BAC Information

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BAC

Clone NameB6Ng01-250O21
Chromosome12 (Build37)
Map Location 118,661,561 - 118,803,406
singlet/doubletdoublet
Overlap geneRapgef5
Upstream geneNcapg2, Rnu7-ps1, Ptprn2, LOC627375, LOC432713, LOC100042461
Downstream geneA930023M06Rik, Cdca7l, Dnahc11, Sp4, LOC100042993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250O21.bB6Ng01-250O21.g
ACCGA058335GA058336
length1,1981,060
definitionB6Ng01-250O21.b B6Ng01-250O21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,802,199 - 118,803,406)(118,661,561 - 118,662,609)
sequence
gaattcaagaggatcagaaccaggcaaggtggtgtacacctataatccca
acatgcaggaggctgaggcaagagaaatcattagttcaagacaaacccat
acagagagattctaactggttagattctctaactgttttatatacagaga
cacctatcagaagtatcaaatgcaaactcttccatgtgtactcttaggtt
ctacccccatagaaagtcagttttctggctctctgatgtctgttatgttt
ctgtcaaccctgggcaagtctagttcaaagcaaaacattgttcccagaga
cagtgagagtacaccacatcattgggtctttaacaatgactatgaggagc
agagattccttctccctggatactgatgaaactctgagctggcttgtctt
tcacttactttgtagcccttgattagctagcatttgaccctgcagacttg
tgaagttttcttctgggtcccatcatacacacacacacacacacacacac
acacacacacacacacacacacacacctctcgcatgaccttccttcaaca
gctcccttcacagccacatcagcctctgtcactcccttctatgtttccaa
gcacgagtcagaatgttctccgcatctctcactgtatttcctttatacat
tcccaggtacggacctgccgttttctcttcatctactaaaactggattcg
acactcactttctgtgacaagtccttcttcacactgtgaaaagccactgt
aaggcagaagtgccttcaacagacttactcaccggccatcctgcactgca
gggctgaataggcgacagggagctgccaccgacaaaagtcttattaagga
agtcgtatacctcacataaagctaacttgggaaacgatccaactccacat
tcagagtgtaatagctgctggatgaatactgcctttgtgggactgtagca
ggtgagggtctgtctaaatatcctttcctttccccaactctttgctacta
acttagagtcttactttcaccaaatcatgttctctaagcctgctctatgt
atgtctctagtacacatctactatttcctttactaaatcccgtctctatt
tttttttcttcagacaggcttcactatcatgcctagctggaactcaccaa
tgtagttcagctagcttcactggaatccggtctcagggctgtaagtac

gaattcttttttttttcttttttaaagatttatttatttttattatatgt
aagtacactgtagctgtcttcagacactccagaagagggagtcagatctc
attacagatggttgtgaaccaccatgtgattgctgggatttgaactttgg
accttcggaagagcagtcgggtgctcttacccacttagccatctcaccag
ctacctgaattcttaaatgacttgttggctctctctcctgcagctccaaa
tctgatctgcccgcccccccccccgacacacacacacactacatcatggc
aatcttccttttcctcctcctctctgtcctagccctcacaaatctaaagg
tcctgccccatctctgattgcctagccattgctgttggctctttattgat
cattcaaaaacctagtggggacaaggaccttcagtgtttggacacacaga
ttcccaattaaatcaaagcattagaaccaatccccaacaggataagggat
taaattttaattttcatgttagcaaaattttattgtaaacatatttcaca
taatacttggggcatggttatgctataaatgttttgtttcctaaaatttt
aatttaggaaataaaagaaagctggatactcaggttaagtttaaacttct
gataactaacagatactctccactacgcacaggtccggattgtgaagtga
ggattaaaaaaaaaaatatatatatatatatatatatatatatatatata
tatatatatataatgtatatgagtacactgtagctgtctttcagacacac
cagaagaaggtatcagatcttcattagagatgggttgtgagccaccatgt
gtttgcttgggaattgaactcaaggccctctggaagagcattcagtgctc
cctaaccgctggagccattctctccaaaccctaagtggaggatttttaat
aggaagaactttttggtttctcctgatgctctagcattatgtgttttcac
gtctcagcttcactccaggatcagagttgatcatcaaaagcttctgaata
tcatggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_118802199_118803406
seq2: B6Ng01-250O21.b_47_1244 (reverse)

seq1  GTACTTACAGCACTGAGACAGAATCTCAAGTTGAAGACTAGGCTGAACTA  50
      ||||||||||| ||||||| | || || || ||||| ||| |||||||||
seq2  GTACTTACAGCCCTGAGACCGGAT-TCCAG-TGAAG-CTA-GCTGAACTA  46

seq1  CA-TAGTGAGTTCAGAGCTAGCCATGGATAGTGAACCCCTGTCTGAGGAA  99
      || | ||||||||  |||||| ||| |||||||||  ||||||||| |||
seq2  CATTGGTGAGTTC-CAGCTAGGCAT-GATAGTGAA-GCCTGTCTGAAGAA  93

seq1  AAAAAAATAGAGA-GGGATTTAGTAAAGAAAATAGTAGATGTGTAAATAG  148
      ||||||||||||| |||||||||||||| ||||||||||||||| | |||
seq2  AAAAAAATAGAGACGGGATTTAGTAAAGGAAATAGTAGATGTGT-ACTAG  142

seq1  AAGACATAACATAGGAAGCAGGCTTAGAGGACATGATTTGGTGAAAGT-A  197
       |||||| ||||||  ||||||||||||| |||||||||||||||||| |
seq2  -AGACAT-ACATAG--AGCAGGCTTAGAGAACATGATTTGGTGAAAGTAA  188

seq1  GACTCTAAGTTAGTAGCAAAGAGTTGGGGAAAGGAAAGGATATTTAGACA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAAGTTAGTAGCAAAGAGTTGGGGAAAGGAAAGGATATTTAGACA  238

seq1  GACCCTCACCTGCTACAGTCCCACAAAGGCAGTATTCATCCAGCAGCTAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCACCTGCTACAGTCCCACAAAGGCAGTATTCATCCAGCAGCTAT  288

seq1  TACACTCTGAATGTGGAGTTTGGATCGTTTCCCAAGTTAGCTTTATGTGA  347
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TACACTCTGAATGTGGAG-TTGGATCGTTTCCCAAGTTAGCTTTATGTGA  337

seq1  GGTATACGACTTCCTTAATAAGACTTTTGTCGGTGGCAGCTCCCTGTCGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATACGACTTCCTTAATAAGACTTTTGTCGGTGGCAGCTCCCTGTCGC  387

seq1  CTATTCAGCCCTGCAGTGCAGGATGGCCGGTGAGTAAGTCTGTTGAAGGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGCCCTGCAGTGCAGGATGGCCGGTGAGTAAGTCTGTTGAAGGC  437

seq1  ACTTCTGCCTTACAGTGGCTTTTCACAGTGTGAAGAAGGACTTGTCACAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCCTTACAGTGGCTTTTCACAGTGTGAAGAAGGACTTGTCACAG  487

seq1  AAAGTGAGTGTCGAATCCAGTTTTAGTAGATGAAGAGAAAACGGCAGGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTGTCGAATCCAGTTTTAGTAGATGAAGAGAAAACGGCAGGTC  537

seq1  CGTACCTGGGAATGTATAAAGGAAATACAGTGAGAGATGCGGAGAACATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACCTGGGAATGTATAAAGGAAATACAGTGAGAGATGCGGAGAACATT  587

seq1  CTGACTCGTGCTTGGAAACATAGAAGGGAGTGACAGAGGCTGATGTGGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCGTGCTTGGAAACATAGAAGGGAGTGACAGAGGCTGATGTGGCT  637

seq1  GTGAAGGGAGCTGTTGAAGGAAGGTCATGCGAGAGGTGTGTGTGTGTGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGAGCTGTTGAAGGAAGGTCATGCGAGAGGTGTGTGTGTGTGTG  687

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGATGGGACCCAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGATGGGACCCAGA  737

seq1  AGAAAACTTCACAAGTCTGCAGGGTCAAATGCTAGCTAATCAAGGGCTAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTTCACAAGTCTGCAGGGTCAAATGCTAGCTAATCAAGGGCTAC  787

seq1  AAAGTAAGTGAAAGACAAGCCAGCTCAGAGTTTCATCAGTATCCAGGGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGTGAAAGACAAGCCAGCTCAGAGTTTCATCAGTATCCAGGGAG  837

seq1  AAGGAATCTCTGCTCCTCATAGTCATTGTTAAAGACCCAATGATGTGGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATCTCTGCTCCTCATAGTCATTGTTAAAGACCCAATGATGTGGTG  887

seq1  TACTCTCACTGTCTCTGGGAACAATGTTTTGCTTTGAACTAGACTTGCCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCACTGTCTCTGGGAACAATGTTTTGCTTTGAACTAGACTTGCCC  937

seq1  AGGGTTGACAGAAACATAACAGACATCAGAGAGCCAGAAAACTGACTTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGACAGAAACATAACAGACATCAGAGAGCCAGAAAACTGACTTTC  987

seq1  TATGGGGGTAGAACCTAAGAGTACACATGGAAGAGTTTGCATTTGATACT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGGTAGAACCTAAGAGTACACATGGAAGAGTTTGCATTTGATACT  1037

seq1  TCTGATAGGTGTCTCTGTATATAAAACAGTTAGAGAATCTAACCAGTTAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAGGTGTCTCTGTATATAAAACAGTTAGAGAATCTAACCAGTTAG  1087

seq1  AATCTCTCTGTATGGGTTTGTCTTGAACTAATGATTTCTCTTGCCTCAGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCTGTATGGGTTTGTCTTGAACTAATGATTTCTCTTGCCTCAGC  1137

seq1  CTCCTGCATGTTGGGATTATAGGTGTACACCACCTTGCCTGGTTCTGATC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCATGTTGGGATTATAGGTGTACACCACCTTGCCTGGTTCTGATC  1187

seq1  CTCTTGAATTC  1208
      |||||||||||
seq2  CTCTTGAATTC  1198


seq1: chr12_118661561_118662609
seq2: B6Ng01-250O21.g_68_1127

seq1  GAATTCTTTTTTTTTTCTTTTTTAAAGATTTATTTATTTTTATTATATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTTCTTTTTTAAAGATTTATTTATTTTTATTATATGT  50

seq1  AAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTC  100

seq1  ATTACAGATGGTTGTGAACCACCATGTGATTGCTGGGATTTGAACTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGATGGTTGTGAACCACCATGTGATTGCTGGGATTTGAACTTTGG  150

seq1  ACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTTAGCCATCTCACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTTAGCCATCTCACCAG  200

seq1  CTACCTGAATTCTTAAATGACTTGTTGGCTCTCTCTCCTGCAGCTCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGAATTCTTAAATGACTTGTTGGCTCTCTCTCCTGCAGCTCCAAA  250

seq1  TCTGATCTGCCCGCCCCCCCCCCCGACACACACACACACTACATCATGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCTGCCCGCCCCCCCCCCCGACACACACACACACTACATCATGGC  300

seq1  AATCTTCCTTTTCCTCCTCCTCTCTGTCCTAGCCCTCACAAATCTAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCCTTTTCCTCCTCCTCTCTGTCCTAGCCCTCACAAATCTAAAGG  350

seq1  TCCTGCCCCATCTCTGATTGCCTAGCCATTGCTGTTGGCTCTTTATTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCCATCTCTGATTGCCTAGCCATTGCTGTTGGCTCTTTATTGAT  400

seq1  CATTCAAAAACCTAGTGGGGACAAGGACCTTCAGTGTTTGGACACACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAAAACCTAGTGGGGACAAGGACCTTCAGTGTTTGGACACACAGA  450

seq1  TTCCCAATTAAATCAAAGCATTAGAACCAATCCCCAACAGGATAAGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAATTAAATCAAAGCATTAGAACCAATCCCCAACAGGATAAGGGAT  500

seq1  TAAATTTTAATTTTCATGTTAGCAAAATTTTATTGTAAACATATTTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTAATTTTCATGTTAGCAAAATTTTATTGTAAACATATTTCACA  550

seq1  TAATACTTGGGGCATGGTTATGCTATAAATGTTTTGTTTCCTAAAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTGGGGCATGGTTATGCTATAAATGTTTTGTTTCCTAAAATTTT  600

seq1  AATTTAGGAAATAAAAGAAAGCTGGATACTCAGGTTAAGTTTAAACTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGGAAATAAAAGAAAGCTGGATACTCAGGTTAAGTTTAAACTTCT  650

seq1  GATAACTAACAGATACTCTCCACTACGCACAGGTCCGGATTGTGAAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTAACAGATACTCTCCACTACGCACAGGTCCGGATTGTGAAGTGA  700

seq1  GGATTAAAAAAAAAAATATATATATATATATATATATATATATATATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAAAAAAAAATATATATATATATATATATATATATATATATATA  750

seq1  TATATATATATAATGTATATGAGTACACTGTAGCTGTC-TTCAGACACAC  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATATATATATAATGTATATGAGTACACTGTAGCTGTCTTTCAGACACAC  800

seq1  CAGAAGAAGGTATCAGATC-TCATTAGAGAT-GGTTGTGAGCCACCATGT  847
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  CAGAAGAAGGTATCAGATCTTCATTAGAGATGGGTTGTGAGCCACCATGT  850

seq1  GTTTGC-TGGGAATTGAACTC-AGGGCCTCTGGAAGAGCAGTCAGTGCT-  894
      |||||| |||||||||||||| ||| |||||||||||||| |||||||| 
seq2  GTTTGCTTGGGAATTGAACTCAAGGCCCTCTGGAAGAGCATTCAGTGCTC  900

seq1  CCTAACCGCT-GAGCCA-TCTCTCCAAA-CCTAAGT-GAGGATTTTTAAT  940
      |||||||||| |||||| |||||||||| ||||||| |||||||||||||
seq2  CCTAACCGCTGGAGCCATTCTCTCCAAACCCTAAGTGGAGGATTTTTAAT  950

seq1  A-GAAGAACTTTT--GTTTCT-CTGATGCTCTAGCCTTATGTGTTTTCAG  986
      | |||||||||||  |||||| ||||||||||||| ||||||||||||| 
seq2  AGGAAGAACTTTTTGGTTTCTCCTGATGCTCTAGCATTATGTGTTTTCAC  1000

seq1  GTCTCAGCTTCACTCCAAGATCAGAGTTGATCATCAAAAGAATTTCTGAA  1036
      ||||||||||||||||| ||||||||||||||||||||||   |||||||
seq2  GTCTCAGCTTCACTCCAGGATCAGAGTTGATCATCAAAAG--CTTCTGAA  1048

seq1  TAATCATGAAAAA  1049
      | |||||| ||||
seq2  T-ATCATGGAAAA  1060


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