BAC Information

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BAC

Clone NameB6Ng01-251I20
Chromosome12 (Build37)
Map Location 87,426,109 - 87,655,246
singlet/doubletdoublet
Overlap gene1700019E19Rik, 1700020O03Rik
Upstream geneProx2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3
Downstream geneLOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251I20.bB6Ng01-251I20.g
ACCGA058783GA058784
length1,1531,126
definitionB6Ng01-251I20.b B6Ng01-251I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,426,109 - 87,427,247)(87,654,129 - 87,655,246)
sequence
gaattcttcactgactcagactggagaggtgagtgctgccgagacaggaa
acaggaagtcgtggacttttaagaataaatgagcccttaatgagcagggt
tgtggtatctacatttgtttggaatgccagcctctccacgtgtcctgatt
tggaagttccccatgaggacatttgtcctactgggaacatctttcctttg
agacaatattggcttctggacatttttttccctctcatattcatagtgta
aaatttttatttttattttttaaagacagggtctcaagtagcccaggctg
gtatggagctcgctgtgtagctgaggatggccctgacttactgactctcc
tgcctccatctcaggagtgcttgccctgttgtttgcaggcactgggatca
ggcttagggcttcatgcatgagaggcaaacaccccatcacctgaggacat
ccccagctctgtagagctttgggtgccctctgaagccaggccctgggaag
ctgtccaggaaggtgccctggcactgggaggtcgaatcacacagctggag
gctcgatgtaagcagcgactactgtctcctccaggtcccggcaggaaggg
gggcctgggctgctgctgtcttctgcaaacttccccaagagacctccacc
ttaggggaatgatccggcttctttgtgaaaggtgggaaatccaggagcag
tattctttgctatcggggttcactcagccctctccctttgtgcagtcttt
gcctttccagagtctccctgaccgccgtaggctgtcttcctagggctgcc
gcctcctgcttttgctgcacccacctgccttagggcaggctggggtattt
atttgctgactgttacatctctctgctccactagaagtgagtcaccagac
agtaaggaaagccggctttctttggtcagctaactcaacagttcacagtg
gctgagaaagtgggttgctgagaagcctggccagcccatgcgggtgcaca
ttaaaacagacacagtgttattcatgggttcctcttagtgggcatcagaa
cgaaggttcacaagtttcttagctctttatgtggctcctgtccacatgtt
cttgcgtttttccctcttgtctgtaaaagcagatcattgaggagtttatt
att
gaattccatactcatcataagcatccatgaccaaactcccagcattcact
agaaatgtgtctaagctggctctgctaagcctgtacctgtgcagttcttg
gtcacagcagagcacccactaagcgcacttgcacacagtcagagttccat
ccctttagaagaagatgctccatcagtctcagggttaaaatggttcactc
caagaggccatgcacgagactcactcctcttctaaatcagcatttcctgg
tatttgggcttcaaatgcatttattttgttatgactcctgtagagttttc
tgacccagctttgcatttctacttggcgttccattttcctgcgtgcttga
attaaaggactgtatttttggcatttaaatggcagccatctacacccttt
atgatgagagacacattcacggactcatcctccccaactcaggaaatttc
cccaagacccgagatcacgaacactagttaatttttttcccattagaaac
aggtgacagagctgaatctgtgatccagggatgtaatcccaatgccagga
agacagagacaagaagatcacaagttcaaggtcagcctacagcacacagt
gagtctaagggcatcctggactgtgtggtaagcctgtcttttaaaaagga
aaaggaaaaagaagctggtgacaggttggctgaagtcatggtcctgggcc
tgtccaagagcttgggggtcttgggtattagtgatttaatatcaaagatc
tatcacttgtgggaaattatatatttatgaatagcaatagatttttccca
tgaggccaatcgagaacatatcaaataatatatattttttgcgtcctact
tgtgataaaaaaagatccctccacaccataatgtttttcttttatagaaa
attctaaagattgatccttggtttttgtgagacagctcatagaagagcgg
tgttaacaatcacacctgcagccctagtttgtttcaggggcttgaattga
ggggaaagcgtgcaagaaaggtgcttgttgaaacaaaataattctaaaaa
aatcattactgcatctgagaacttgggctggccagtttttactagacgat
gctccggctggagatttcaattctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_87426109_87427247
seq2: B6Ng01-251I20.b_46_1198

seq1  GAATTCTTCACTGACTCAGACTGGAGAGGTGAGTGCTGCCGAGACAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACTGACTCAGACTGGAGAGGTGAGTGCTGCCGAGACAGGAA  50

seq1  ACAGGAAGTCGTGGACTTTTAAGAATAAATGAGCCCTTAATGAGCAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGTCGTGGACTTTTAAGAATAAATGAGCCCTTAATGAGCAGGGT  100

seq1  TGTGGTATCTACATTTGTTTGGAATGCCAGCCTCTCCACGTGTCCTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTATCTACATTTGTTTGGAATGCCAGCCTCTCCACGTGTCCTGATT  150

seq1  TGGAAGTTCCCCATGAGGACATTTGTCCTACTGGGAACATCTTTCCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTCCCCATGAGGACATTTGTCCTACTGGGAACATCTTTCCTTTG  200

seq1  AGACAATATTGGCTTCTGGACATTTTTTTCCCTCTCATATTCATAGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATATTGGCTTCTGGACATTTTTTTCCCTCTCATATTCATAGTGTA  250

seq1  AAATTTTTATTTTTATTTTTTAAAGACAGGGTCTCAAGTAGCCCAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTATTTTTATTTTTTAAAGACAGGGTCTCAAGTAGCCCAGGCTG  300

seq1  GTATGGAGCTCGCTGTGTAGCTGAGGATGGCCCTGACTTACTGACTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAGCTCGCTGTGTAGCTGAGGATGGCCCTGACTTACTGACTCTCC  350

seq1  TGCCTCCATCTCAGGAGTGCTTGCCCTGTTGTTTGCAGGCACTGGGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCATCTCAGGAGTGCTTGCCCTGTTGTTTGCAGGCACTGGGATCA  400

seq1  GGCTTAGGGCTTCATGCATGAGAGGCAAACACCCCATCACCTGAGGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGGGCTTCATGCATGAGAGGCAAACACCCCATCACCTGAGGACAT  450

seq1  CCCCAGCTCTGTAGAGCTTTGGGTGCCCTCTGAAGCCAGGCCCTGGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCTCTGTAGAGCTTTGGGTGCCCTCTGAAGCCAGGCCCTGGGAAG  500

seq1  CTGTCCAGGAAGGTGCCCTGGCACTGGGAGGTCGAATCACACAGCTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGGAAGGTGCCCTGGCACTGGGAGGTCGAATCACACAGCTGGAG  550

seq1  GCTCGATGTAAGCAGCGACTACTGTCTCCTCCAGGTCCCGGCAGGAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGATGTAAGCAGCGACTACTGTCTCCTCCAGGTCCCGGCAGGAAGGG  600

seq1  GGGCCTGGGCTGCTGCTGTCTTCTGCAAACTTCCCCAAGAGACCTCCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGGGCTGCTGCTGTCTTCTGCAAACTTCCCCAAGAGACCTCCACC  650

seq1  TTAGGGGAATGATCCGGCTTCTTTGTGAAAGGTGGGAAATCCAGGAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGAATGATCCGGCTTCTTTGTGAAAGGTGGGAAATCCAGGAGCAG  700

seq1  TATTCTTTGCTATCGGGGTTCACTCAGCCCTCTCCCTTTGTGCAGTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTGCTATCGGGGTTCACTCAGCCCTCTCCCTTTGTGCAGTCTTT  750

seq1  GCCTTTCCAGAGTCTCCCTGACCGCCGTAGGCTGTCTTCCTAGGGCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCCAGAGTCTCCCTGACCGCCGTAGGCTGTCTTCCTAGGGCTGCC  800

seq1  GCCTCCTGCTTTTGCTGCACCCACCTGCCTTAGGGCAGGCTGGGGTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGCTTTTGCTGCACCCACCTGCCTTAGGGCAGGCTGGGGTATTT  850

seq1  ATTTGCTGACTGTTACATCTCTCTGCTCCACTAGAAGTGAGTCACCAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTGACTGTTACATCTCTCTGCTCCACTAGAAGTGAGTCACCAGAC  900

seq1  AGT-AGGAAAGCCGGC-TTCTT--GGCAGCTAACTCAACAGTTCACAGTG  946
      ||| |||||||||||| |||||  | ||||||||||||||||||||||||
seq2  AGTAAGGAAAGCCGGCTTTCTTTGGTCAGCTAACTCAACAGTTCACAGTG  950

seq1  GCTGAGAAAGTGGG-TGCTGAGAAGCCTGG-CAGCCCATGCGGGTGCACA  994
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  GCTGAGAAAGTGGGTTGCTGAGAAGCCTGGCCAGCCCATGCGGGTGCACA  1000

seq1  -TAAAACAGACACAGTG-TATTCATGGG-TCCCCTAAGTGGGCATCAGAA  1041
       |||||||||||||||| |||||||||| ||| || ||||||||||||||
seq2  TTAAAACAGACACAGTGTTATTCATGGGTTCCTCTTAGTGGGCATCAGAA  1050

seq1  ACGAGG-TCACAGTTTCCTTAAGCTCTTTATGTGGC-CCTGTCCACATG-  1088
         ||| |||||  || ||| ||||||||||||||| |||||||||||| 
seq2  CGAAGGTTCACAAGTTTCTT-AGCTCTTTATGTGGCTCCTGTCCACATGT  1099

seq1  TCTTGCG-TTTTCCCTCTTG-CTGTAGAAGCAGGAGCA-TGAGGAG-TTA  1134
      ||||||| |||||||||||| ||||| ||||| || || ||||||| |||
seq2  TCTTGCGTTTTTCCCTCTTGTCTGTAAAAGCA-GATCATTGAGGAGTTTA  1148

seq1  TTAGT  1139
      ||| |
seq2  TTATT  1153

seq1: chr12_87654129_87655246
seq2: B6Ng01-251I20.g_68_1193 (reverse)

seq1  AGAGAA-TGAAATCTTCAGCGGGAGCATCGTCTAGTAAAAACT-GCCAGG  48
      |||||| |||||||| |||| |||||||||||||||||||||| ||||| 
seq2  AGAGAATTGAAATCTCCAGCCGGAGCATCGTCTAGTAAAAACTGGCCAGC  50

seq1  CCAAGGTCTCAGATGCAGTATTGATTTTTTTAGAATTATTTTTGTTTTCA  98
      ||||| |||||||||||||| |||||||||||||||||||||   |||||
seq2  CCAAGTTCTCAGATGCAGTAATGATTTTTTTAGAATTATTTT--GTTTCA  98

seq1  ACAAACCACCTTTTCCTGCACGCTTTTCCCTC-ATTC-AGCCCCTGGAAA  146
      || || |||| |||| |||||||||| ||||| |||| |||||||| || 
seq2  AC-AAGCACC-TTTCTTGCACGCTTTCCCCTCAATTCAAGCCCCTGAAAC  146

seq1  CAACTTGGGCTGC-GGTGTGA-TGTTAACACCGCTCTTCTATGAGCTGTC  194
       |||| ||||||| ||||||| ||||||||||||||||||||||||||||
seq2  AAACTAGGGCTGCAGGTGTGATTGTTAACACCGCTCTTCTATGAGCTGTC  196

seq1  TCACAAAA--CCAGGATCAATCTTTAGAA-TTTCTATAAAAG-AAAACAT  240
      ||||||||  | ||||||||||||||||| |||||||||||| |||||||
seq2  TCACAAAAACCAAGGATCAATCTTTAGAATTTTCTATAAAAGAAAAACAT  246

seq1  TATGGTGTGG-GGGATCTTTTTTTTATCAC-AGTAGGACGC-AAAAATAT  287
      |||||||||| |||||| |||||||||||| |||||||||| ||||||||
seq2  TATGGTGTGGAGGGATC-TTTTTTTATCACAAGTAGGACGCAAAAAATAT  295

seq1  ATATTATTTGATATGTTCTCGATTGGCCTCATGGGAAAAATCTATTGCTA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTTGATATGTTCTCGATTGGCCTCATGGGAAAAATCTATTGCTA  345

seq1  TTCATAAATATATAATTTCCCACAAGTGATAGATCTTTGATATTAAATCA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAATATATAATTTCCCACAAGTGATAGATCTTTGATATTAAATCA  395

seq1  CTAATACCCAAGACCCCCAAGCTCTTGGACAGGCCCAGGACCATGACTTC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACCCAAGACCCCCAAGCTCTTGGACAGGCCCAGGACCATGACTTC  445

seq1  AGCCAACCTGTCACCAGCTTCTTTTTCCTTTTCCTTTTTAAAAGACAGGC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACCTGTCACCAGCTTCTTTTTCCTTTTCCTTTTTAAAAGACAGGC  495

seq1  TTACCACACAGTCCAGGATGCCCTTAGACTCACTGTGTGCTGTAGGCTGA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACACAGTCCAGGATGCCCTTAGACTCACTGTGTGCTGTAGGCTGA  545

seq1  CCTTGAACTTGTGATCTTCTTGTCTCTGTCTTCCTGGCATTGGGATTACA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTTGTGATCTTCTTGTCTCTGTCTTCCTGGCATTGGGATTACA  595

seq1  TCCCTGGATCACAGATTCAGCTCTGTCACCTGTTTCTAATGGGAAAAAAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGATCACAGATTCAGCTCTGTCACCTGTTTCTAATGGGAAAAAAA  645

seq1  TTAACTAGTGTTCGTGATCTCGGGTCTTGGGGAAATTTCCTGAGTTGGGG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAGTGTTCGTGATCTCGGGTCTTGGGGAAATTTCCTGAGTTGGGG  695

seq1  AGGATGAGTCCGTGAATGTGTCTCTCATCATAAAGGGTGTAGATGGCTGC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAGTCCGTGAATGTGTCTCTCATCATAAAGGGTGTAGATGGCTGC  745

seq1  CATTTAAATGCCAAAAATACAGTCCTTTAATTCAAGCACGCAGGAAAATG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAATGCCAAAAATACAGTCCTTTAATTCAAGCACGCAGGAAAATG  795

seq1  GAACGCCAAGTAGAAATGCAAAGCTGGGTCAGAAAACTCTACAGGAGTCA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCCAAGTAGAAATGCAAAGCTGGGTCAGAAAACTCTACAGGAGTCA  845

seq1  TAACAAAATAAATGCATTTGAAGCCCAAATACCAGGAAATGCTGATTTAG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAATAAATGCATTTGAAGCCCAAATACCAGGAAATGCTGATTTAG  895

seq1  AAGAGGAGTGAGTCTCGTGCATGGCCTCTTGGAGTGAACCATTTTAACCC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGTGAGTCTCGTGCATGGCCTCTTGGAGTGAACCATTTTAACCC  945

seq1  TGAGACTGATGGAGCATCTTCTTCTAAAGGGATGGAACTCTGACTGTGTG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTGATGGAGCATCTTCTTCTAAAGGGATGGAACTCTGACTGTGTG  995

seq1  CAAGTGCGCTTAGTGGGTGCTCTGCTGTGACCAAGAACTGCACAGGTACA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCGCTTAGTGGGTGCTCTGCTGTGACCAAGAACTGCACAGGTACA  1045

seq1  GGCTTAGCAGAGCCAGCTTAGACACATTTCTAGTGAATGCTGGGAGTTTG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGCAGAGCCAGCTTAGACACATTTCTAGTGAATGCTGGGAGTTTG  1095

seq1  GTCATGGATGCTTATGATGAGTATGGAATTC  1118
      |||||||||||||||||||||||||||||||
seq2  GTCATGGATGCTTATGATGAGTATGGAATTC  1126