BAC Information

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BAC

Clone NameB6Ng01-255N05
Chromosome12 (Build37)
Map Location 103,837,697 - 103,992,195
singlet/doubletdoublet
Overlap geneItpk1, Moap1, D230037D09Rik
Upstream gene4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga
Downstream gene5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255N05.bB6Ng01-255N05.g
ACCGA061938GA061939
length1,1061,104
definitionB6Ng01-255N05.b B6Ng01-255N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,837,697 - 103,838,804)(103,991,087 - 103,992,195)
sequence
gaattctccagcacctccatcttccttaaccaaaacttctttcctggcta
gtctgtcagtattcatatttaacacctttcaactccattttctgttcctg
agtctcactgtaattctgtctcccttctcctgtagagccacagaacacag
aggggacacaaccaaactttggttcccgctggacctaggtttaagtggga
gctgctgaggccagtaaccctcaggagggcctagaggcctgaaaaggttg
ggcctgaggggtggcagtggccagcctggggctatgctcccaggtgatct
gcccgcagtgtgctctggcctcagggccaaagtgctgctcttttaaagta
atctatggccgtacttgcaaagagcaatcaggattatgttctaataagca
tggacactgaagaccttctctggtcacggtcacctcctatacataaaagg
cacccactcctgggaacactgccagctggcagggccccataatggcaggg
acctgggaatcattagccatgagcaccagagcctcccaccacagcgctat
ccctaaaagccacagaggtaggcgggcatgcaggggccagggtaccctgg
gggttaggagcaactcagaccaggcaggttctatcccagacctgcctctg
gtcatcttggaactctgtcactcggctcgatgtactcgggtgtcttcatt
tctaacatgggcaacccttcctcacagagtcatcttgggaaaagagccac
cacagtgtcaggcatacgagtcgactgcctggagcacggctcaggtggtg
aggctgagtgggtggcgctagctctcctaggatggatagctgcaccctga
cctacaagccctgtctcatctttagagagccatttgtccagagctctaag
caacgttcctttctctcctcctggtgtcaagattactcaatttcaaccct
gcttccaaaccgcctccaagatgaaccatgattaaatttccatttaaaca
caggcagggaagattgcttgtactgtgcacactcctccctggggaggtct
gtgtcttggacagcatctggtcacctccccaagatccgcttgggagttac
aggaaa
gaattcaaagttggaggccagcttgtgtgctgcatgtcaagactttgcct
caaaacaaaaagccaagatagcagagcgctgccatttcatcacctgctgg
aacttacagaagacctgtgctctagttggggaactcatttcttttgtttg
attggaacaagttcatcacagagcaaacttccttgtttctaacaaagaaa
agtacaacaaaagtttgggagtgaactcttttgttttctcatcctaaaat
aaaatggaaccattcatagtggatgaaatctaaattggcaaatgaatttt
tatgtttgtttttctcctttaaaatgatcgttgagggctggtgagatggc
tcagtgggtaagagcacccgactgctcttccaaaggtccaaagttcaaat
cccagcaaccacatggtggctcacaaccatccgcaacaagatctgatgcc
ctcttctggagtgtctacagactacagtgtatttacatataataataaaa
taaatctttaaaaaaaaaaaaaaaaatgatcgttgaatcaaatggtgtgt
gtctacatctttcagtgtttataaaagctgcttatcatagttcataggca
attaatatttaaaagaatcgataagagaaatatgatttgtgtgtgtgtat
atacgtctgtacaagtatagatgtgaggttcaaatcaataaaatacattg
attgtaacttacatattttctgtagcctcttttttttttaattttattca
aaaggggactgttgaatagttcctaaaatatattgtatgtgttccttttc
tgctgtttatcggtggaactagagtggggttttttgatttacagtgcatc
tttcctgatcctgacacttgaaatgcaaaatatacctaatgagattagaa
taattcttttaattatatctgttttgttttgaggctgggtcttgcctatg
tatggtgcctagactggcctgaaatcattacatagcctgcctggcttgaa
cttttataacttatttcttggagtataggatcacagtatgcacacaatgc
tgggctttttgttgagaacagccttggctgtatgctgagttgaatctgga
actc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_103837697_103838804
seq2: B6Ng01-255N05.b_48_1153

seq1  GAATTCTCCAGCACCTCCATCTTCCTTAACCAAAACTTCTTTCCTGGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGCACCTCCATCTTCCTTAACCAAAACTTCTTTCCTGGCTA  50

seq1  GTCTGTCAGTATTCATATTTAACACCTTTCAACTCCATTTTCTGTTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCAGTATTCATATTTAACACCTTTCAACTCCATTTTCTGTTCCTG  100

seq1  AGTCTCACTGTAATTCTGTCTCCCTTCTCCTGTAGAGCCACAGAACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACTGTAATTCTGTCTCCCTTCTCCTGTAGAGCCACAGAACACAG  150

seq1  AGGGGACACAACCAAACTTTGGTTCCCGCTGGACCTAGGTTTAAGTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACACAACCAAACTTTGGTTCCCGCTGGACCTAGGTTTAAGTGGGA  200

seq1  GCTGCTGAGGCCAGTAACCCTCAGGAGGGCCTAGAGGCCTGAAAAGGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAGGCCAGTAACCCTCAGGAGGGCCTAGAGGCCTGAAAAGGTTG  250

seq1  GGCCTGAGGGGTGGCAGTGGCCAGCCTGGGGCTATGCTCCCAGGTGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAGGGGTGGCAGTGGCCAGCCTGGGGCTATGCTCCCAGGTGATCT  300

seq1  GCCCGCAGTGTGCTCTGGCCTCAGGGCCAAAGTGCTGCTCTTTTAAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCAGTGTGCTCTGGCCTCAGGGCCAAAGTGCTGCTCTTTTAAAGTA  350

seq1  ATCTATGGCCGTACTTGCAAAGAGCAATCAGGATTATGTTCTAATAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGGCCGTACTTGCAAAGAGCAATCAGGATTATGTTCTAATAAGCA  400

seq1  TGGACACTGAAGACCTTCTCTGGTCACGGTCACCTCCTATACATAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACTGAAGACCTTCTCTGGTCACGGTCACCTCCTATACATAAAAGG  450

seq1  CACCCACTCCTGGGAACACTGCCAGCTGGCAGGGCCCCATAATGGCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTCCTGGGAACACTGCCAGCTGGCAGGGCCCCATAATGGCAGGG  500

seq1  ACCTGGGAATCATTAGCCATGAGCACCAGAGCCTCCCACCACAGCGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAATCATTAGCCATGAGCACCAGAGCCTCCCACCACAGCGCTAT  550

seq1  CCCTAAAAGCCACAGAGGTAGGCGGGCATGCAGGGGCCAGGGTACCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAAGCCACAGAGGTAGGCGGGCATGCAGGGGCCAGGGTACCCTGG  600

seq1  GGGTTAGGAGCAACTCAGACCAGGCAGGTTCTATCCCAGACCTGCCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGGAGCAACTCAGACCAGGCAGGTTCTATCCCAGACCTGCCTCTG  650

seq1  GTCATCTTGGAACTCTGTCACTCGGCTCGATGTACTCGGGTGTCTTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTGGAACTCTGTCACTCGGCTCGATGTACTCGGGTGTCTTCATT  700

seq1  TCTAACATGGGCAACCCTTCCTCACAGAGTCATCTTGGGAAAAGAGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACATGGGCAACCCTTCCTCACAGAGTCATCTTGGGAAAAGAGCCAC  750

seq1  CACAGTGTCAGGCATACGAGTCGACTGCCTGGAGCACGGCTCAGGTGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGTCAGGCATACGAGTCGACTGCCTGGAGCACGGCTCAGGTGGTG  800

seq1  AGGCTGAGTGGGTGGCGCTAGCTCTCCTAGGATGGATAGCTGCACCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGTGGGTGGCGCTAGCTCTCCTAGGATGGATAGCTGCACCCTGA  850

seq1  CCTACAAGCCCTGTCTCATCTTTAGAGAGCCATTTGTCCAGAGCTCTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAAGCCCTGTCTCATCTTTAGAGAGCCATTTGTCCAGAGCTCTAAG  900

seq1  CAACGTTCCTTTCTCTCCTCCTGGTGTCAAGATTACTCAATTTCAACCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTTCCTTTCTCTCCTCCTGGTGTCAAGATTACTCAATTTCAACCCT  950

seq1  GCTTCCAAACCGCCTCCAAGATGAACCATGATTAATTTCCCATTAAAACC  1000
      ||||||||||||||||||||||||||||||||||| || ||||| ||| |
seq2  GCTTCCAAACCGCCTCCAAGATGAACCATGATTAAATTTCCATTTAAA-C  999

seq1  ACAGGCAGGGAAGATTGCTTGTACTGTGCACACCCCTCCCTGGGGAGGTC  1050
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACAGGCAGGGAAGATTGCTTGTACTGTGCACACTCCTCCCTGGGGAGGTC  1049

seq1  TGTGTCTGGGACAGGCCATCTGGTCACCTCCCC-AGAT-CGCGTGGGAGG  1098
      ||||||| ||||||  ||||||||||||||||| |||| ||| ||||| |
seq2  TGTGTCTTGGACAG--CATCTGGTCACCTCCCCAAGATCCGCTTGGGA-G  1096

seq1  TTACAGGAAA  1108
      ||||||||||
seq2  TTACAGGAAA  1106

seq1: chr12_103991087_103992195
seq2: B6Ng01-255N05.g_68_1171 (reverse)

seq1  GAGTTCCAGA-TCAACTTCAGCATACAGCAAAGCCTTGTCTCAAAACAAA  49
      |||||||||| ||||| |||||||||||| ||| ||  ||||  ||||||
seq2  GAGTTCCAGATTCAAC-TCAGCATACAGCCAAGGCTGTTCTC--AACAAA  47

seq1  AAGCCAGGCATGGTTGTGCATACCTGTGATCCCTAATACTC--AGAAATA  97
      |||||  |||| | |||||||| |||||||||   ||||||  |||||||
seq2  AAGCCCAGCATTG-TGTGCATA-CTGTGATCC--TATACTCCAAGAAATA  93

seq1  AGTTATTAAAAGTTCAAAGCCAGGCAGGCTATGTAATGATTTCCAGGCCA  147
      ||||| ||||||||| |||||||||||||||||||||||||| |||||||
seq2  AGTTA-TAAAAGTTC-AAGCCAGGCAGGCTATGTAATGATTT-CAGGCCA  140

seq1  GTCTAGGCCACATACATA-GCAAGACCCAGCCTCAAAACAAAACAGATAT  196
      ||||||||  |||||||| |||||||||||||||||||||||||||||||
seq2  GTCTAGGCACCATACATAGGCAAGACCCAGCCTCAAAACAAAACAGATAT  190

seq1  AATTAAAAGAATTATTCTAATCTCATTAGGTATATTTTGCATTTCAAGTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAGAATTATTCTAATCTCATTAGGTATATTTTGCATTTCAAGTG  240

seq1  TCAGGATCAGGAAAGATGCACTGTAAATCAAAAAACCCCACTCTAGTTCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATCAGGAAAGATGCACTGTAAATCAAAAAACCCCACTCTAGTTCC  290

seq1  ACCGATAAACAGCAGAAAAGGAACACATACAATATATTTTAGGAACTATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATAAACAGCAGAAAAGGAACACATACAATATATTTTAGGAACTATT  340

seq1  CAACAGTCCCCTTTTGAATAAAATT-AAAAAAAAAGAGGCTACAGAAAAT  395
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAACAGTCCCCTTTTGAATAAAATTAAAAAAAAAAGAGGCTACAGAAAAT  390

seq1  ATGTAAGTTACAATCAATGTATTTTATTGATTTGAACCTCACATCTATAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGTTACAATCAATGTATTTTATTGATTTGAACCTCACATCTATAC  440

seq1  TTGTACAGACGTATATACACACACACAAATCATATTTCTCTTATCGATTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGACGTATATACACACACACAAATCATATTTCTCTTATCGATTC  490

seq1  TTTTAAATATTAATTGCCTATGAACTATGATAAGCAGCTTTTATAAACAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATATTAATTGCCTATGAACTATGATAAGCAGCTTTTATAAACAC  540

seq1  TGAAAGATGTAGACACACACCATTTGATTCAACGATCATTTTTTTTTTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATGTAGACACACACCATTTGATTCAACGATCATTTTTTTTTTTT  590

seq1  TTTTTAAAGATTTATTTTATTATTATATGTAAATACACTGTAGTCTGTAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGATTTATTTTATTATTATATGTAAATACACTGTAGTCTGTAG  640

seq1  ACACTCCAGAAGAGGGCATCAGATCTTGTTGCGGATGGTTGTGAGCCACC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCAGAAGAGGGCATCAGATCTTGTTGCGGATGGTTGTGAGCCACC  690

seq1  ATGTGGTTGCTGGGATTTGAACTTTGGACCTTTGGAAGAGCAGTCGGGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTGCTGGGATTTGAACTTTGGACCTTTGGAAGAGCAGTCGGGTG  740

seq1  CTCTTACCCACTGAGCCATCTCACCAGCCCTCAACGATCATTTTAAAGGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCCACTGAGCCATCTCACCAGCCCTCAACGATCATTTTAAAGGA  790

seq1  GAAAAACAAACATAAAAATTCATTTGCCAATTTAGATTTCATCCACTATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAACATAAAAATTCATTTGCCAATTTAGATTTCATCCACTATG  840

seq1  AATGGTTCCATTTTATTTTAGGATGAGAAAACAAAAGAGTTCACTCCCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTCCATTTTATTTTAGGATGAGAAAACAAAAGAGTTCACTCCCAA  890

seq1  ACTTTTGTTGTACTTTTCTTTGTTAGAAACAAGGAAGTTTGCTCTGTGAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTTGTACTTTTCTTTGTTAGAAACAAGGAAGTTTGCTCTGTGAT  940

seq1  GAACTTGTTCCAATCAAACAAAAGAAATGAGTTCCCCAACTAGAGCACAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTTCCAATCAAACAAAAGAAATGAGTTCCCCAACTAGAGCACAG  990

seq1  GTCTTCTGTAAGTTCCAGCAGGTGATGAAATGGCAGCGCTCTGCTATCTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGTAAGTTCCAGCAGGTGATGAAATGGCAGCGCTCTGCTATCTT  1040

seq1  GGCTTTTTGTTTTGAGGCAAAGTCTTGACATGCAGCACACAAGCTGGCCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTGTTTTGAGGCAAAGTCTTGACATGCAGCACACAAGCTGGCCT  1090

seq1  CCAACTTTGAATTC  1109
      ||||||||||||||
seq2  CCAACTTTGAATTC  1104