BAC Information

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BAC

Clone NameB6Ng01-249P18
Chromosome12 (Build37)
Map Location 68,957,338 - 69,063,633
singlet/doubletdoublet
Overlap genenone
Upstream geneMdga2, LOC100040745
Downstream geneLOC100040681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249P18.bB6Ng01-249P18.g
ACCGA057661GA057662
length1,189139
definitionB6Ng01-249P18.b B6Ng01-249P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,957,338 - 68,958,548)(69,063,495 - 69,063,633)
sequence
gaattcttacataaatatggaatctgagacatcccaaaatctgtgctcca
aaatccaaaatcttgagaactacaagagtccatggcacaaaatcaaattt
gaatctgaaagcagaagaccaaaattttctcctaaaggcaattaggaaac
acaaaaattccccttgttcaccacttcttctatttagaacatcaaatgag
tccaagaaacctgccatagtaaatagagaaatttcttttactcagtctcc
tatttcaaatattaacctccaccagaaaaaaatcttcacggtatcaattg
caataatgtcttacaaatatccaatttctgaggatttctatggcccagat
aggttgacatataaaactagtaataatagttatttagtggccttctgatt
tttctatcatattagcaactcctgaaacttcaacttttcataagagccat
ctttgttctctcctactgcagaaaaggtatgcatgtttcctattaaggag
ataaactatttctccatatatagatacactaaaaaatacatttcattgta
taattttagcagatcataatttacatggcacttcagtcctagaacccaag
cttcctaatctcaaagatgttgtttcaaaagactcaaattagttttcaca
aaggaaaagaaacaatgtttatctaaaggcataaccatatctccctgact
ttagagttaatttgaaacgtcagtcttcatgttttggagactttgtatct
ttgatatagaactcaaatattaatgtataagaatattacttacacatatt
ttctttaaaaaggatagcatccataaaatacagtatagctaagatatgaa
aaggaaaacatatttctaatattgattatgactttcatgtatcatcaaca
ttttaattataaaatctaggtgattctttggcctaagtataatatattaa
aatggaataaaatagttaaaagtattaaaatggtgataggcttatcctta
gtatcacctgtcttcccttacggaccactaattttaaaccactgttgtaa
taacataatagttacatatgtctccactttccttcagatcataccaggga
cttaatatgtagtctccttagtaattctttgcagttctcatgtgacagat
tataagtatcaaatcaagaatgatgattgcttcttaaca

tcattcctacaatgagtagttgtaactgttttggagatagggtattctta
gccatcaataacatgttaagacttctaacacctcaatacctttccttatt
ttttttttaaggaggaggaggaggaggaggaggaggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_68957338_68958548
seq2: B6Ng01-249P18.b_46_1234

seq1  GAATTCTTACATAAATATGGAATCTGAGACATCCCAAAATCTGTGCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACATAAATATGGAATCTGAGACATCCCAAAATCTGTGCTCCA  50

seq1  AAATCCAAAATCTTGAGAACTACAAGAGTCCATGGCACAAAATCAAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAAAATCTTGAGAACTACAAGAGTCCATGGCACAAAATCAAATTT  100

seq1  GAATCTGAAAGCAGAAGACCAAAATTTTCTCCTAAAGGCAATTAGGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGAAAGCAGAAGACCAAAATTTTCTCCTAAAGGCAATTAGGAAAC  150

seq1  ACAAAAATTCCCCTTGTTCACCACTTCTTCTATTTAGAACATCAAATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTCCCCTTGTTCACCACTTCTTCTATTTAGAACATCAAATGAG  200

seq1  TCCAAGAAACCTGCCATAGTAAATAGAGAAATTTCTTTTACTCAGTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAAACCTGCCATAGTAAATAGAGAAATTTCTTTTACTCAGTCTCC  250

seq1  TATTTCAAATATTAACCTCCACCAGAAAAAAATCTTCACGGTATCAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAAATATTAACCTCCACCAGAAAAAAATCTTCACGGTATCAATTG  300

seq1  CAATAATGTCTTACAAATATCCAATTTCTGAGGATTTCTATGGCCCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATGTCTTACAAATATCCAATTTCTGAGGATTTCTATGGCCCAGAT  350

seq1  AGGTTGACATATAAAACTAGTAATAATAGTTATTTAGTGGCCTTCTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGACATATAAAACTAGTAATAATAGTTATTTAGTGGCCTTCTGATT  400

seq1  TTTCTATCATATTAGCAACTCCTGAAACTTCAACTTTTCATAAGAGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCATATTAGCAACTCCTGAAACTTCAACTTTTCATAAGAGCCAT  450

seq1  CTTTGTTCTCTCCTACTGCAGAAAAGGTATGCATGTTTCCTATTAAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTCTCCTACTGCAGAAAAGGTATGCATGTTTCCTATTAAGGAG  500

seq1  ATAAACTATTTCTCCATATATAGATACACTAAAAAATACATTTCATTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTATTTCTCCATATATAGATACACTAAAAAATACATTTCATTGTA  550

seq1  TAATTTTAGCAGATCATAATTTACATGGCACTTCAGTCCTAGAACCCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAGCAGATCATAATTTACATGGCACTTCAGTCCTAGAACCCAAG  600

seq1  CTTCCTAATCTCAAAGATGTTGTTTCAAAAGACTCAAATTAGTTTTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAATCTCAAAGATGTTGTTTCAAAAGACTCAAATTAGTTTTCACA  650

seq1  AAGGAAAAGAAACAATGTTTATCTAAAGGCATAACCATATCTCCCTGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAGAAACAATGTTTATCTAAAGGCATAACCATATCTCCCTGACT  700

seq1  TTAGAGTTAATTTGAAACGTCAGTCTTCATGTTTTGGAGACTTTGTATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTAATTTGAAACGTCAGTCTTCATGTTTTGGAGACTTTGTATCT  750

seq1  TTGATATAGAACTCAAATATTAATGTATAAGAATATTACTTACACATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATAGAACTCAAATATTAATGTATAAGAATATTACTTACACATATT  800

seq1  TTCTTTAAAAAGGATAGCATCCATAAAATACAGTATAGCTAAGATATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAAAAGGATAGCATCCATAAAATACAGTATAGCTAAGATATGAA  850

seq1  AAGGAAAACATATTTCTAATATTGATTATGACTTTCATGTATCATCAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAACATATTTCTAATATTGATTATGACTTTCATGTATCATCAACA  900

seq1  TTTTAATTATAAAATCTAGGTGATTCTTTGGCCTAAGTATAATATATTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTATAAAATCTAGGTGATTCTTTGGCCTAAGTATAATATATTAA  950

seq1  AATGGAATAAAATAGTTAAAAGTATTAAAATGGTGATAGGCTTATCCTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATAAAATAGTTAAAAGTATTAAAATGGTGATAGGCTTATCCTTA  1000

seq1  GTATCA-CTGTCTTCCCTAACGGA-CACTAATTTTAAA-CACTGTTTTGT  1047
      |||||| ||||||||||| ||||| ||||||||||||| ||||||| |  
seq2  GTATCACCTGTCTTCCCTTACGGACCACTAATTTTAAACCACTGTTGT--  1048

seq1  TAATTAACAT-ATAGTTACATAATGTCTCACCTTTCCTTTCAGATCATAC  1096
        | |||||| |||||||||| |||||||  |||||| ||||||||||||
seq2  --AATAACATAATAGTTACAT-ATGTCTCCACTTTCC-TTCAGATCATAC  1094

seq1  CAGGAACTTTAAATTAATGTAGTCTTCCTTAGGTAAATTCTTTTGCAAGG  1146
      |||| ||||  |||  |||||||| |||||||   ||||| ||||||  |
seq2  CAGGGACTT--AAT--ATGTAGTC-TCCTTAG--TAATTC-TTTGCA--G  1134

seq1  TTCTCATGTGGCACAGATTTTAATAAAATAATCAAAAATCAAGATATGAT  1196
      ||||||||||  ||||||     || ||  |||  ||||||||| |||||
seq2  TTCTCATGTG--ACAGAT-----TATAAGTATC--AAATCAAGA-ATGAT  1174

seq1  GATTGCTTCATAACA  1211
      ||||||||| |||||
seq2  GATTGCTTCTTAACA  1189


seq1: chr12_69063495_69063633
seq2: B6Ng01-249P18.g_73_211 (reverse)

seq1  TTTCCTCCTCCTCCTCCTCCTCCTCCTCCTTAAAAAAAAAATAAGGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTCCTCCTCCTCCTCCTCCTCCTTAAAAAAAAAATAAGGAAAG  50

seq1  GTATTGAGGTGTTAGAAGTCTTAACATGTTATTGATGGCTAAGAATACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAGGTGTTAGAAGTCTTAACATGTTATTGATGGCTAAGAATACCC  100

seq1  TATCTCCAAAACAGTTACAACTACTCATTGTAGGAATGA  139
      |||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCAAAACAGTTACAACTACTCATTGTAGGAATGA  139


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