BAC Information

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BAC

Clone NameB6Ng01-252M19
Chromosome12 (Build37)
Map Location 63,334,236 - 63,335,379
singlet/doubletsinglet
Overlap geneLOC622746
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403, LOC665713
Downstream geneLOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252M19.bB6Ng01-252M19.g
ACCGA059699GA059700
length1,1451,172
definitionB6Ng01-252M19.b B6Ng01-252M19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatatttttattgtaaagtatattaaaaatcccttttctacctt
tttgggacatgtaaacatgttactttattcaaaataaccttctatacaaa
acttatattagagcagaatactgtctaattcataacattactcattatta
agcttttgccttttcctgtgtatccatagctttcccagctttcagtaacc
accattttactttcaaattctgtataactaaatagtttaaagtttgcatg
agtgaagtcatttctccagactttatagtctagggttcattccatattgt
tgaaaaaaatcacagaattagatatatttggactaaataatacccattct
ttcatttacatattttatatggaacacagcttgctataattagaaattga
aagaacctagtggggaaacccccactctgttcccaattcagcatgcatcc
aagaatcacgaacagatgaccatcttgatgtaaaaacaggaggtagttta
atggcggagctccttggagaaacatatctcatgcaggagacagtggtttc
gaccacgaggcttggaagctaggtttttatagaaaaggggctggggctgg
gggaggaattggtgcggtttcacatgattggttcatttaaacatcagcag
cctgttaacatttaacttaggtcagaagagcgggatatagagaggcgcca
ggccatgtcattctctttatctctctttatctttatggccaagtagccac
aggaatgccttaatgaagggcctgcctgggcatgtcctggcctgttctgc
tatgttctcagccccaggtttcaaagctcacaaacaactctttgggctat
ttgatatacattacatgaatcacaggtctcaagttttattttctttcaaa
ataagctcatattttccatgtgttacgcttatctgttaaccctaagacat
tgacattactttttctgataagtctgaacaaaaatacaattacccatcat
tgacactgagaattccagtggctagactaaacttctattgctttctcttc
tgtgttatttagatatctaggtccctgttgtgagccgtccaggcggctca
caagggacaggttacacctggaatgacaagctggcactgaagaga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggga
ttgcaggcttgtacaaccactctggaaatcagtctggcggtttctcagaa
aattggacatagtactaccagaggatccagcaatacctctcctcggcatt
tatccagaagatgccccaactggtaagaaggacacatgctccactatgtt
catagcagccttatttataatagccagaagctggaaagaacccagatgcc
cctcaacagaggaatggatacagaaaatgtggtacatctacacaatggag
tactactcagctattaaaaagaatgaatttatgaaattcctagccaaatg
gatggacctggagggcatcatcctgagtgaggtaacacattcacaaagga
actcacacaatatgtactcactgataagtggatattagccccaaacctag
gattcccaagatataaggtacaatttgctaaacatatgaaactcaagaag
aatgaagactgaagtgtggacactatgcccctccttagaattgggaacaa
aacacccatggaaggagttacagagacaaagtttggagctgagatgaaag
gatggaccatgtagagactgccatatccagggatccaccccataatcagc
atccaaacgctgacaccattgtataccctagcaagattttattgaaagga
cccagatgtagctatctcttctgagagtatgccggggcctagcaaacaca
gaagtggatgctcacagtcagctaatggatggatcacaggctcccattgg
aggagctagagaaagtaacccaggagctaaagggatctgcacctataggt
gaacacatatgactacagtacccgagctctgactctactgcatatgtatc
aaagatgctagtcgcatcacttgaagaggaagacccaatgacgttaactt
gtatggcccaatacggaactcaggtctaaggcaatgcgtgtctactgcaa
ctgcatggccataccgaatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63334236_63335379
seq2: B6Ng01-252M19.b_46_1190 (reverse)

seq1  TCTCTTTCAGTGCCAGCCTGCTATT-CAGGTGT-ACCTGT-CCTTGTGAG  47
      |||| |||||||||||| ||  ||| ||||||| |||||| |||||||||
seq2  TCTC-TTCAGTGCCAGCTTGTCATTCCAGGTGTAACCTGTCCCTTGTGAG  49

seq1  CCG-CTGGACGGCTCACAACAGG--ACTAGATATCCTAAATAACACAGAA  94
      ||| |||||||||||||||||||   |||||||| |||||||||||||||
seq2  CCGCCTGGACGGCTCACAACAGGGACCTAGATAT-CTAAATAACACAGAA  98

seq1  GAGAAAGC-ATAGAAGTTTAGTCTAGCCACTGGAATTTCTCAGTTGTCAA  143
      |||||||| |||||||||||||||||||||||||| ||||||| ||||||
seq2  GAGAAAGCAATAGAAGTTTAGTCTAGCCACTGGAA-TTCTCAG-TGTCAA  146

seq1  TGATGGGTAATTGTATTTTTGTTCAGACTTTATCAGAAAAAGTAATGTTC  193
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  TGATGGGTAATTGTATTTTTGTTCAGAC-TTATCAGAAAAAGTAATG-TC  194

seq1  AATGTCTTAGGGTTAACAGATAAGCGTAACACATGGAAAATATGAGCTTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTAGGGTTAACAGATAAGCGTAACACATGGAAAATATGAGCTTA  244

seq1  TTTTGAAAGAAAATAAAACTTGAGACCTGTGATTCATGTAATGTATATCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAGAAAATAAAACTTGAGACCTGTGATTCATGTAATGTATATCA  294

seq1  AATAGCCCAAAGAGTTGTTTGTGAGCTTTGAAACCTGGGGCTGAGAACAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCCAAAGAGTTGTTTGTGAGCTTTGAAACCTGGGGCTGAGAACAT  344

seq1  AGCAGAACAGGCCAGGACATGCCCAGGCAGGCCCTTCATTAAGGCATTCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACAGGCCAGGACATGCCCAGGCAGGCCCTTCATTAAGGCATTCC  394

seq1  TGTGGCTACTTGGCCATAAAGATAAAGAGAGATAAAGAGAATGACATGGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTACTTGGCCATAAAGATAAAGAGAGATAAAGAGAATGACATGGC  444

seq1  CTGGCGCCTCTCTATATCCCGCTCTTCTGACCTAAGTTAAATGTTAACAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGCCTCTCTATATCCCGCTCTTCTGACCTAAGTTAAATGTTAACAG  494

seq1  GCTGCTGATGTTTAAATGAACCAATCATGTGAAACCGCACCAATTCCTCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGATGTTTAAATGAACCAATCATGTGAAACCGCACCAATTCCTCC  544

seq1  CCCAGCCCCAGCCCCTTTTCTATAAAAACCTAGCTTCCAAGCCTCGTGGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCCAGCCCCTTTTCTATAAAAACCTAGCTTCCAAGCCTCGTGGT  594

seq1  CGAAACCACTGTCTCCTGCATGAGATATGTTTCTCCAAGGAGCTCCGCCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACCACTGTCTCCTGCATGAGATATGTTTCTCCAAGGAGCTCCGCCA  644

seq1  TTAAACTACCTCCTGTTTTTACATCAAGATGGTCATCTGTTCGTGATTCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTACCTCCTGTTTTTACATCAAGATGGTCATCTGTTCGTGATTCT  694

seq1  TGGATGCATGCTGAATTGGGAACAGAGTGGGGGTTTCCCCACTAGGTTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCATGCTGAATTGGGAACAGAGTGGGGGTTTCCCCACTAGGTTCT  744

seq1  TTCAATTTCTAATTATAGCAAGCTGTGTTCCATATAAAATATGTAAATGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTCTAATTATAGCAAGCTGTGTTCCATATAAAATATGTAAATGA  794

seq1  AAGAATGGGTATTATTTAGTCCAAATATATCTAATTCTGTGATTTTTTTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGGTATTATTTAGTCCAAATATATCTAATTCTGTGATTTTTTTC  844

seq1  AACAATATGGAATGAACCCTAGACTATAAAGTCTGGAGAAATGACTTCAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATGGAATGAACCCTAGACTATAAAGTCTGGAGAAATGACTTCAC  894

seq1  TCATGCAAACTTTAAACTATTTAGTTATACAGAATTTGAAAGTAAAATGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAAACTTTAAACTATTTAGTTATACAGAATTTGAAAGTAAAATGG  944

seq1  TGGTTACTGAAAGCTGGGAAAGCTATGGATACACAGGAAAAGGCAAAAGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACTGAAAGCTGGGAAAGCTATGGATACACAGGAAAAGGCAAAAGC  994

seq1  TTAATAATGAGTAATGTTATGAATTAGACAGTATTCTGCTCTAATATAAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATGAGTAATGTTATGAATTAGACAGTATTCTGCTCTAATATAAG  1044

seq1  TTTTGTATAGAAGGTTATTTTGAATAAAGTAACATGTTTACATGTCCCAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATAGAAGGTTATTTTGAATAAAGTAACATGTTTACATGTCCCAA  1094

seq1  AAAGGTAGAAAAGGGATTTTTAATATACTTTACAATAAAAATATAGAATT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAGAAAAGGGATTTTTAATATACTTTACAATAAAAATATAGAATT  1144

seq1  C  1144
      |
seq2  C  1145