BAC Information

Click to search

BAC

Clone NameB6Ng01-256G01
Chromosome13 (Build37)12 (Build37)
Map Location 82,841,287 - 82,842,46769,055,028 - 69,055,266
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePolr3g, 2900024O10Rik, Cetn3, LOC238756
Downstream geneLOC667018, Mef2c, LOC100043111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256G01.bB6Ng01-256G01.g
ACCGA062352GA062353
length1,196463
definitionB6Ng01-256G01.b B6Ng01-256G01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,841,287 - 82,842,467)(69,055,028 - 69,055,266)
sequence
gaattctagaggggaaaaatatcccattgcagcttagcttgaattggctt
acataaagattttatgatgcaaattggagatattggactcaggaacaacc
tacagtatctgttctgtcctcctgtctaacagtcataggatgcttcctgg
agtttgacgctccatcctcattaataagctctgtgttgtacatctttgtc
tgatatgaagctgccataccttgtcaccaattatagactctgaaaagacc
catctcattataatacttaaattgcttattcctgaaggcaatgcttggtg
tgtcttttctgcctcttgccaacaggaaaatcacccttgaagtgaataga
tgtcagtcaaaagttacaaaagaaaagcaagagaaattaataaaaagtcc
tagcaggaatatttatcagcttattgcccagaaaagaatacagatcagac
aaataaactgcaaggattaaaaagacacctttggaaattttaatcacatg
aaacgtatctgtttatgatattgtgaccaaataaatattctaaacatggg
tacttgtgagaaccaaagtgagttgactattattctgacatcattgcact
gaaagaagaatgcagtattcaggaactcatgtgtctctatttccataaca
cttctgttgtaagaagttgaacatcatggttactataactctgtattata
agcttagctcatgtatgtttttcaataaattatgattgatctgtaaatac
agatatatagtgaataacttgatgaacaaagggcatgaaagcctcaaggg
aaatttaggtaggtcaaagagagtcttaaaggcaaatatattaagtttta
aaatatgtgaaacatttgaaatttacttgaagatcagtcatttaagttgc
aagggaggtgcctacgtactatgtattctgttttgtttcaaaaggaaaaa
gtctagatacattcaagtaacaataaggtcagtataaaccagcataaggg
aaattattattatttttcccttactgcctcttttgttttcttcaatggta
atgtttatatcaagctaatcaataagaacattatttaataatgaagaact
cttccaaaatccactgtagttcatttttatgtccctacagcgctccgtat
tctacacattgaattcagtcaaggccactcgaagaagggtgaaaag

gaattcatgatctttccaagacttttaacatgacggactgtttaatcgaa
tgatttttcagcatctgagatgataatgtgtttttcctcctttgagtttg
gttatatagtggattacgttgatgcattcccatatattgtttcatccctg
cattcctgggatgaagcctacttaatcaccatgaatgagagttttgagtg
ttttcttgaattctgtttgcaagaattttattgagtatttttgcagtgat
attcataagagaaattggtctgatgttctgtttcattcttttttttctgt
gtggtttagatattagtttaactgtgggctcatagagtgaattaggtagt
gttccctcctctgtttctactttgtggagtaattttaagagtattggtat
tagatcttctttgaaagtctgatagaattctgtactaaacccatttggtc
ctgggtttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82841287_82842467
seq2: B6Ng01-256G01.b_46_1241 (reverse)

seq1  CTTTTCA-CCTTCTTC--ATGGCCTTGACTGATTCAAATGTGTAG-ATAG  46
      ||||||| ||||||||   ||||||||||||| |  ||||||||| ||| 
seq2  CTTTTCACCCTTCTTCGAGTGGCCTTGACTGAATTCAATGTGTAGAATAC  50

seq1  GGA--GCTGTA-GGACATATATTTG-ACTACAGT-GATTTT-GAAGAG-T  89
      |||  |||||| ||||||| |  || |||||||| |||||| |||||| |
seq2  GGAGCGCTGTAGGGACATAAAAATGAACTACAGTGGATTTTGGAAGAGTT  100

seq1  CTTCATTATTAAAATAATGT--CTATTGATTTAGCCTGATAATAAAAACA  137
      |||||||||| |||||||||   |||||| ||||| |||| ||||| |  
seq2  CTTCATTATT-AAATAATGTTCTTATTGA-TTAGCTTGAT-ATAAACA-T  146

seq1  TAACATTTGAGAAA--CAAAGAGGCAGTAAGG--AAAAT-ATAATAATTT  182
      || ||||  |||||   |||||||||||||||  ||||| ||||||||||
seq2  TACCATTGAAGAAAACAAAAGAGGCAGTAAGGGAAAAATAATAATAATTT  196

seq1  CCCTTATGCTGGTTTATACTGA-CTTATTGTTACTTGAATGTATCTAGAC  231
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCTTATGCTGGTTTATACTGACCTTATTGTTACTTGAATGTATCTAGAC  246

seq1  TTTTTCCTTTTGAAACAAAACAGAATACATAGTACGTAGGCACCCTCCCT  281
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTTCCTTTTGAAACAAAACAGAATACATAGTACGTAGGCA-CCTCCCT  295

seq1  TGCAACTTAAATGACTGATCTTCAAGTAAATTTCAAATGTTTCACATATT  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTTAAATGACTGATCTTCAAGTAAATTTCAAATGTTTCACATATT  345

seq1  TTAAAACTTAATATATTTGCCTTTAAGACTCTCTTTGACCTACCTAAATT  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTTAATATATTTGCCTTTAAGACTCTCTTTGACCTACCTAAATT  395

seq1  TCCCTTGAGGCTTTCATGCCC-TTGTTCATCAAGTTATTCACTATATATC  430
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCCCTTGAGGCTTTCATGCCCTTTGTTCATCAAGTTATTCACTATATATC  445

seq1  TGTATTTACAGATCAATCATAATTTATTGAAAAACATACATGAGCTAAGC  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTACAGATCAATCATAATTTATTGAAAAACATACATGAGCTAAGC  495

seq1  TTATAATACAGAGTTATAGTAACCATGATGTTCAACTTCTTACAACAGAA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATACAGAGTTATAGTAACCATGATGTTCAACTTCTTACAACAGAA  545

seq1  GTGTTATGGAAATAGAGACACATGAGTTCCTGAATACTGCATTCTTCTTT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATGGAAATAGAGACACATGAGTTCCTGAATACTGCATTCTTCTTT  595

seq1  CAGTGCAATGATGTCAGAATAATAGTCAACTCACTTTGGTTCTCACAAGT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAATGATGTCAGAATAATAGTCAACTCACTTTGGTTCTCACAAGT  645

seq1  ACCCATGTTTAGAATATTTATTTGGTCACAATATCATAAACAGATACGTT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGTTTAGAATATTTATTTGGTCACAATATCATAAACAGATACGTT  695

seq1  TCATGTGATTAAAATTTCCAAAGGTGTCTTTTTAATCCTTGCAGTTTATT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGATTAAAATTTCCAAAGGTGTCTTTTTAATCCTTGCAGTTTATT  745

seq1  TGTCTGATCTGTATTCTTTTCTGGGCAATAAGCTGATAAATATTCCTGCT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGATCTGTATTCTTTTCTGGGCAATAAGCTGATAAATATTCCTGCT  795

seq1  AGGACTTTTTATTAATTTCTCTTGCTTTTCTTTTGTAACTTTTGACTGAC  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTTTATTAATTTCTCTTGCTTTTCTTTTGTAACTTTTGACTGAC  845

seq1  ATCTATTCACTTCAAGGGTGATTTTCCTGTTGGCAAGAGGCAGAAAAGAC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTCACTTCAAGGGTGATTTTCCTGTTGGCAAGAGGCAGAAAAGAC  895

seq1  ACACCAAGCATTGCCTTCAGGAATAAGCAATTTAAGTATTATAATGAGAT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAGCATTGCCTTCAGGAATAAGCAATTTAAGTATTATAATGAGAT  945

seq1  GGGTCTTTTCAGAGTCTATAATTGGTGACAAGGTATGGCAGCTTCATATC  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTTTCAGAGTCTATAATTGGTGACAAGGTATGGCAGCTTCATATC  995

seq1  AGACAAAGATGTACAACACAGAGCTTATTAATGAGGATGGAGCGTCAAAC  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGATGTACAACACAGAGCTTATTAATGAGGATGGAGCGTCAAAC  1045

seq1  TCCAGGAAGCATCCTATGACTGTTAGACAGGAGGACAGAACAGATACTGT  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAAGCATCCTATGACTGTTAGACAGGAGGACAGAACAGATACTGT  1095

seq1  AGGTTGTTCCTGAGTCCAATATCTCCAATTTGCATCATAAAATCTTTATG  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTTCCTGAGTCCAATATCTCCAATTTGCATCATAAAATCTTTATG  1145

seq1  TAAGCCAATTCAAGCTAAGCTGCAATGGGATATTTTTCCCCTCTAGAATT  1180
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAATTCAAGCTAAGCTGCAATGGGATATTTTTCCCCTCTAGAATT  1195

seq1  C  1181
      |
seq2  C  1196


seq1: chr12_69055028_69055266
seq2: B6Ng01-256G01.g_285_526 (reverse)

seq1  AAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTT  50
      ||||||| |||||||||| ||||||||||| |||| ||||||||||| ||
seq2  AAAAAAAACCCAGGACCAAATGGGTTTAGTACAGAATTCTATCAGACTTT  50

seq1  CAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGA--  98
      ||||||||||||||| ||||| ||    ||| || | |||||| ||||  
seq2  CAAAGAAGATCTAATACCAATACTCTTAAAATTACTCCACAAAGTAGAAA  100

seq1  -AGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTG  147
       ||  || || || ||||| || ||| | |||||  ||||  |||  || 
seq2  CAGAGGAGGGAACACTACCTAATTCACTCTATGAGCCCACAGTTAAACTA  150

seq1  ATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAAT  197
      ||| |||||||||| | | |   || || || | ||||| ||||||||||
seq2  ATATCTAAACCACACAGAAAAAAAAGAATGAAACAGAACATCAGACCAAT  200

seq1  TTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCT  239
      ||||||||||||||||  ||||||||| ||||||||||||||
seq2  TTCTCTTATGAATATCACTGCAAAAATACTCAATAAAATTCT  242


| Home | SequenceCutter | Blast | Download |