BAC Information

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BAC

Clone NameB6Ng01-256O18
Chromosome12 (Build37)
Map Location 87,168,003 - 87,169,159
singlet/doubletsinglet
Overlap geneTtll5
Upstream geneLtbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik
Downstream geneTgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256O18.bB6Ng01-256O18.g
ACCGA062756GA062757
length1,1581,170
definitionB6Ng01-256O18.b B6Ng01-256O18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttggagcttcagttacagagtttgtggcagcttgatggagtgc
tgggaaatgaacctggctcctctgcaggagcaggaagctctcataactgt
tgagccatccttctagtccctgcagttggctttgttgtgggttttggggg
attgaacatggggcatcaggcttccaagcaagtacatttacctgatgcac
catctcctggctctaataggtgaactgagtgcagtacggatgtggaagtc
agaggacaactttctggaatctgttctctccttccatcatgtgggtcctg
ggaattgaacttgggtcaggtttggcgacaagcaccttatccgctgagtc
atcttgtcagccttgtgtcttgaccatagcttctagtaattgaaaaattg
gagattttgaaaattttagagattggtgaaacgttaagttcttaggctct
gaccttgactctataagttttctctgaagcatttacagctgtagaacggt
gatgatatgaagggcaggccacacacagcagaacctctgtgaagatgctc
cgatgagaatactagagctctgtagcctgtgccgtgttcattgaaccaca
agggctctctgtaagttctttcaggttaagggtcaaggtcattcattgac
tgttgggtcctcataatgaaaatgattaacagggccaactgtagcttcta
gagatggtagagtagatcatttaatatgcacactgagagattttaattta
aaaatattatttccaccttattagactcacaaatatcaaagaatctccac
tttacagagaagagatggattgtgattctaatttagctctcagttttgag
gacttttacctctcataattttactcgatatggaagagaaaagctgatag
gcttatctaatttatttatatataactctaagctctcatatatgtatact
gcactttcatcctctccttccactccctctcctcaaattcatagcttctt
tttaaaaaaattattctttacataaatgtacacacactcacacacacaca
aatacacaaataaatatatcttgaggcccagggtggactgagctccacta
ggtacccagcctgggccctcagatgcgtagccagtctctggcctcagcta
ctagtgct
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagataaaaaattcaggtgacagc
agatgctggcgaggatgtagagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactaccagaggatcctgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gctcctcaacagaggaatggatacagaaagtgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaagcaa
atggatggacctggagggcattatcctgagtgaggtaacccaatcacaaa
ggaactcgaacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaacgcatgaaactcaa
gaagaacgaagaccaaagtgtggacactttgccccttcttagaaatggga
acaaaacacccatggaaaggaggtacagagacaaaagttggagctgtgac
gagaggatggactatctagtgatcaccatatccagggatccatcccataa
tcagcttccaaatgctgacaccattgcatacactagcaagattttgctga
aaggacccagatatagctgtctcttgtaagtctatgccggggcctagcaa
cacagaagtggatgctcacagtcagctattggatgggtcacacggccccc
aatggaggagctagagaaagtacccaaggagcttaaagggaactgcacct
ataggtggacacaatatgactaccagtacccggagctcttgtcttctagc
tgcatatgtatcaaagatggcctagtcagtccattcacttgaaagaagag
gtccttgggaacttgcactttatgttccagttacaggacgccaaggctcc
aaaagttaaggaatgtgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_87168003_87169159
seq2: B6Ng01-256O18.b_47_1204

seq1  GAATTCCTTGGAGCTTCAGTTACAGAGTTTGTGGCAGCTTGATGGAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGAGCTTCAGTTACAGAGTTTGTGGCAGCTTGATGGAGTGC  50

seq1  TGGGAAATGAACCTGGCTCCTCTGCAGGAGCAGGAAGCTCTCATAACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATGAACCTGGCTCCTCTGCAGGAGCAGGAAGCTCTCATAACTGT  100

seq1  TGAGCCATCCTTCTAGTCCCTGCAGTTGGCTTTGTTGTGGGTTTTGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCCTTCTAGTCCCTGCAGTTGGCTTTGTTGTGGGTTTTGGGGG  150

seq1  ATTGAACATGGGGCATCAGGCTTCCAAGCAAGTACATTTACCTGATGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACATGGGGCATCAGGCTTCCAAGCAAGTACATTTACCTGATGCAC  200

seq1  CATCTCCTGGCTCTAATAGGTGAACTGAGTGCAGTACGGATGTGGAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTGGCTCTAATAGGTGAACTGAGTGCAGTACGGATGTGGAAGTC  250

seq1  AGAGGACAACTTTCTGGAATCTGTTCTCTCCTTCCATCATGTGGGTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACAACTTTCTGGAATCTGTTCTCTCCTTCCATCATGTGGGTCCTG  300

seq1  GGAATTGAACTTGGGTCAGGTTTGGCGACAAGCACCTTATCCGCTGAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGAACTTGGGTCAGGTTTGGCGACAAGCACCTTATCCGCTGAGTC  350

seq1  ATCTTGTCAGCCTTGTGTCTTGACCATAGCTTCTAGTAATTGAAAAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTCAGCCTTGTGTCTTGACCATAGCTTCTAGTAATTGAAAAATTG  400

seq1  GAGATTTTGAAAATTTTAGAGATTGGTGAAACGTTAAGTTCTTAGGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTGAAAATTTTAGAGATTGGTGAAACGTTAAGTTCTTAGGCTCT  450

seq1  GACCTTGACTCTATAAGTTTTCTCTGAAGCATTTACAGCTGTAGAACGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGACTCTATAAGTTTTCTCTGAAGCATTTACAGCTGTAGAACGGT  500

seq1  GATGATATGAAGGGCAGGCCACACACAGCAGAACCTCTGTGAAGATGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATATGAAGGGCAGGCCACACACAGCAGAACCTCTGTGAAGATGCTC  550

seq1  CGATGAGAATACTAGAGCTCTGTAGCCTGTGCCGTGTTCATTGAACCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGAGAATACTAGAGCTCTGTAGCCTGTGCCGTGTTCATTGAACCACA  600

seq1  AGGGCTCTCTGTAAGTTCTTTCAGGTTAAGGGTCAAGGTCATTCATTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCTCTGTAAGTTCTTTCAGGTTAAGGGTCAAGGTCATTCATTGAC  650

seq1  TGTTGGGTCCTCATAATGAAAATGATTAACAGGGCCAACTGTAGCTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTCCTCATAATGAAAATGATTAACAGGGCCAACTGTAGCTTCTA  700

seq1  GAGATGGTAGAGTAGATCATTTAATATGCACACTGAGAGATTTTAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGTAGAGTAGATCATTTAATATGCACACTGAGAGATTTTAATTTA  750

seq1  AAAATATTATTTCCACCTTATTAGACTCACAAATATCAAAGAATCTCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTATTTCCACCTTATTAGACTCACAAATATCAAAGAATCTCCAC  800

seq1  TTTACAGAGAAGAGATGGATTGTGATTCTAATTTAGCTCTCAGTTTTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAGAAGAGATGGATTGTGATTCTAATTTAGCTCTCAGTTTTGAG  850

seq1  GACTTTTACCTCTCATAATTTTACTCGATATGGAAGAGAAAAGCTGATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTACCTCTCATAATTTTACTCGATATGGAAGAGAAAAGCTGATAG  900

seq1  GCTTATCTAATTTATTTATATATAACTCTAAGCTCTCATATATGTATACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCTAATTTATTTATATATAACTCTAAGCTCTCATATATGTATACT  950

seq1  GCACTTTCATCCTCTCCTTCCACTCCCTCTCCTCAAATTCATAGCTTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTCATCCTCTCCTTCCACTCCCTCTCCTCAAATTCATAGCTTCTT  1000

seq1  TTTAAAAAAATTA-TCTTTACATAAATGTACACACACTCACACACACACA  1049
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAATTATTCTTTACATAAATGTACACACACTCACACACACACA  1050

seq1  AATACACAAATAAATATAATCTTGAGG-CCAGGGTGACCTGAAGCT-CAC  1097
      ||||||||||||||||| ||||||||| ||||||||  ||| |||| |||
seq2  AATACACAAATAAATAT-ATCTTGAGGCCCAGGGTGGACTG-AGCTCCAC  1098

seq1  TAGGTAACCCAGGCTGG--CCTCAGATGCGTAG-CAGTCCTCCTGCCTCA  1144
      ||||| |||||| ||||  |||||||||||||| |||| |||  ||||||
seq2  TAGGT-ACCCAGCCTGGGCCCTCAGATGCGTAGCCAGT-CTCTGGCCTCA  1146

seq1  GCTTCCTAGTGCT  1157
      || | ||||||||
seq2  GC-TACTAGTGCT  1158