BAC Information

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BAC

Clone NameB6Ng01-252K07
Chromosome12 (Build37)
Map Location 48,225,870 - 48,311,772
singlet/doubletdoublet
Overlap geneLOC100039190
Upstream geneLOC664952, Nova1
Downstream geneEG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252K07.bB6Ng01-252K07.g
ACCGA059584GA059585
length972703
definitionB6Ng01-252K07.b B6Ng01-252K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,225,870 - 48,226,776)(48,311,071 - 48,311,772)
sequence
gaattctctaaggaatctacttctttcattttaaatacatttcctttaaa
tttacaagtgaattaaaaatgtttttatgcataaagggatgtttggaagt
atgtgtacaaaagtacactgaaatgattaatcctaactaacagtacctcc
ctattatcctgtcttttgtatttttaatttttaattctcttttcatttgt
aaagcatataacatagtgttattaattagagttgctacatccattcgatc
agttgaattcattccttttatttggattattgaaatcactgagcaacatc
tgcctcctttctgttttcacatcctctcagcccttggtgacaattattat
cctctctatttacatttgtcactatgtgtaagcccgtgcagcttttgttg
gtctgtgtcccattgattaaaattaaaaaaaaaatggccattctaccaaa
ggcaacatacatactcaattcaatctccatcaaaatcccaacacaagtct
tcaaaggcatggaaaaagcaattctcaaattcatctggaaagtcaaataa
actagaatagcaaaaacaattcttaacaacaaaagaacggcagggggaat
caccatccctgacctcaagctctattacagagcaatactgataaaaactg
catggtattggcacagagacagacaggttgatcaagggaatagaactgaa
gactcagaaataaaatcacacaattatacacactagatctttgacaaaga
agccaaaaatatacaatgggggaaaagcatcttgaatatatggtgctgtt
ataactggcagtctgtatgtagaaaaataaaaaatagacccatatttacc
accttgcacaaagctcaagtccaagtggatcaaggacctcaacataaacc
cagatacactgaatctaatagaagaggaaatgggaaagaaccttgaattc
attggcacaggggatattttct

gaattctctatgcaattccaacaattcaaaaagcaataaagcattctttg
atgtcttcttaatgttgcttttggtttcagttttctttcctaattaatat
tcatattaatccttataggcaaaaatatttttaatttaaaagaaatattt
aacatattaaatattgcttgtttaggaattattattgttacagcttctca
gatttttgcttttgttactaatttcttttattttctactatttaataatt
tcaatatatttcttggcaatcgacacaatggacagtatttttaagtccaa
acatatatttgagatatatatatatatatatatatatatatatatatata
tatatattctacagtaaaactggcctctttcttataacacacacacacac
acacacacacacacacacacacaaaacgagaggagaattggctcatcagc
aacttctgaatccagggtacctaacatgttcttctgacctctgtagttac
tgctactcacataggttcacgttcagttacctgggtgcatgagtgcacac
atacatgtacacttgtgcacacatgcatgcacataaatagcaatatttta
atagatgtttcataagatctatagaatagccactgaatttttttgcttct
cgtttttcttttctttttcttttctcttctcttctcttctcttctcttat
ctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_48225870_48226776
seq2: B6Ng01-252K07.b_43_949

seq1  GAATTCTCTAAGGAATCTACTTCTTTCATTTTAAATACATTTCCTTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGGAATCTACTTCTTTCATTTTAAATACATTTCCTTTAAA  50

seq1  TTTACAAGTGAATTAAAAATGTTTTTATGCATAAAGGGATGTTTGGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAGTGAATTAAAAATGTTTTTATGCATAAAGGGATGTTTGGAAGT  100

seq1  ATGTGTACAAAAGTACACTGAAATGATTAATCCTAACTAACAGTACCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACAAAAGTACACTGAAATGATTAATCCTAACTAACAGTACCTCC  150

seq1  CTATTATCCTGTCTTTTGTATTTTTAATTTTTAATTCTCTTTTCATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATCCTGTCTTTTGTATTTTTAATTTTTAATTCTCTTTTCATTTGT  200

seq1  AAAGCATATAACATAGTGTTATTAATTAGAGTTGCTACATCCATTCGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATATAACATAGTGTTATTAATTAGAGTTGCTACATCCATTCGATC  250

seq1  AGTTGAATTCATTCCTTTTATTTGGATTATTGAAATCACTGAGCAACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATTCATTCCTTTTATTTGGATTATTGAAATCACTGAGCAACATC  300

seq1  TGCCTCCTTTCTGTTTTCACATCCTCTCAGCCCTTGGTGACAATTATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTTTCTGTTTTCACATCCTCTCAGCCCTTGGTGACAATTATTAT  350

seq1  CCTCTCTATTTACATTTGTCACTATGTGTAAGCCCGTGCAGCTTTTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTATTTACATTTGTCACTATGTGTAAGCCCGTGCAGCTTTTGTTG  400

seq1  GTCTGTGTCCCATTGATTAAAATTAAAAAAAAAATGGCCATTCTACCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTCCCATTGATTAAAATTAAAAAAAAAATGGCCATTCTACCAAA  450

seq1  GGCAACATACATACTCAATTCAATCTCCATCAAAATCCCAACACAAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACATACATACTCAATTCAATCTCCATCAAAATCCCAACACAAGTCT  500

seq1  TCAAAGGCATGGAAAAAGCAATTCTCAAATTCATCTGGAAAGTCAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGCATGGAAAAAGCAATTCTCAAATTCATCTGGAAAGTCAAATAA  550

seq1  ACTAGAATAGCAAAAACAATTCTTAACAACAAAAGAACGGCAGGGGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATAGCAAAAACAATTCTTAACAACAAAAGAACGGCAGGGGGAAT  600

seq1  CACCATCCCTGACCTCAAGCTCTATTACAGAGCAATACTGATAAAAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCCCTGACCTCAAGCTCTATTACAGAGCAATACTGATAAAAACTG  650

seq1  CATGGTATTGGCACAGAGACAGACAGGTTGATCAAGGGAATAGAACTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTATTGGCACAGAGACAGACAGGTTGATCAAGGGAATAGAACTGAA  700

seq1  GACTCAGAAATAAAATCACACAATTATACACACTAGATCTTTGACAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGAAATAAAATCACACAATTATACACACTAGATCTTTGACAAAGA  750

seq1  AGCCAAAAATATACAATGGGGGAAAAGCATCTTGAATATATGGTGCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAAATATACAATGGGGGAAAAGCATCTTGAATATATGGTGCTGTT  800

seq1  ATAACTGGCAGTCTGTATGTAGAAAAATAAAAAATAGACCCATATTTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGGCAGTCTGTATGTAGAAAAATAAAAAATAGACCCATATTTACC  850

seq1  ACCTTGCACAAAGCTCAAGTCCAAGTGGATCAAGGACCTCAACATAAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCACAAAGCTCAAGTCCAAGTGGATCAAGGACCTCAACATAAACC  900

seq1  CAGATAC  907
      |||||||
seq2  CAGATAC  907


seq1: chr12_48311071_48311772
seq2: B6Ng01-252K07.g_68_770 (reverse)

seq1  AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAAAG-AAAAGAAAAGAAAA  49
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGATAAGAGAAGAGAAGAGAAGAGAAGAGAAAAGAAAAAGAAAAGAAAA  50

seq1  ACGAGAAGCAAAAAAATTCAGTGGCTATTCTATAGATCTTATGAAACATC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAAGCAAAAAAATTCAGTGGCTATTCTATAGATCTTATGAAACATC  100

seq1  TATTAAAATATTGCTATTTATGTGCATGCATGTGTGCACAAGTGTACATG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAATATTGCTATTTATGTGCATGCATGTGTGCACAAGTGTACATG  150

seq1  TATGTGTGCACTCATGCACCCAGGTAACTGAACGTGAACCTATGTGAGTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGCACTCATGCACCCAGGTAACTGAACGTGAACCTATGTGAGTA  200

seq1  GCAGTAACTACAGAGGTCAGAAGAACATGTTAGGTACCCTGGATTCAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAACTACAGAGGTCAGAAGAACATGTTAGGTACCCTGGATTCAGAA  250

seq1  GTTGCTGATGAGCCAATTCTCCTCTCGTTTTGTGTGTGTGTGTGTGTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGATGAGCCAATTCTCCTCTCGTTTTGTGTGTGTGTGTGTGTGTG  300

seq1  TGTGTGTGTGTGTGTGTTATAAGAAAGAGGCCAGTTTTACTGTAGAATAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTTATAAGAAAGAGGCCAGTTTTACTGTAGAATAT  350

seq1  ATATATATATATATATATATATATATATATATATATATATCTCAAATATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATCTCAAATATA  400

seq1  TGTTTGGACTTAAAAATACTGTCCATTGTGTCGATTGCCAAGAAATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGACTTAAAAATACTGTCCATTGTGTCGATTGCCAAGAAATATAT  450

seq1  TGAAATTATTAAATAGTAGAAAATAAAAGAAATTAGTAACAAAAGCAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTATTAAATAGTAGAAAATAAAAGAAATTAGTAACAAAAGCAAAA  500

seq1  ATCTGAGAAGCTGTAACAATAATAATTCCTAAACAAGCAATATTTAATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGAAGCTGTAACAATAATAATTCCTAAACAAGCAATATTTAATAT  550

seq1  GTTAAATATTTCTTTTAAATTAAAAATATTTTTGCCTATAAGGATTAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATATTTCTTTTAAATTAAAAATATTTTTGCCTATAAGGATTAATA  600

seq1  TGAATATTAATTAGGAAAGAAAACTGAAACCAAAAGCAACATTAAGAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTAATTAGGAAAGAAAACTGAAACCAAAAGCAACATTAAGAAGA  650

seq1  CATCAAAGAATGCTTTATTGCTTTTTGAATTGTTGGAATTGCATAGAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGAATGCTTTATTGCTTTTTGAATTGTTGGAATTGCATAGAGAA  700

seq1  TTC  702
      |||
seq2  TTC  703


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