BAC Information

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BAC

Clone NameB6Ng01-253A19
Chromosome12 (Build37)
Map Location 36,224,683 - 36,366,697
singlet/doubletdoublet
Overlap geneLOC100043575
Upstream gene4921508M14Rik, Prps1l1, Snx13, Ahr
Downstream geneLOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253A19.bB6Ng01-253A19.g
ACCGA059888GA059889
length1,1221,165
definitionB6Ng01-253A19.b B6Ng01-253A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,365,585 - 36,366,697)(36,224,683 - 36,225,827)
sequence
gaattcctgatgctttgggcagaggccagaggtttcagtaaacaagctgt
tgtggggggccagccaagaggtgtgggtgtaattctttggaaaggtcctg
agggcatgcaagcctcaagtcagatgtctgttgatgctactggtttgaag
aagctgtaagaggcttttctgcagtctgggaaccattcccccagagcaat
tgacctgtgcactgctattgctttatatcaacatgactacctgtgactgt
gggtgtgcccactgtggatactggttgcaattttctcattcttacaccag
tgtgaagggtgctattgtttggaataaatgtagaagtaatggctgcctca
agcaatagggccaattcttagatggagtggttctgtcctttgttaagttt
ttaggcacaaattttaaagggttctatttaaacgtaaaaaaggttctatt
tgtatatggactcactttaaaatttattgaagtacttcatacatctgtct
ttagtatcacaggaaaaaatgctctatggtgtgttatcataaacagttgt
aagttactccttttttcttcatcgtttagaacactctacaactacaaaac
acctagaatcgattttatgatgatttcagatgtgttcatagaggttttta
aaattgattcatcccgtgattatcatgaaagcatgccattgtctttttct
aactggtcacccccccccccccagataactagagactatcagctatggta
atggaaaccttttcataaaattctgaaatttgaaattaaatttataattg
aaattcttggaattagtctgttttgtcaagaggttataaaaggtgcaagc
ctcaatgtggatttaattggagctgagtaatgacatgcaacggaagattt
cagttttcaggataacattgctggtctgcttaaatgagctgtgtttaact
gcagtaaggctaggagaaagccagcttggaattccctggactaatataat
gcctccattcctggttctgctgatccctcatcccagttttcctcccatcc
ccagtatggtccaccttgaaatgggtgagctacattaccttctaggtaat
aaggatttggattgcttctttt
gaattctgtgagtataggttagactgacaagaataattggtattattctg
gaaaaaaggacctataataagagcatgatttgtcaaaattatttcccttt
acataggaataaccaagaggtttttattcacatttatttattgattatta
tttattgattataggaggggtcctatacgtatatgagcacatgacatgtg
tcatggcacatgtgtaggtcagagattaacatgtgggagtgaatgctttc
cttcttccatgcaagttctgggcatgggactcaggcaatcaattggtctt
gagtacctttattcaccaggaaaagagctagcctaacatgctgtgcgtct
aaattttaatcttttattttctgatgctcttattttaatatatatatatg
aaattcagtcatggggaagttgatggagaggttcatgtttcacatactaa
gattcatatcatacttagtaaacattttactaaaatatatgtgtaaagat
aaatttctgtaaagattcaactttagagataattatatttgaagttgcaa
taatgatgtgcactctttgcaatttaagacaaaatctagaagaaacttaa
aaggtgatgaatttattctaaaaaagaaaatgatattaattttggaaatg
ttgataaagatgaatggtcacagaactagatctagaaattcatattttgt
ttgctaaactggaagggctaacatatatttatgcatagtaaatcacacag
taatatattcttgagaaatacttaacttgtttttgatcagtcttggagac
agtgatccttaatctgttttacatagtgtgctttcctgaaagagccaaag
aatttatgtatggctgattgtgtaattcaagaattagcctgagcacaaat
tactcatatatatgtatctacacatataaagaaagcactgataacatttc
atacaaatactttctcatcagcccttaactattggttgattttctccaat
atgtgctctccttgggtaaaaaattaccaagactttataatattatggtg
ccatcagatgtttatgagttacatactaaaatgatgcaattttataatca
catttttggaagagagtggctaatgactaaggaaggtgatctgtaagcta
tccaaatagaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_36365585_36366697
seq2: B6Ng01-253A19.b_45_1166 (reverse)

seq1  AAAAGAAACCATCCAAAT-CTTATTACTTAG-AGTTAATGTTAGCTCA-C  47
      ||||||| | |||||||| |||||||| ||| || ||||| ||||||| |
seq2  AAAAGAAGCAATCCAAATCCTTATTACCTAGAAGGTAATG-TAGCTCACC  49

seq1  CATTTCAA-GTTGACCATACT-GTGAT-GGAGGAAAAACTGGATGA-GGA  93
      |||||||| || ||||||||| | ||| |||||||||   |||||| |||
seq2  CATTTCAAGGTGGACCATACTGGGGATGGGAGGAAAACTGGGATGAGGGA  99

seq1  TCAGCAGAA-CAGGAATGGA-GCATTATATTAGTCCAGGGAA-TCCAAGC  140
      ||||||||| |||||||||| ||||||||||||||||||||| |||||||
seq2  TCAGCAGAACCAGGAATGGAGGCATTATATTAGTCCAGGGAATTCCAAGC  149

seq1  TGGCTTTCTCCTAGCCTTACTGCAGTTAAACACAGCTCATTTAAGCAGAC  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCTCCTAGCCTTACTGCAGTTAAACACAGCTCATTTAAGCAGAC  199

seq1  CAGCAATGTTATCCTGAAAACTGAAATCTTCCGTTGCATGTCATTACTCA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGTTATCCTGAAAACTGAAATCTTCCGTTGCATGTCATTACTCA  249

seq1  GCTCCAATTAAATCCACATTGAGGCTTGCACCTTTTATAACCTCTTGACA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAATTAAATCCACATTGAGGCTTGCACCTTTTATAACCTCTTGACA  299

seq1  AAACAGACTAATTCCAAGAATTTCAATTATAAATTTAATTTCAAATTTCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACTAATTCCAAGAATTTCAATTATAAATTTAATTTCAAATTTCA  349

seq1  GAATTTTATGAAAAGGTTTCCATTACCATAGCTGATAGTCTCTAGTTATC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTATGAAAAGGTTTCCATTACCATAGCTGATAGTCTCTAGTTATC  399

seq1  TGGGGGGGGGGGGGTGACCAGTTAGAAAAAGACAATGGCATGCTTTCATG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGGGGGGGTGACCAGTTAGAAAAAGACAATGGCATGCTTTCATG  449

seq1  ATAATCACGGGATGAATCAATTTTAAAAACCTCTATGAACACATCTGAAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCACGGGATGAATCAATTTTAAAAACCTCTATGAACACATCTGAAA  499

seq1  TCATCATAAAATCGATTCTAGGTGTTTTGTAGTTGTAGAGTGTTCTAAAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATAAAATCGATTCTAGGTGTTTTGTAGTTGTAGAGTGTTCTAAAC  549

seq1  GATGAAGAAAAAAGGAGTAACTTACAACTGTTTATGATAACACACCATAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAAAAAAGGAGTAACTTACAACTGTTTATGATAACACACCATAG  599

seq1  AGCATTTTTTCCTGTGATACTAAAGACAGATGTATGAAGTACTTCAATAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTTTCCTGTGATACTAAAGACAGATGTATGAAGTACTTCAATAA  649

seq1  ATTTTAAAGTGAGTCCATATACAAATAGAACCTTTTTTACGTTTAAATAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGTGAGTCCATATACAAATAGAACCTTTTTTACGTTTAAATAG  699

seq1  AACCCTTTAAAATTTGTGCCTAAAAACTTAACAAAGGACAGAACCACTCC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTAAAATTTGTGCCTAAAAACTTAACAAAGGACAGAACCACTCC  749

seq1  ATCTAAGAATTGGCCCTATTGCTTGAGGCAGCCATTACTTCTACATTTAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGAATTGGCCCTATTGCTTGAGGCAGCCATTACTTCTACATTTAT  799

seq1  TCCAAACAATAGCACCCTTCACACTGGTGTAAGAATGAGAAAATTGCAAC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACAATAGCACCCTTCACACTGGTGTAAGAATGAGAAAATTGCAAC  849

seq1  CAGTATCCACAGTGGGCACACCCACAGTCACAGGTAGTCATGTTGATATA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCCACAGTGGGCACACCCACAGTCACAGGTAGTCATGTTGATATA  899

seq1  AAGCAATAGCAGTGCACAGGTCAATTGCTCTGGGGGAATGGTTCCCAGAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATAGCAGTGCACAGGTCAATTGCTCTGGGGGAATGGTTCCCAGAC  949

seq1  TGCAGAAAAGCCTCTTACAGCTTCTTCAAACCAGTAGCATCAACAGACAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAAAGCCTCTTACAGCTTCTTCAAACCAGTAGCATCAACAGACAT  999

seq1  CTGACTTGAGGCTTGCATGCCCTCAGGACCTTTCCAAAGAATTACACCCA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTGAGGCTTGCATGCCCTCAGGACCTTTCCAAAGAATTACACCCA  1049

seq1  CACCTCTTGGCTGGCCCCCCACAACAGCTTGTTTACTGAAACCTCTGGCC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTTGGCTGGCCCCCCACAACAGCTTGTTTACTGAAACCTCTGGCC  1099

seq1  TCTGCCCAAAGCATCAGGAATTC  1113
      |||||||||||||||||||||||
seq2  TCTGCCCAAAGCATCAGGAATTC  1122

seq1: chr12_36224683_36225827
seq2: B6Ng01-253A19.g_63_1227

seq1  GAATTCTGTGAGTATAGGTTAGACTGACAAGAATAATTGGTATTATTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAGTATAGGTTAGACTGACAAGAATAATTGGTATTATTCTG  50

seq1  GAAAAAAGGACCTATAATAAGAGCATGATTTGTCAAAATTATTTCCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGGACCTATAATAAGAGCATGATTTGTCAAAATTATTTCCCTTT  100

seq1  ACATAGGAATAACCAAGAGGTTTTTATTCACATTTATTTATTGATTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGAATAACCAAGAGGTTTTTATTCACATTTATTTATTGATTATTA  150

seq1  TTTATTGATTATAGGAGGGGTCCTATACGTATATGAGCACATGACATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGATTATAGGAGGGGTCCTATACGTATATGAGCACATGACATGTG  200

seq1  TCATGGCACATGTGTAGGTCAGAGATTAACATGTGGGAGTGAATGCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCACATGTGTAGGTCAGAGATTAACATGTGGGAGTGAATGCTTTC  250

seq1  CTTCTTCCATGCAAGTTCTGGGCATGGGACTCAGGCAATCAATTGGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCATGCAAGTTCTGGGCATGGGACTCAGGCAATCAATTGGTCTT  300

seq1  GAGTACCTTTATTCACCAGGAAAAGAGCTAGCCTAACATGCTGTGCGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACCTTTATTCACCAGGAAAAGAGCTAGCCTAACATGCTGTGCGTCT  350

seq1  AAATTTTAATCTTTTATTTTCTGATGCTCTTATTTTAATATATATATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAATCTTTTATTTTCTGATGCTCTTATTTTAATATATATATATG  400

seq1  AAATTCAGTCATGGGGAAGTTGATGGAGAGGTTCATGTTTCACATACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGTCATGGGGAAGTTGATGGAGAGGTTCATGTTTCACATACTAA  450

seq1  GATTCATATCATACTTAGTAAACATTTTACTAAAATATATGTGTAAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATATCATACTTAGTAAACATTTTACTAAAATATATGTGTAAAGAT  500

seq1  AAATTTCTGTAAAGATTCAACTTTAGAGATAATTATATTTGAAGTTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGTAAAGATTCAACTTTAGAGATAATTATATTTGAAGTTGCAA  550

seq1  TAATGATGTGCACTCTTTGCAATTTAAGACAAAATCTAGAAGAAACTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGTGCACTCTTTGCAATTTAAGACAAAATCTAGAAGAAACTTAA  600

seq1  AAGGTGATGAATTTATTCTAAAAAAGAAAATGATATTAATTTTGGAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATGAATTTATTCTAAAAAAGAAAATGATATTAATTTTGGAAATG  650

seq1  TTGATAAAGATGAATGGTCACAGAACTAGATCTAGAAATTCATATTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAGATGAATGGTCACAGAACTAGATCTAGAAATTCATATTTTGT  700

seq1  TTGCTAAACTGGAAGGGCTAACATATATTTATGCATAGTAAATCACACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAACTGGAAGGGCTAACATATATTTATGCATAGTAAATCACACAG  750

seq1  TAATATATTCTTGAGAAATACTTAACTTGTTTTTGATCAGTCTTGGAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTCTTGAGAAATACTTAACTTGTTTTTGATCAGTCTTGGAGAC  800

seq1  AGTGATCCTTAATCTGTTTTACATAGTGTGCTTTCCTGAAAGAGCCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCCTTAATCTGTTTTACATAGTGTGCTTTCCTGAAAGAGCCAAAG  850

seq1  AATTTATGTATGGCTGATTGTGTAATTCAAGAA-TAGCCTGAGCACAAAT  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATTTATGTATGGCTGATTGTGTAATTCAAGAATTAGCCTGAGCACAAAT  900

seq1  TACTCATATATATGTATCTACACATATAAAGAAAGCACTGATAACATTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATATATATGTATCTACACATATAAAGAAAGCACTGATAACATTTC  950

seq1  ATACAAATACTTTCTCATCAGCCCTTAACTATTGG-TGA-TTTCTCCATT  997
      ||||||||||||||||||||||||||||||||||| ||| |||||||| |
seq2  ATACAAATACTTTCTCATCAGCCCTTAACTATTGGTTGATTTTCTCCAAT  1000

seq1  ATGTGCTCTCCTTGG--TAAAAATTA-CAAGACTTTATAATA-TAT-GTG  1042
      |||||||||||||||   |||||||| ||||||||||||||| ||| |||
seq2  ATGTGCTCTCCTTGGGTAAAAAATTACCAAGACTTTATAATATTATGGTG  1050

seq1  CAATCAG-TGTTTAT-AGTTACATACTAAAATGATGCATTTTTATAATCA  1090
      | ||||| ||||||| |||||||||||||||||||||| |||||||||||
seq2  CCATCAGATGTTTATGAGTTACATACTAAAATGATGCAATTTTATAATCA  1100

seq1  CATTTTTGGGA-AGAGT-GCT-ATG-CT-AGGAAGGTG--CTGTAAGGCA  1133
      ||||||||| | ||||| ||| ||| || |||||||||  |||||||  |
seq2  CATTTTTGGAAGAGAGTGGCTAATGACTAAGGAAGGTGATCTGTAAGCTA  1150

seq1  TCCAAA---AAAAAA  1145
      ||||||   ||||||
seq2  TCCAAATAGAAAAAA  1165