BAC Information

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BAC

Clone NameB6Ng01-252K11
Chromosome12 (Build37)
Map Location 55,142,894 - 55,334,103
singlet/doubletdoublet
Overlap geneNpas3, Egln3
Upstream geneAkap6
Downstream geneEG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252K11.bB6Ng01-252K11.g
ACCGA059592GA059593
length1,0981,100
definitionB6Ng01-252K11.b B6Ng01-252K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,333,003 - 55,334,103)(55,142,894 - 55,143,999)
sequence
gaattcaggtggtgggaggtggatataaaattggcataggaactgctggc
aaagactgggatgggagaggaaggccagtaaattacagcaaatcccagag
gcagagaattttaagaaagaatatataaagttgacaatcttaaaacctct
ttccttcacatcaccagagagcccgtaactctcagaaagtcttcatggcc
tttcagagattcacgcgagccattcgaagaccttagccttgcagtaaaac
tgcaccctgaacccctggcatggcttcgaagatgttgaaaatgaaaactt
tttggatttaggcaaaaccctttcacttttaacaaagcctggaattatct
tgctgtgaacttaagaaatttagtttgacacgctaagccgggtaatggct
ttgttctagttaggaattcagccttcccctggagtggtagaacccattga
ttcacagagagaggggtcatagggcaccaccacttacggggaatgaaaat
tactgtggcttaatatttcaagggtagcatgctgcttttatctttcattt
ggagctgggattaaactaactctgagttacagggctgagggactggcgag
atacagaaacagattttgatataagaaaagggagactgtgaaacaatggg
agactagcctcatggagccacatgtcacccgaggcctctgcctgctcaca
tctaagtaagactgactctcccacatgcccgtgtttctatcaagtaacca
tccagagctgtctctttgtggttaatactggaaccaggtgtctggtacat
cacatttattggtcatccttggcatataaattcttttctttttatactga
aaatatttcttcataacaatgtattctgatcacagtttccccttcctcat
ctccttcaaggtcctccccactttctccactcatccaactctatgccttc
ttctctctctttagaaaacaaacaggcatgtaaaacaaaacaaaacaaac
aatccagaattttttttaagacaaagaaagaaaacatatacatgcagaca
caccacacttcacccaattacacatacttacgcaaccctataaataac
gaattcctatcaatcccatacctcttatcactttttttccttcatagttt
gtacagtagcccaaagagttttcaacctctgagctttggcttctaggtaa
aattgttctgaagattcatagtttgactttacctagggcagtaagctgcc
atctggcatataattctaacacttcattcagtaagaatatgtacattaaa
aaaagtcaggcataatagtgttcaaataacacttgcacgagacccagaat
cctaggctctaggcaactttccatttctaagctgagtgacagggtgtgca
atggacttcccagaccctatttctcacctagtggaaaaggtcgtattttc
aaccagatatgaaatgttatggtctatccaaaaataagacatttggccaa
cactaagtagatacttcatctttatccttgttgcttgatgttaaagataa
agaagtatttaaaagtcagagaattctttaccagctataaagcatctatg
ccaatgccctccttggttttctggacatcacagtgggatagtcattgttg
ttcccatttcacagggggaaaaaaatgagacacaaagaggctgagtgctt
tgcctcaggtaacagaatcagaaaattttgcaagtctcaacctaactgga
ccctgatctgtctgtctttcaatatcacaatggccacagtgaagcttgga
gctcagaggacaggcaaacgcgacacagcctctcctaagccgtatctgcc
cagatgccttgaaattgctttagaacggaatgccaagcagggattatttg
gtatatcatttctgggtgtgtgtttttctgagcatttatagatctccgag
tttctaagaagctgagttttcctgataaaacaggacagatcatgataaat
gagcatctatgtaagcctagctgggagaggatgggactgtacatcccctc
ctgtgaagttaatcctgtttcttttagctatttctttattaagttatgaa
ggtcttgcagacaaaaaaaaaaaatgtggtgtcctcttgatgtgttttag
cacccttgcctcagaccggctcaatatcataagtggctcatctgaaccaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_55333003_55334103
seq2: B6Ng01-252K11.b_49_1146 (reverse)

seq1  GTTATTTATA-GGTTGTGTATGTATGTGT-ATTGTGTGTATGTGT-GTGT  47
      |||||||||| ||||| ||| |||||||| |||| ||| | |||| ||||
seq2  GTTATTTATAGGGTTGCGTAAGTATGTGTAATTGGGTG-AAGTGTGGTGT  49

seq1  GTCTGCATGTATATGTTTTTCTTTTTCTTTTGTCTTAAAAAAAATTCTGG  97
      ||||||||||||||| ||||||||    ||||||||||||||||||||||
seq2  GTCTGCATGTATATG-TTTTCTTT---CTTTGTCTTAAAAAAAATTCTGG  95

seq1  ATTGTTTGTTTTGTTTTGTTTTAACATGCCTGTTTGTTTTCTAAAGAGAG  147
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTGTTTGTTTTGTTTTGTTTT-ACATGCCTGTTTGTTTTCTAAAGAGAG  144

seq1  AGAAGAAAGGCATAGAGTTGGATGAGTGGAG-AAGTGGGGAGGACCTTGA  196
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGAAG-AAGGCATAGAGTTGGATGAGTGGAGAAAGTGGGGAGGACCTTGA  193

seq1  AGGAGATGAGGGAGGGGAAACTGTGATCAGAATACATTGTTATGAAGAAA  246
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGAGGAAGGGGAAACTGTGATCAGAATACATTGTTATGAAGAAA  243

seq1  TATTTTCAGTATAAAAAGAAAAGAATTTATATGCCAAGGATGACCAATAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAGTATAAAAAGAAAAGAATTTATATGCCAAGGATGACCAATAA  293

seq1  ATGTGATGTACCAGACACCTGGTTCCAGTATTAACCACAAAGAGACAGCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATGTACCAGACACCTGGTTCCAGTATTAACCACAAAGAGACAGCT  343

seq1  CTGGATGGTTACTTGATAGAAACACGGGCATGTGGGAGAGTCAGTCTTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGGTTACTTGATAGAAACACGGGCATGTGGGAGAGTCAGTCTTAC  393

seq1  TTAGATGTGAGCAGGCAGAGGCCTCGGGTGACATGTGGCTCCATGAGGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTGAGCAGGCAGAGGCCTCGGGTGACATGTGGCTCCATGAGGCT  443

seq1  AGTCTCCCATTGTTTCACAGTCTCCCTTTTCTTATATCAAAATCTGTTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCATTGTTTCACAGTCTCCCTTTTCTTATATCAAAATCTGTTTC  493

seq1  TGTATCTCGCCAGTCCCTCAGCCCTGTAACTCAGAGTTAGTTTAATCCCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTCGCCAGTCCCTCAGCCCTGTAACTCAGAGTTAGTTTAATCCCA  543

seq1  GCTCCAAATGAAAGATAAAAGCAGCATGCTACCCTTGAAATATTAAGCCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAATGAAAGATAAAAGCAGCATGCTACCCTTGAAATATTAAGCCA  593

seq1  CAGTAATTTTCATTCCCCGTAAGTGGTGGTGCCCTATGACCCCTCTCTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTTTCATTCCCCGTAAGTGGTGGTGCCCTATGACCCCTCTCTCT  643

seq1  GTGAATCAATGGGTTCTACCACTCCAGGGGAAGGCTGAATTCCTAACTAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCAATGGGTTCTACCACTCCAGGGGAAGGCTGAATTCCTAACTAG  693

seq1  AACAAAGCCATTACCCGGCTTAGCGTGTCAAACTAAATTTCTTAAGTTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCCATTACCCGGCTTAGCGTGTCAAACTAAATTTCTTAAGTTCA  743

seq1  CAGCAAGATAATTCCAGGCTTTGTTAAAAGTGAAAGGGTTTTGCCTAAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGATAATTCCAGGCTTTGTTAAAAGTGAAAGGGTTTTGCCTAAAT  793

seq1  CCAAAAAGTTTTCATTTTCAACATCTTCGAAGCCATGCCAGGGGTTCAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGTTTTCATTTTCAACATCTTCGAAGCCATGCCAGGGGTTCAGG  843

seq1  GTGCAGTTTTACTGCAAGGCTAAGGTCTTCGAATGGCTCGCGTGAATCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTTTTACTGCAAGGCTAAGGTCTTCGAATGGCTCGCGTGAATCTC  893

seq1  TGAAAGGCCATGAAGACTTTCTGAGAGTTACGGGCTCTCTGGTGATGTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCCATGAAGACTTTCTGAGAGTTACGGGCTCTCTGGTGATGTGA  943

seq1  AGGAAAGAGGTTTTAAGATTGTCAACTTTATATATTCTTTCTTAAAATTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAGGTTTTAAGATTGTCAACTTTATATATTCTTTCTTAAAATTC  993

seq1  TCTGCCTCTGGGATTTGCTGTAATTTACTGGCCTTCCTCTCCCATCCCAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTGGGATTTGCTGTAATTTACTGGCCTTCCTCTCCCATCCCAG  1043

seq1  TCTTTGCCAGCAGTTCCTATGCCAATTTTATATCCACCTCCCACCACCTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCAGCAGTTCCTATGCCAATTTTATATCCACCTCCCACCACCTG  1093

seq1  AATTC  1101
      |||||
seq2  AATTC  1098

seq1: chr12_55142894_55143999
seq2: B6Ng01-252K11.g_67_1166

seq1  GAATTCCTATCAATCCCATACCTCTTATCACTTTTTTTCCTTCATAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCAATCCCATACCTCTTATCACTTTTTTTCCTTCATAGTTT  50

seq1  GTACAGTAGCCCAAAGAGTTTTCAACCTCTGAGCTTTGGCTTCTAGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTAGCCCAAAGAGTTTTCAACCTCTGAGCTTTGGCTTCTAGGTAA  100

seq1  AATTGTTCTGAAGATTCATAGTTTGACTTTACCTAGGGCAGTAAGCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTCTGAAGATTCATAGTTTGACTTTACCTAGGGCAGTAAGCTGCC  150

seq1  ATCTGGCATATAATTCTAACACTTCATTCAGTAAGAATATGTACATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCATATAATTCTAACACTTCATTCAGTAAGAATATGTACATTAAA  200

seq1  AAAAGTCAGGCATAATAGTGTTCAAATAACACTTGCACGAGACCCAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAGGCATAATAGTGTTCAAATAACACTTGCACGAGACCCAGAAT  250

seq1  CCTAGGCTCTAGGCAACTTTCCATTTCTAAGCTGAGTGACAGGGTGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCTCTAGGCAACTTTCCATTTCTAAGCTGAGTGACAGGGTGTGCA  300

seq1  ATGGACTTCCCAGACCCTATTTCTCACCTAGTGGAAAAGGTCGTATTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTCCCAGACCCTATTTCTCACCTAGTGGAAAAGGTCGTATTTTC  350

seq1  AACCAGATATGAAATGTTATGGTCTATCCAAAAATAAGACATTTGGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATATGAAATGTTATGGTCTATCCAAAAATAAGACATTTGGCCAA  400

seq1  CACTAAGTAGATACTTCATCTTTATCCTTGTTGCTTGATGTTAAAGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGTAGATACTTCATCTTTATCCTTGTTGCTTGATGTTAAAGATAA  450

seq1  AGAAGTATTTAAAAGTCAGAGAATTCTTTACCAGCTATAAAGCATCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATTTAAAAGTCAGAGAATTCTTTACCAGCTATAAAGCATCTATG  500

seq1  CCAATGCCCTCCTTGGTTTTCTGGACATCACAGTGGGATAGTCATTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCCCTCCTTGGTTTTCTGGACATCACAGTGGGATAGTCATTGTTG  550

seq1  TTCCCATTTCACAGGGGGAAAAAAATGAGACACAAAGAGGCTGAGTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTTCACAGGGGGAAAAAAATGAGACACAAAGAGGCTGAGTGCTT  600

seq1  TGCCTCAGGTAACAGAATCAGAAAATTTTGCAAGTCTCAACCTAACTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGGTAACAGAATCAGAAAATTTTGCAAGTCTCAACCTAACTGGA  650

seq1  CCCTGATCTGTCTGTCTTTCAATATCACAATGGCCACAGTGAAGCTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATCTGTCTGTCTTTCAATATCACAATGGCCACAGTGAAGCTTGGA  700

seq1  GCTCAGAGGACAGGCAAACGCGACACAGCCTCTCCTAAGCCGTATCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGGACAGGCAAACGCGACACAGCCTCTCCTAAGCCGTATCTGCC  750

seq1  CAGATGCCTTGAAATTGCTTTAGAACGGAATGCCAAGCAGGGATTATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCCTTGAAATTGCTTTAGAACGGAATGCCAAGCAGGGATTATTTG  800

seq1  GTATATCATTTCTGGGTGTGTGTTTTTCTGAGCATTTATAGATCTCCGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCATTTCTGGGTGTGTGTTTTTCTGAGCATTTATAGATCTCCGAG  850

seq1  TTTCTAAGAAGCTGAGTTTTCCTGATAAAACAGGACAGATCATGATAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGAAGCTGAGTTTTCCTGATAAAACAGGACAGATCATGATAAAT  900

seq1  GAGCATCTATGTAAGCCTAGCTGGGAGAGGATGGGACTGTAACAT-CCCT  949
      |||||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  GAGCATCTATGTAAGCCTAGCTGGGAGAGGATGGGACTGT-ACATCCCCT  949

seq1  CCTGTGAAGTTAATCCTGTTTCTTTTAGCTATTTCTTTATT-AGTTAATG  998
      ||||||||||||||||||||||||||||||||||||||||| |||||   
seq2  CCTGTGAAGTTAATCCTGTTTCTTTTAGCTATTTCTTTATTAAGTTATGA  999

seq1  AGGTCTTGCAGACAAAAAAAAAAAAAAAATGT-GTGT-CTC-TGATGGTG  1045
      |||||||||||||    ||||||||||||||| |||| ||| |||| |||
seq2  AGGTCTTGCAGAC----AAAAAAAAAAAATGTGGTGTCCTCTTGAT-GTG  1044

seq1  TTTTAGCACCCTTGCCTCCAGGAACGGCTTCAAATATTCATAAAGTGGCT  1095
      ||||||||||||||||||   || |||||   |||| |||| ||||||||
seq2  TTTTAGCACCCTTGCCTC--AGACCGGCT--CAATA-TCAT-AAGTGGCT  1088

seq1  CATCTG-ACCAA  1106
      |||||| |||||
seq2  CATCTGAACCAA  1100