BAC Information

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BAC

Clone NameB6Ng01-256G10
Chromosome12 (Build37)
Map Location 86,060,169 - 86,252,559
singlet/doubletdoublet
Overlap geneNpc2, Isca2, Ltbp2
Upstream genePsen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a
Downstream gene1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256G10.bB6Ng01-256G10.g
ACCGA062370GA062371
length1,0301,098
definitionB6Ng01-256G10.b B6Ng01-256G10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,251,524 - 86,252,559)(86,060,169 - 86,061,269)
sequence
gaattcttttcttttctcttcttttctcttcttttcttttcttttctttt
cttttcttttcttttcttttcttttcctttcctttctttctttctttctt
ttctctctctctctctctctttctttctttctttcttcctttctttcttt
ctttctttctttctttctttctttctttctttctttctagaagaaacttt
gaaaaagtaagggagaggtcacctcaaacaaaaatgtgcaaaaggagagg
ggcacttgggcttgtgggtgacagacgcctcctgacagtaagaccagtgt
cagaagccaagtttgctgttagccataaaacagtggtgatcatttccggt
ccctcttcagcctcacctggatatgctatagggtcctcctgccacagctg
aggagcacgaagggaaagagagccatgaacagaacagctgtattttcgta
catttgggacatgtctaaaaccttcagaccttaatatactgtgtgtccaa
aactcttttaagtccagcaaccagaggccgttttcctaagctttttgggc
ttctgtccagggcccctcaactgtacaagctgctcccaaagtcgtatctt
ttttcaaggttatatgttttacattatttgctaccattttgggggaaaat
gttcaaattctctgattctactttgatttctcctctgccatgtgtccctc
catgtcaggcgatgatgggtggctctgacatttgggtactggaggaatga
attcggcatgtttttaagtgggcctgctacaatgtatcatcagtttggtt
tccatctaacagtgggattaacagggatgaatagagaagcaagggttgga
tgtatgaagggagaatcagttctgacagagtctcccaaacatcagatgat
caagcatagtaagatttcagttggtctcaagcttctgtagtttgaaagtt
gtctttatggggtaaatcaaaacaattagttaagaaagaatatttggaac
agaaaatgaccattacaaatcaaagagttt
gaattcataggaaagttggaaaacacaagcaacaaatttggtctaaattt
agaacacttcattcaaaggtagtgtcttggtgagttagtaccattaagtt
gacaaggcctagagtcactggggagagggacactcaactgaagaactgcc
tccatcactctggcctgtgggcattgtcttgattaataattgatgtggga
ggacttggctcagtccagcccactggagagagagttcagcagttatgagc
acttgatgctcttctggagaccctggttcaggagttggtggtacacagcc
acctggaactccagctccaggggatctgactcctcctcctccccctcctc
ttccctctcctccttctcctctttatttatttatttatttatttttattt
ttatgcacactggtgttttgcctatatgtatatctttgtgagagagttgg
aactgaaggcttgggtcctctggaaaagcagtcagtgtttttatttttta
aagatttatttatttattttatgtatatgagtacagtgtagctgtcttca
aacacaccagaagaggacatcagatctcattacagatggttgtgagccac
catgtagttgctgggaattgaactcaggatccctagaagagccatcagta
ttcttaattactgagccatctctacagccccttgacatcctcttctgacc
tctgcaggcaccagacatgaattcaatacacagtaaaaattctaatttaa
aaaatactaaaatgatactttaaaccttaccatagccataatcatattaa
agatgaaatactctaaacattcctaaaaaaagacacaggttaacagatta
tatttataacaaagcaaatccaagaccactatgtatgtatatatacatag
tgttgacaataattatactctaagctggaccagtggcacaggcctgtgat
cacaatcctcaggagtctgaggcaggaggattgctctttaatgcctggtc
ctactacacatttccaggtgagccaaggctacatgatggagactcctcta
aggcagaaagaggagggggcttcccaggactcttctgataagcactcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86251524_86252559
seq2: B6Ng01-256G10.b_44_1073 (reverse)

seq1  AAACTCTTTTGATTTGTTATGGTCATTTTTCCTTGTTCCAAATATTCTTT  50
      |||||| |||||||||| |||||||||||    |||||||||||||||||
seq2  AAACTC-TTTGATTTGTAATGGTCATTTT---CTGTTCCAAATATTCTTT  46

seq1  CTTAACTAATTGTTTTGATTTACCCCCATAAAGACAACTTTCAAAACTAC  100
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  CTTAACTAATTGTTTTGATTTA-CCCCATAAAGACAACTTTC-AAACTAC  94

seq1  AGAAGCTTGAGACCACCTGAAATCTTACTATGCTTTGATCATCTGATGTT  150
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  AGAAGCTTGAGACCAACTGAAATCTTACTATGC-TTGATCATCTGATGTT  143

seq1  TGGGAGACTCTGTCAGACCTGATTCTCCCTTCATACATCCAACCCTTGCT  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGGAGACTCTGTCAGAACTGATTCTCCCTTCATACATCCAACCCTTGCT  193

seq1  TCTCTATTCATCCCTGTTAATCCCACTGTTAGATGG-AACCAAACTGATG  249
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTCTATTCATCCCTGTTAATCCCACTGTTAGATGGAAACCAAACTGATG  243

seq1  ATACATTGTAGCAGGCCCACTTAAAAACATGCCGAATTCATTCCTCCAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGTAGCAGGCCCACTTAAAAACATGCCGAATTCATTCCTCCAGT  293

seq1  ACCCAAATGTCAGAGCCACCCATCATCGCCTGACATGGAGGGACACATGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAATGTCAGAGCCACCCATCATCGCCTGACATGGAGGGACACATGG  343

seq1  CAGAGGAGAAATCAAAGTAGAATCAGAGAATTTGAACATTTTCCCCCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGAAATCAAAGTAGAATCAGAGAATTTGAACATTTTCCCCCAAA  393

seq1  ATGGTAGCAAATAATGTAAAACATATAACCTTGAAAAAAGATACGACTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGCAAATAATGTAAAACATATAACCTTGAAAAAAGATACGACTTT  443

seq1  GGGAGCAGCTTGTACAGTTGAGGGGCCCTGGACAGAAGCCCAAAAAGCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAGCTTGTACAGTTGAGGGGCCCTGGACAGAAGCCCAAAAAGCTT  493

seq1  AGGAAAACGGCCTCTGGTTGCTGGACTTAAAAGAGTTTTGGACACACAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACGGCCTCTGGTTGCTGGACTTAAAAGAGTTTTGGACACACAGT  543

seq1  ATATTAAGGTCTGAAGGTTTTAGACATGTCCCAAATGTACGAAAATACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGGTCTGAAGGTTTTAGACATGTCCCAAATGTACGAAAATACAG  593

seq1  CTGTTCTGTTCATGGCTCTCTTTCCCTTCGTGCTCCTCAGCTGTGGCAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGTTCATGGCTCTCTTTCCCTTCGTGCTCCTCAGCTGTGGCAGG  643

seq1  AGGACCCTATAGCATATCCAGGTGAGGCTGAAGAGGGACCGGAAATGATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCTATAGCATATCCAGGTGAGGCTGAAGAGGGACCGGAAATGATC  693

seq1  ACCACTGTTTTATGGCTAACAGCAAACTTGGCTTCTGACACTGGTCTTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTTTTATGGCTAACAGCAAACTTGGCTTCTGACACTGGTCTTAC  743

seq1  TGTCAGGAGGCGTCTGTCACCCACAAGCCCAAGTGCCCCTCTCCTTTTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGAGGCGTCTGTCACCCACAAGCCCAAGTGCCCCTCTCCTTTTGC  793

seq1  ACATTTTTGTTTGAGGTGACCTCTCCCTTACTTTTTCAAAGTTTCTTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTGTTTGAGGTGACCTCTCCCTTACTTTTTCAAAGTTTCTTCTA  843

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGG  893

seq1  AAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAAAAGAAAGAAAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAAAAGAAAGAAAGAA  943

seq1  AGAAAGGAAAGGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAAGGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA  993

seq1  AGAAAAGAAGAGAAAAGAAGAGAAAAGAAAAGAATTC  1036
      |||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAGAGAAAAGAAGAGAAAAGAAAAGAATTC  1030

seq1: chr12_86060169_86061269
seq2: B6Ng01-256G10.g_66_1163

seq1  GAATTCATAGGAAAGTTGGAAAACACAAGCAACAAATTTGGTCTAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGAAAGTTGGAAAACACAAGCAACAAATTTGGTCTAAATTT  50

seq1  AGAACACTTCATTCAAAGGTAGTGTCTTGGTGAGTTAGTACCATTAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTTCATTCAAAGGTAGTGTCTTGGTGAGTTAGTACCATTAAGTT  100

seq1  GACAAGGCCTAGAGTCACTGGGGAGAGGGACACTCAACTGAAGAACTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGCCTAGAGTCACTGGGGAGAGGGACACTCAACTGAAGAACTGCC  150

seq1  TCCATCACTCTGGCCTGTGGGCATTGTCTTGATTAATAATTGATGTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCACTCTGGCCTGTGGGCATTGTCTTGATTAATAATTGATGTGGGA  200

seq1  GGACTTGGCTCAGTCCAGCCCACTGGAGAGAGAGTTCAGCAGTTATGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGGCTCAGTCCAGCCCACTGGAGAGAGAGTTCAGCAGTTATGAGC  250

seq1  ACTTGATGCTCTTCTGGAGACCCTGGTTCAGGAGTTGGTGGTACACAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATGCTCTTCTGGAGACCCTGGTTCAGGAGTTGGTGGTACACAGCC  300

seq1  ACCTGGAACTCCAGCTCCAGGGGATCTGACTCCTCCTCCTCCCCCTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAACTCCAGCTCCAGGGGATCTGACTCCTCCTCCTCCCCCTCCTC  350

seq1  TTCCCTCTCCTCCTTCTCCTCTTTATTTATTTATTTATTTATTTTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTCCTCCTTCTCCTCTTTATTTATTTATTTATTTATTTTTATTT  400

seq1  TTATGCACACTGGTGTTTTGCCTATATGTATATCTTTGTGAGAGAGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCACACTGGTGTTTTGCCTATATGTATATCTTTGTGAGAGAGTTGG  450

seq1  AACTGAAGGCTTGGGTCCTCTGGAAAAGCAGTCAGTGTTTTTATTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGGCTTGGGTCCTCTGGAAAAGCAGTCAGTGTTTTTATTTTTTA  500

seq1  AAGATTTATTTATTTATTTTATGTATATGAGTACAGTGTAGCTGTCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATTTATTTATTTTATGTATATGAGTACAGTGTAGCTGTCTTCA  550

seq1  AACACACCAGAAGAGGACATCAGATCTCATTACAGATGGTTGTGAGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACCAGAAGAGGACATCAGATCTCATTACAGATGGTTGTGAGCCAC  600

seq1  CATGTAGTTGCTGGGAATTGAACTCAGGATCCCTAGAAGAGCCATCAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGTTGCTGGGAATTGAACTCAGGATCCCTAGAAGAGCCATCAGTA  650

seq1  TTCTTAATTACTGAGCCATCTCTACAGCCCCTTGACATCCTCTTCTGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATTACTGAGCCATCTCTACAGCCCCTTGACATCCTCTTCTGACC  700

seq1  TCTGCAGGCACCAGACATGAATTCAATACACAGTAAAAATTCTAATTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGCACCAGACATGAATTCAATACACAGTAAAAATTCTAATTTAA  750

seq1  AAAATACTAAAATGATACTTTAAACCTTACCATAGCCATAATCATATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTAAAATGATACTTTAAACCTTACCATAGCCATAATCATATTAA  800

seq1  AGATGAAATACTCTAAACATTCCTAAAAAAAGACACAGGTTAACAGATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAATACTCTAAACATTCCTAAAAAAAGACACAGGTTAACAGATTA  850

seq1  TATTTATAACAAAGCAAAATCCAAGACCACTATGTATGTATATATACATA  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATTTATAACAAAGC-AAATCCAAGACCACTATGTATGTATATATACATA  899

seq1  GTGTTGACAATAATTATACTCTAAGCTGGACCAGGTGGCACAGGCCTGTG  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGTTGACAATAATTATACTCTAAGCTGGACCA-GTGGCACAGGCCTGTG  948

seq1  ATCACAAATCCTCAGGAGTCTGAGGCAGGAGGATTGCTCTTTAATGCCTG  1000
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAC-AATCCTCAGGAGTCTGAGGCAGGAGGATTGCTCTTTAATGCCTG  997

seq1  GT-CTACTACACA-TTCCAGGTGAGCCAAGGCTACATGAT-GAGACT-CT  1046
      || |||||||||| |||||||||||||||||||||||||| |||||| ||
seq2  GTCCTACTACACATTTCCAGGTGAGCCAAGGCTACATGATGGAGACTCCT  1047

seq1  CTAAAAGCAGAAGAAGAAGGGGGCTTCCCAGGGACTCTTTCTGGATAAGC  1096
      || || ||||||  || ||||||||||||| |||||| |||| |||||||
seq2  CT-AAGGCAGAAAGAGGAGGGGGCTTCCCA-GGACTC-TTCT-GATAAGC  1093

seq1  ACTCG  1101
      |||||
seq2  ACTCG  1098