTGT  746

seq1  TGCAGGGAGCAGTCTGCTTTTGCTTGATTAAACAGGACGATCGAAGGCCG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGAGCAGTCTGCTTTTGCTTGATTAAACAGGACGATCGAAGGCCG  796

seq1  ACATAATTATTTCTACAATAACTAGTGTGCATTTATCCGACCTCTTAATG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTATTTCTACAATAACTAGTGTGCATTTATCCGACCTCTTAATG  846

seq1  AATTTCCATATGAAATAATAGATGAAAAATTTGAGGATTTTTTATTCTTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCATATGAAATAATAGATGAAAAATTTGAGGATTTTTTATTCTTC  896

seq1  TTACAATAATAACACATTCTTTGTGAACCTCTAGACCAAAGATCCCCACT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATAATAACACATTCTTTGTGAACCTCTAGACCAAAGATCCCCACT  946

seq1  TAATAACAAAACACCAGCATGTGATCAAACTCACTGGTGAAATCTCTCCC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACAAAACACCAGCATGTGATCAAACTCACTGGTGAAATCTCTCCC  996

seq1  TAATATAAAACCCTTTCTAACAGAGATCTTCCTGTATCAACTCTAATACT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAAAACCCTTTCTAACAGAGATCTTCCTGTATCAACTCTAATACT  1046

seq1  AAAAGCAATGTAGTATGCAAGGAATTTCCATTCTTCTGTTGTGAATAAGA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAATGTAGTATGCAAGGAATTTCCATTCTTCTGTTGTGAATAAGA  1096

seq1  AACTGGAATTC  1099
      |||||||||||
seq2  AACTGGAATTC  1107