BAC Information

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BAC

Clone NameB6Ng01-256F09
Chromosome12 (Build37)
Map Location 103,616,357 - 103,797,099
singlet/doubletdoublet
Overlap geneRin3, Lgmn, Golga5, Chga
Upstream gene4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4
Downstream geneItpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256F09.bB6Ng01-256F09.g
ACCGA062320GA062321
length1,1111,098
definitionB6Ng01-256F09.b B6Ng01-256F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,795,996 - 103,797,099)(103,616,357 - 103,617,434)
sequence
gaattcatcccagatccagagaacggctactggtgtcagcgagactccaa
acactgagagtacagaacacagaaccctagtacgcagggcacccagtctg
caccttgctgttccagctccttcattctgcccaggcttctagttaactgc
catatgtccctctgagtgtctacaaacctcagggtcccaggagctgtcac
ccattcctgtgtcttccccagattctagcacataccagggcactggggca
atgagtactggatgtgatgattaagagctaccctcccacaccctggcctc
ccaattcctcctccagcctctgactcctacctccttggagggtctccaga
cactcagggctgacaggcatggggctgggtttggacagcgagtcggagat
gacttccaggacgcacttcatcacctgggagacagcaaggtgggctgtgg
ccggtgtgaacatggagctcagcccctgaggtgccagggcaactttccca
gaagggcagaagagcatttgtgttgtcttcaaggggccatggggcccagc
tctgcttctttaataagaccatagagccacagaaacaggacactacacac
acaccacacacacacacacacacacacacacacacacacacacactgctt
actgtgggccagtcaaatcacatgggcattccagcatgtgtcttgaggga
accactgctaaaggaggggtgagagcaggtgcctaacatgttctcactcg
taaggtagttctccaaggatggcgctgcctctgagacctaaaaggacctc
ttgcaaaggactggggtctagcagagtccatagggtcagttcctccagac
tgcccattgaagaacacgaacctacctggatttgaactttgccagaaaca
ggaccacctcccatttctaacagccacagtgtgtggctccacgttttcac
ggaagaatccccttggttgggatgtggaatactaactagtacagctggat
gtctggttccagaccaacacgacacacctctgaatatttttatccgacct
gtgaggtgagcagcaaatccacaaaaggcaccattgatatttcctggagg
tgtgtccactg
gaattccacatcttacagccattattttgtgtagcttcctttaatgtgct
gtgattcaagggtctttcttggactacactcattttttttaaatatctat
atcattttaattgcatgtgtgcctgtatctgtgtgctaagcatgtgactg
ttgagggcaggtcccctcagagtccagggacattgggcctcctggaacta
gagttacaggcagtcatgagctgcctgatgcgagtgctgagaagcaaagt
agggtcccctgcaagagcagtgtgcactcttaactgctgagccatctctc
cagccctaaagctgacacatgagagaatgcatgttttcttcctgcctcca
tctttgccacgtaggccacagtttctcaagtctgtcgcactttcctcata
gttgctgacttggctactttctcattgctttgatcaaatacgctgaccaa
tgcaacctgagagaaaatgaggtcgtttaggctaagagttacaggtttgg
cccatctcagccgggacatctaggcagcaggagcttaaggcggctggtca
cattgctttgcaaggtcaaaaaaatagcaataaatgctagctagtgttca
gtttactttctgccatttttacagcccagtctcactcaaattaagctgag
tctcctcaattaatgtaatcagttcctgtgattggcatgcccagaggtcc
atatcccaggtagctgtagattctattgagttgacagctaacagctatta
cagttacatgggagtgttgttgtttttttattatttacttttattttatg
tgcattggtgttttgcctgcatgtatgtctgtatgagagggttggatccc
gttgaatttacagacagttgtgacccgccgtgtgggtgctgggaattgaa
ccctggtcctttggaagagcagtcagtgctctaaactgctgaacaatcca
atctcttttagcccctggatgacacatttctttagctgcatctcagtttg
actcagaattccactttcagaactttgaacactagtggttttcaagaact
agacttccccatttcttctaaccctaaccccaactccattcatgttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_103795996_103797099
seq2: B6Ng01-256F09.b_48_1158 (reverse)

seq1  CAGTGGACACCAACTTCAGAAATTATCCATGGTGC--TTTGT-GATTTGC  47
      ||||||||| || || ||| || |||| |||||||  ||||| |||||||
seq2  CAGTGGACA-CACCTCCAGGAAATATCAATGGTGCCTTTTGTGGATTTGC  49

seq1  TGCTCACCTCACAGGGTCGGAT-AAAATATTCAGAGGTGTGTCGTGTTGG  96
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  TGCTCACCTCACA-GGTCGGATAAAAATATTCAGAGGTGTGTCGTGTTGG  98

seq1  TCTGG-ACCAGACATCCAGCTGTAACTAGTTAGTA-TCCACAT-CCAACC  143
      ||||| ||||||||||||||||| ||||||||||| ||||||| ||||||
seq2  TCTGGAACCAGACATCCAGCTGT-ACTAGTTAGTATTCCACATCCCAACC  147

seq1  -AGGGGATTCTTCCCGTGAAAACGTGGAGCCACACACTGTGGCTG-TAG-  190
       ||||||||||| |||||||||||||||||||||||||||||||| ||| 
seq2  AAGGGGATTCTT-CCGTGAAAACGTGGAGCCACACACTGTGGCTGTTAGA  196

seq1  AATGGGAGGTGGTCCTGTTTCTGGC-AAGTTCAAATCCAGGTAGGTTCGT  239
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATGGGAGGTGGTCCTGTTTCTGGCAAAGTTCAAATCCAGGTAGGTTCGT  246

seq1  GTTCTTCAATGGGCAGTCTGGAGGAACTGACCCTATGGACTCTGCTAGAC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCAATGGGCAGTCTGGAGGAACTGACCCTATGGACTCTGCTAGAC  296

seq1  CCCAGTCCTTTGCAAGAGGTCCTTTTAGGTCTCAGAGGCAGCGCCATCCT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCCTTTGCAAGAGGTCCTTTTAGGTCTCAGAGGCAGCGCCATCCT  346

seq1  TGGAGAACTACCTTACGAGTGAGAACATGTTAGGCACCTGCTCCCACCCC  389
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGAGAACTACCTTACGAGTGAGAACATGTTAGGCACCTGCTCTCACCCC  396

seq1  TCCTTTAGCAGTGGTTCCCTCAAGACACATGCTGGAATGCCCATGTGATT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGCAGTGGTTCCCTCAAGACACATGCTGGAATGCCCATGTGATT  446

seq1  TGACTGGCCCACAGTAAGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGCCCACAGTAAGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  496

seq1  GTGTGTGTGTGGTGTGTGTGTAGTGTCCTGTTTCTGTGGCTCTATGGTCT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGGTGTGTGTGTAGTGTCCTGTTTCTGTGGCTCTATGGTCT  546

seq1  TATTAAAGAAGCAGAGCTGGGCCCCATGGCCCCTTGAAGACAACACAAAT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGAAGCAGAGCTGGGCCCCATGGCCCCTTGAAGACAACACAAAT  596

seq1  GCTCTTCTGCCCTTCTGGGAAAGTTGCCCTGGCACCTCAGGGGCTGAGCT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTGCCCTTCTGGGAAAGTTGCCCTGGCACCTCAGGGGCTGAGCT  646

seq1  CCATGTTCACACCGGCCACAGCCCACCTTGCTGTCTCCCAGGTGATGAAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCACACCGGCCACAGCCCACCTTGCTGTCTCCCAGGTGATGAAG  696

seq1  TGCGTCCTGGAAGTCATCTCCGACTCGCTGTCCAAACCCAGCCCCATGCC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCCTGGAAGTCATCTCCGACTCGCTGTCCAAACCCAGCCCCATGCC  746

seq1  TGTCAGCCCTGAGTGTCTGGAGACCCTCCAAGGAGGTAGGAGTCAGAGGC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCCTGAGTGTCTGGAGACCCTCCAAGGAGGTAGGAGTCAGAGGC  796

seq1  TGGAGGAGGAATTGGGAGGCCAGGGTGTGGGAGGGTAGCTCTTAATCATC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGGAATTGGGAGGCCAGGGTGTGGGAGGGTAGCTCTTAATCATC  846

seq1  ACATCCAGTACTCATTGCCCCAGTGCCCTGGTATGTGCTAGAATCTGGGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAGTACTCATTGCCCCAGTGCCCTGGTATGTGCTAGAATCTGGGG  896

seq1  AAGACACAGGAATGGGTGACAGCTCCTGGGACCCTGAGGTTTGTAGACAC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACAGGAATGGGTGACAGCTCCTGGGACCCTGAGGTTTGTAGACAC  946

seq1  TCAGAGGGACATATGGCAGTTAACTAGAAGCCTGGGCAGAATGAAGGAGC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGGACATATGGCAGTTAACTAGAAGCCTGGGCAGAATGAAGGAGC  996

seq1  TGGAACAGCAAGGTGCAGACTGGGTGCCCTGCGTACTAGGGTTCTGTGTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAGCAAGGTGCAGACTGGGTGCCCTGCGTACTAGGGTTCTGTGTT  1046

seq1  CTGTACTCTCAGTGTTTGGAGTCTCGCTGACACCAGTAGCCGTTCTCTGG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTCTCAGTGTTTGGAGTCTCGCTGACACCAGTAGCCGTTCTCTGG  1096

seq1  ATCTGGGATGAATTC  1104
      |||||||||||||||
seq2  ATCTGGGATGAATTC  1111

seq1: chr12_103616357_103617434
seq2: B6Ng01-256F09.g_64_1161

seq1  GAATTCCACATCTTACAGCCATTATTTTGTGTAGCTTCCTTTAATGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATCTTACAGCCATTATTTTGTGTAGCTTCCTTTAATGTGCT  50

seq1  GTGATTCAAGGGTCTTTCTTGGACTACACTCATTTTTTTTAAATATCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCAAGGGTCTTTCTTGGACTACACTCATTTTTTTTAAATATCTAT  100

seq1  ATCATTTTAATTGCATGTGTGCCTGTATCTGTGTGCTAAGCATGTGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTAATTGCATGTGTGCCTGTATCTGTGTGCTAAGCATGTGACTG  150

seq1  TTGAGGGCAGGTCCCCTCAGAGTCCAGGGACATTGGGCCTCCTGGAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGCAGGTCCCCTCAGAGTCCAGGGACATTGGGCCTCCTGGAACTA  200

seq1  GAGTTACAGGCAGTCATGAGCTGCCTGATGCGAGTGCTGAGAAGCAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACAGGCAGTCATGAGCTGCCTGATGCGAGTGCTGAGAAGCAAAGT  250

seq1  AGGGTCCCCTGCAAGAGCAGTGTGCACTCTTAACTGCTGAGCCATCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCCCTGCAAGAGCAGTGTGCACTCTTAACTGCTGAGCCATCTCTC  300

seq1  CAGCCCTAAAGCTGACACATGAGAGAATGCATGTTTTCTTCCTGCCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTAAAGCTGACACATGAGAGAATGCATGTTTTCTTCCTGCCTCCA  350

seq1  TCTTTGCCACGTAGGCCACAGTTTCTCAAGTCTGTCGCACTTTCCTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCACGTAGGCCACAGTTTCTCAAGTCTGTCGCACTTTCCTCATA  400

seq1  GTTGCTGACTTGGCTACTTTCTCATTGCTTTGATCAAATACGCTGACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGACTTGGCTACTTTCTCATTGCTTTGATCAAATACGCTGACCAA  450

seq1  TGCAACCTGAGAGAAAATGAGGTCGTTTAGGCTAAGAGTTACAGGTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCTGAGAGAAAATGAGGTCGTTTAGGCTAAGAGTTACAGGTTTGG  500

seq1  CCCATCTCAGCCGGGACATCTAGGCAGCAGGAGCTTAAGGCGGCTGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCAGCCGGGACATCTAGGCAGCAGGAGCTTAAGGCGGCTGGTCA  550

seq1  CATTGCTTTGCAAGGTCAAAAAAATAGCAATAAATGCTAGCTAGTGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTTGCAAGGTCAAAAAAATAGCAATAAATGCTAGCTAGTGTTCA  600

seq1  GTTTACTTTCTGCCATTTTTACAGCCCAGTCTCACTCAAATTAAGCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTTCTGCCATTTTTACAGCCCAGTCTCACTCAAATTAAGCTGAG  650

seq1  TCTCCTCAATTAATGTAATCAGTTCCTGTGATTGGCATGCCCAGAGGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCAATTAATGTAATCAGTTCCTGTGATTGGCATGCCCAGAGGTCC  700

seq1  ATATCCCAGGTAGCTGTAGATTCTATTGAGTTGACAGCTAACAGCTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCAGGTAGCTGTAGATTCTATTGAGTTGACAGCTAACAGCTATTA  750

seq1  CAGTTACATGGGAGTGTTGTTGTTTTTTTATTATTTACTTTTATTTTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACATGGGAGTGTTGTTGTTTTTTTATTATTTACTTTTATTTTATG  800

seq1  TGCATTGGTGTTTTGCCTGCATGTATGTCTGTATGAGAGGGTTGGATCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGGTGTTTTGCCTGCATGTATGTCTGTATGAGAGGGTTGGATCCC  850

seq1  G-TGAA-TTACAGACAGTTGTGACCCGCCGTGTGGGTGCTGGGAATTGAA  898
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATTTACAGACAGTTGTGACCCGCCGTGTGGGTGCTGGGAATTGAA  900

seq1  CCCTGGTCCTTTGGAAGAGCAGTCAGTGCTCTAAACTGCTGAAC-ATCC-  946
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  CCCTGGTCCTTTGGAAGAGCAGTCAGTGCTCTAAACTGCTGAACAATCCA  950

seq1  ATCTC-TTTAGCCCCTGGATGACACATT--CTTAGCTGCATCTCAG-TTG  992
      ||||| ||||||||||||||||||||||   ||||||||||||||| |||
seq2  ATCTCTTTTAGCCCCTGGATGACACATTTCTTTAGCTGCATCTCAGTTTG  1000

seq1  ACTCAGA--TTCAC-TTCAG-ACTT--GACACTAGTGG-TTTCAAG-ACT  1034
      |||||||  | ||| ||||| ||||   |||||||||| ||||||| |||
seq2  ACTCAGAATTCCACTTTCAGAACTTTGAACACTAGTGGTTTTCAAGAACT  1050

seq1  AGACTTCCCCATT--CTCTAA-CCTA--CCCCACTCCATTCCATGTTCC  1078
      |||||||||||||   ||||| ||||  ||| |||||||| ||||||||
seq2  AGACTTCCCCATTTCTTCTAACCCTAACCCCAACTCCATT-CATGTTCC  1098