BAC Information

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BAC

Clone NameB6Ng01-254I20
Chromosome12 (Build37)
Map Location 113,283,895 - 113,468,346
singlet/doubletdoublet
Overlap geneTdrd9, A530050D06Rik, Kif26a
Upstream geneRcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943
Downstream geneA730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254I20.bB6Ng01-254I20.g
ACCGA060990GA060991
length1,1641,050
definitionB6Ng01-254I20.b B6Ng01-254I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,283,895 - 113,285,051)(113,467,375 - 113,468,346)
sequence
gaattcttggtaagagcaagcctgtgagacttgttcccagtgtaaccgaa
gccagagaagaggtgtagacaccagcagcttcatgggcaccttgagaaat
gagacaaagttagaggcagtggtggcagacaagaagcttgcaggtggctt
tgtagagccacagccatctctgctcagaggcagtgggtggtgaggcaggc
tggatgggccacacagagaccactctgctggaaggcaggcagaggctaca
ggccttgacggaacaagggttagaaaagcaggtttgagagctgctgtaga
tagtgcctaagggtatggacaggaagggctcgaactaactcaaagaggag
cccagggccggtgtggatcctgggtttgcctgtgccaccatcctctgagg
ttcactctgggctggcatgctccatcaccgggccagtggggcgacagctt
gtgccctgctgcttattcccagatgtgtgtggattgagaaggagagcatc
aattctgtcgtcatcagtgacagccctgccgacctgcaccagaggatgct
ggttgcagcttcactctcagttaacgagaccggtaatgagacggcttctg
ttacctgttgtctctcgtttgccttgacttgacatcagtggtaaagtcat
gcgtgcgtattcactccatcagctgttgtcccttttaagaaaatgttgtg
tgtctgtgtgtgttgtgtgtgtctctgtgtgttgtgtgtgttgtatgtgt
gtgcacagaagcccatggaagtcagaataggtatcagatctagaactgga
gttagaaatggttatcattctgagcgcttttgtcggcgctgagaaatgaa
cctgggtcctgtgccagagcagcgagcactcttctacagctgagccgtct
ctccgacttctcgttaagctctttttctgagtgcagtgcctaatgcagat
tttaagaaacaaagtgttactacttttttgtttttgtagaaggatggtgg
gaattcagtgttattgttttcttcatgcctgttctacaagtttcttggct
tctaggaaatcctgctagatctattaagaggctggatgaagcagaacttc
ttggttaactctttcatgcgtaatacctagcggtgtcattgagtttgggt
tgtgaatgcaagga
gaattcctgaaggacttggtaactctacagagctccttcagcaaatagca
ggtctcaggacactatcaaggcccagagttctagagagacagtcattccc
tccccccactacttgaggccttcctgtcttctgtgttgtagagcatctca
ccttccatacaggaggccagagctcccaaatgctgggcaagcctgttggt
tctgacctagtgaccttggccacaaagtccctgtccaagctttctgcttt
gtatagtccccaacccccaccatcacttcccccaccccccacagacagac
agacagacagagacacagagagagacagaggcatggacacaggcacacac
agagacatggacatacatacagagacacacacatggacacagacatggga
cacacacacacattcacagagacatggacacagacacaaacgctgagaca
cacagagagacacatgtctggaagctgcagacttggtatggaggaagtaa
gagctggagaccagtcctccgttcacaccccatcttgaatggcttcaagc
actgaagtggttaaagcctcccagcccgtctgatcaattcattatcattt
ctaatacagatcaatactcactagcacccatctgacaaagcctacagcct
tcagacccaaaacatgaaagacttcctaagctgctgcccagcccctcccc
acgccgcatcccatcgtgtttcctgatcgctgccctggaaggatacaaat
cgatgccttggcattgatcacctttcctcaggcagccacagacacgtgcc
caccccttccccccaaactgaatctctgtctcccacgtaaatggggggcc
tcttaaaaagcctttgattgctcttccacccccaaggtccactgccctag
aggccgctatccctgacacgtgctgtggcgcacagctttgtcttcagtaa
taaacaggattttgtctttcctgttcagccctaatgttctaaattttatt
cagggccaaggtggcagctaaatctgctttcctgggttggctgggctggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_113283895_113285051
seq2: B6Ng01-254I20.b_45_1208

seq1  GAATTCTTGGTAAGAGCAAGCCTGTGAGACTTGTTCCCAGTGTAACCGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTAAGAGCAAGCCTGTGAGACTTGTTCCCAGTGTAACCGAA  50

seq1  GCCAGAGAAGAGGTGTAGACACCAGCAGCTTCATGGGCACCTTGAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGAAGAGGTGTAGACACCAGCAGCTTCATGGGCACCTTGAGAAAT  100

seq1  GAGACAAAGTTAGAGGCAGTGGTGGCAGACAAGAAGCTTGCAGGTGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAGTTAGAGGCAGTGGTGGCAGACAAGAAGCTTGCAGGTGGCTT  150

seq1  TGTAGAGCCACAGCCATCTCTGCTCAGAGGCAGTGGGTGGTGAGGCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGCCACAGCCATCTCTGCTCAGAGGCAGTGGGTGGTGAGGCAGGC  200

seq1  TGGATGGGCCACACAGAGACCACTCTGCTGGAAGGCAGGCAGAGGCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGGCCACACAGAGACCACTCTGCTGGAAGGCAGGCAGAGGCTACA  250

seq1  GGCCTTGACGGAACAAGGGTTAGAAAAGCAGGTTTGAGAGCTGCTGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGACGGAACAAGGGTTAGAAAAGCAGGTTTGAGAGCTGCTGTAGA  300

seq1  TAGTGCCTAAGGGTATGGACAGGAAGGGCTCGAACTAACTCAAAGAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCTAAGGGTATGGACAGGAAGGGCTCGAACTAACTCAAAGAGGAG  350

seq1  CCCAGGGCCGGTGTGGATCCTGGGTTTGCCTGTGCCACCATCCTCTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCCGGTGTGGATCCTGGGTTTGCCTGTGCCACCATCCTCTGAGG  400

seq1  TTCACTCTGGGCTGGCATGCTCCATCACCGGGCCAGTGGGGCGACAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTGGGCTGGCATGCTCCATCACCGGGCCAGTGGGGCGACAGCTT  450

seq1  GTGCCCTGCTGCTTATTCCCAGATGTGTGTGGATTGAGAAGGAGAGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTGCTGCTTATTCCCAGATGTGTGTGGATTGAGAAGGAGAGCATC  500

seq1  AATTCTGTCGTCATCAGTGACAGCCCTGCCGACCTGCACCAGAGGATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTCGTCATCAGTGACAGCCCTGCCGACCTGCACCAGAGGATGCT  550

seq1  GGTTGCAGCTTCACTCTCAGTTAACGAGACCGGTAATGAGACGGCTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAGCTTCACTCTCAGTTAACGAGACCGGTAATGAGACGGCTTCTG  600

seq1  TTACCTGTTGTCTCTCGTTTGCCTTGACTTGACATCAGTGGTAAAGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTTGTCTCTCGTTTGCCTTGACTTGACATCAGTGGTAAAGTCAT  650

seq1  GCGTGCGTATTCACTCCATCAGCTGTTGTCCCTTTTAAGAAAATGTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGTATTCACTCCATCAGCTGTTGTCCCTTTTAAGAAAATGTTGTG  700

seq1  TGTCTGTGTGTGTTGTGTGTGTCTCTGTGTGTTGTGTGTGTTGTATGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTGTGTTGTGTGTGTCTCTGTGTGTTGTGTGTGTTGTATGTGT  750

seq1  GTGCACAGAAGCCCATGGAAGTCAGAATAGGTATCAGATCTAGAACTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAGAAGCCCATGGAAGTCAGAATAGGTATCAGATCTAGAACTGGA  800

seq1  GTTAGAAATGGTTATCATTCTGAGCGCTTTTGTCGGCGCTGAGAAATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAATGGTTATCATTCTGAGCGCTTTTGTCGGCGCTGAGAAATGAA  850

seq1  CCTGGGTCCTGTGCCAGAGCAGCGAGCACTC-TCTACAGCTGAGCCGTCT  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTGGGTCCTGTGCCAGAGCAGCGAGCACTCTTCTACAGCTGAGCCGTCT  900

seq1  CTCCGAC-TCTCGTTAAGCTC-TTTTCTGAGTGCAGTGCCTAATGCAGA-  946
      ||||||| ||||||||||||| ||||||||||||||||||||||||||| 
seq2  CTCCGACTTCTCGTTAAGCTCTTTTTCTGAGTGCAGTGCCTAATGCAGAT  950

seq1  TTTAAGAAACAAAGTGTTACTACTTTTT--GTTTTGTAGAAGGAT-GTGG  993
      ||||||||||||||||||||||||||||   |||||||||||||| ||||
seq2  TTTAAGAAACAAAGTGTTACTACTTTTTTGTTTTTGTAGAAGGATGGTGG  1000

seq1  GAATTCAGTGATTATTG-TTTCTTCATGCCTG-TCTACAAAGTTCTTGGC  1041
      |||||||||| |||||| |||||||||||||| |||||||  ||||||||
seq2  GAATTCAGTG-TTATTGTTTTCTTCATGCCTGTTCTACAAGTTTCTTGGC  1049

seq1  -TCTAGGAAACCCTGGTAAGATCTAATAAGAGGCTGAAGAAAGCAGGAAC  1090
       ||||||||| |||| | ||||||| |||||||||| |  |||||| |  
seq2  TTCTAGGAAATCCTGCT-AGATCTATTAAGAGGCTGGATGAAGCAGAACT  1098

seq1  TCTGGGTTACCTC-TTCATGCGTAAATACCTAAGCGTGGTCA-TGAGTTT  1138
      ||| ||||| ||| ||||||||| ||||||| ||||  |||| |||||||
seq2  TCTTGGTTAACTCTTTCATGCGT-AATACCT-AGCGGTGTCATTGAGTTT  1146

seq1  GTGTGTAGAATGCACAGGA  1157
      | ||   ||||||| ||||
seq2  GGGTTGTGAATGCA-AGGA  1164

seq1: chr12_113467375_113468346
seq2: B6Ng01-254I20.g_69_1051 (reverse)

seq1  TAGGGCTGAACTGG-AAGAC-AAATCCTGTTTATTACTGAAGACAAAGCT  48
      ||||||||||| || ||||| |||||||||||||||||||||||||||||
seq2  TAGGGCTGAACAGGAAAGACAAAATCCTGTTTATTACTGAAGACAAAGCT  50

seq1  GGTGCG-CACAGCACGTGTCAGGGATAGC-GCCTCTA-GGCAGTGGACCT  95
       ||||| |||||||||||||||||||||| ||||||| ||||||||||||
seq2  -GTGCGCCACAGCACGTGTCAGGGATAGCGGCCTCTAGGGCAGTGGACCT  99

seq1  T-GGGGTGGAAGAGCAATC-AAGGCTTTTTAAGAGG-CCCCCATTTACGT  142
      | ||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  TGGGGGTGGAAGAGCAATCAAAGGCTTTTTAAGAGGCCCCCCATTTACGT  149

seq1  GGGAGACAGAGATTCAGTTTGGGGGG-AGGGGTGGGCACGTGTCTGTGGC  191
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGGAGACAGAGATTCAGTTTGGGGGGAAGGGGTGGGCACGTGTCTGTGGC  199

seq1  TGCCTGAGGAAAGGTGATCAATGCC-AGGCATCGATTTGTATCCTTCCAG  240
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCCTGAGGAAAGGTGATCAATGCCAAGGCATCGATTTGTATCCTTCCAG  249

seq1  GGCAGCGATCAGG-AACACGATGGGATGCGGCGTGGGGAGGGGCT-GGCA  288
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  GGCAGCGATCAGGAAACACGATGGGATGCGGCGTGGGGAGGGGCTGGGCA  299

seq1  GCAGCTTAGGAAGTCTTTCATGTTTTGGGTCTGAAGGCTGTAGGCTTTGT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTAGGAAGTCTTTCATGTTTTGGGTCTGAAGGCTGTAGGCTTTGT  349

seq1  CAGATGGGTGCTAGTGAGTATTGATCTGTATTAGAAATGATAATGAATTG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGGTGCTAGTGAGTATTGATCTGTATTAGAAATGATAATGAATTG  399

seq1  ATCAGACGGGCTGGGAGGCTTTAACCACTTCAGTGCTTGAAGCCATTCAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACGGGCTGGGAGGCTTTAACCACTTCAGTGCTTGAAGCCATTCAA  449

seq1  GATGGGGTGTGAACGGAGGACTGGTCTCCAGCTCTTACTTCCTCCATACC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGTGTGAACGGAGGACTGGTCTCCAGCTCTTACTTCCTCCATACC  499

seq1  AAGTCTGCAGCTTCCAGACATGTGTCTCTCTGTGTGTCTCAGCGTTTGTG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGCAGCTTCCAGACATGTGTCTCTCTGTGTGTCTCAGCGTTTGTG  549

seq1  TCTGTGTCCATGTCTCTGTGAATGTGTGTGTGTGTCCCATGTCTGTGTCC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCCATGTCTCTGTGAATGTGTGTGTGTGTCCCATGTCTGTGTCC  599

seq1  ATGTGTGTGTCTCTGTATGTATGTCCATGTCTCTGTGTGTGCCTGTGTCC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTCTCTGTATGTATGTCCATGTCTCTGTGTGTGCCTGTGTCC  649

seq1  ATGCCTCTGTCTCTCTCTGTGTCTCTGTCTGTCTGTCTGTCTGTGGGGGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTGTCTCTCTCTGTGTCTCTGTCTGTCTGTCTGTCTGTGGGGGG  699

seq1  TGGGGGAAGTGATGGTGGGGGTTGGGGACTATACAAAGCAGAAAGCTTGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAAGTGATGGTGGGGGTTGGGGACTATACAAAGCAGAAAGCTTGG  749

seq1  ACAGGGACTTTGTGGCCAAGGTCACTAGGTCAGAACCAACAGGCTTGCCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACTTTGTGGCCAAGGTCACTAGGTCAGAACCAACAGGCTTGCCC  799

seq1  AGCATTTGGGAGCTCTGGCCTCCTGTATGGAAGGTGAGATGCTCTACAAC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGGGAGCTCTGGCCTCCTGTATGGAAGGTGAGATGCTCTACAAC  849

seq1  ACAGAAGACAGGAAGGCCTCAAGTAGTGGGGGGAGGGAATGACTGTCTCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGACAGGAAGGCCTCAAGTAGTGGGGGGAGGGAATGACTGTCTCT  899

seq1  CTAGAACTCTGGGCCTTGATAGTGTCCTGAGACCTGCTATTTGCTGAAGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTCTGGGCCTTGATAGTGTCCTGAGACCTGCTATTTGCTGAAGG  949

seq1  AGCTCTGTAGAGTTACCAAGTCCTTCAGGAATTC  972
      ||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTAGAGTTACCAAGTCCTTCAGGAATTC  983