BAC Information

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BAC

Clone NameB6Ng01-257K12
ChromosomeY (Build37)12 (Build37)
Map Location 1,956,210 - 1,956,3165,476,863 - 5,477,569
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry
Downstream geneLOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257K12.bB6Ng01-257K12.g
ACCGA063299GA063300
length1,0021,099
definitionB6Ng01-257K12.b B6Ng01-257K12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,956,210 - 1,956,316)(5,476,863 - 5,477,569)
sequence
gaattctttttttttcttttttcttttttcttttttccattttttattag
gtatttaactcatttacatttccaatgctataccaaaagtcccccatatc
cactcaccccgaaaatctatacccagatttaaaaacatttctcatgatga
tgatagaggacatcaagaaggactttcaaaagtcacttaaagaattacag
gagagcactgctaaagagttacaggcccttaaagaaaagcaggaaaacac
aaccaaacaggtagaagccctttaaaaaacaggaaaacacaaccaaaaac
gtgatggaaatgaacaaaaccatactagaactaaaacgggaagtagacac
aataaagaaaacccaaagcgaggcaacgctggagatagaaaccctaggaa
atagatctggaaccatagaggcaagcatcagcaacagaatacaagaaatg
gaagagagaatctcaggtgcagaagattccatagaaaacatcgacacaaa
agtcaaagaaaatacaaaatgcaaaaggatcctaactcaaaacatccagg
aaatccaggacacaatgagaagaccaaacctacagataataggaattgat
gagaatgaagattttcaacttaaagggccagctaatatcttcaacaaaat
aatagaagaaaacttcccaaacataaagaaagagatgcccatgatcatac
aagaagcctacagaactccaaatagactggaccagaaaagaaattcctcc
cgacacataataatcagaacaacaaatgcactaaataaagatagactatt
aaaagcagtaagggagaaaggtcaagtaacatataaaggaaggcctatca
gaattacaccagacttttcaccagagactatgaaagccagaagagcctgg
acagatgttatacagacactaagagaacacaaatgccagcccaggctact
atacccgggccaaactctcaattaccatagatggagaaaccaaagtatcc
ac
gaattctttgtttagctctgaaccccattacctatttaggattggtaaaa
atcctttcccaatctgttggtggcctttttgtcttagggaaacaacaccc
ttcacaatagtcacaaataatataaaataccttggtgtgactctaaggaa
gtgaagatctgtatgataagaacttcaagtctctgaagaaagaaattaaa
gaagatctcagaagatggaaagatctcccatgctcatggatcagcaggat
taatatagtaaaaatggctatcttgcctaaagcaatttacagattcaatg
caatccctatcaaaattctaactcaattcttcactgagatagaaagggca
atttgcaaattcatctggaaaaataaaaaacctaggatagcaaaaactat
tctcaacaataaaaataccttttgtggaatcaccatacctgacgttaagc
tgtactacagagcaattgtgataaaaactgcatggtactggtccaatgac
agacaggtagatcaatggaatagaattgaagacccagaaatgaatccaca
cacctatggtcccttgatctttaacaagggagctaaaaccatctagtgga
aaaaaagacagccttttcaacaaatggtgctggatcaactggcggttatc
atgtagaagaatgcgagttgatccattcttatctccttgtataaacctca
agtctaagtggatcaaagacctccacataagaccagagacactgaaatta
atagaggagaaagtagggaaacgcctcgaagatatgggcacaggaggaaa
attcctaaacagaacaacaatgggcttgtgctgtaagatcaagaattgac
aaatgggacctcataaatttgcaaagcttctgtagatctttttttctgaa
ggtaaaattaattcaaaccatttccctaaaactcctatctcctgacctca
atcatgtgcctgggatattatctattgcataattctaagctcccatgtaa
catggaaatgtttcgattactgacaagacgtgatgggtaccatgacttct
tcttaatggacttgagacctgctcacagagggagagcatgcctgttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1956210_1956316
seq2: B6Ng01-257K12.b_51_153

seq1  TTTTTTTTCTTTTTTCTTTTCATTCTTTTTTTTCCATTTTTTATTAGGTA  50
      ||||||||||||||||||||  |||  |||||||||||||||||||||||
seq2  TTTTTTTTCTTTTTTCTTTT--TTC--TTTTTTCCATTTTTTATTAGGTA  46

seq1  TTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCAC  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCAC  96

seq1  CCACCCC  107
       ||||||
seq2  TCACCCC  103

seq1: chr12_5476863_5477569
seq2: B6Ng01-257K12.g_457_1164

seq1  AAAAACTATTCTCAACAATAAAAATACCTTTTGTGGAATCACCATACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTATTCTCAACAATAAAAATACCTTTTGTGGAATCACCATACCTG  50

seq1  ACGTTAAGCTGTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTAAGCTGTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGG  100

seq1  TCCAATGACAGACAGGTAGATCAATGGAATAGAATTGAAGACCCAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGACAGACAGGTAGATCAATGGAATAGAATTGAAGACCCAGAAAT  150

seq1  GAATCCACACACCTATGGTCCCTTGATCTTTAACAAGGGAGCTAAAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCACACACCTATGGTCCCTTGATCTTTAACAAGGGAGCTAAAACCA  200

seq1  TCTAGTGGAAAAAAAGACAGCCTTTTCAACAAATGGTGCTGGATCAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGGAAAAAAAGACAGCCTTTTCAACAAATGGTGCTGGATCAACTG  250

seq1  GCGGTTATCATGTAGAAGAATGCGAGTTGATCCATTCTTATCTCCTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTATCATGTAGAAGAATGCGAGTTGATCCATTCTTATCTCCTTGTA  300

seq1  TAAACCTCAAGTCTAAGTGGATCAAAGACCTCCACATAAGACCAGAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTCAAGTCTAAGTGGATCAAAGACCTCCACATAAGACCAGAGACA  350

seq1  CTGAAATTAATAGAGGAGAAAGTAGGGAAACGCCTCGAAGATATGGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTAATAGAGGAGAAAGTAGGGAAACGCCTCGAAGATATGGGCAC  400

seq1  AGGAGGAAAATTCCTAAACAGAACAACAAT-GGCTTGTGCTGTAAGATCA  449
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGAGGAAAATTCCTAAACAGAACAACAATGGGCTTGTGCTGTAAGATCA  450

seq1  AGAATTGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAGATC-TT  498
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  AGAATTGACAAATGGGACCTCATAAATTTGCAAAGCTTCTGTAGATCTTT  500

seq1  TTTTCTGAAGGTAAAATTAATTCAAACCATT--CCTAAAACTCCTATCTC  546
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  TTTTCTGAAGGTAAAATTAATTCAAACCATTTCCCTAAAACTCCTATCTC  550

seq1  CTGACCTCAATCATGTGCCTGGATAATTATCTATTGCATAATTCTAAGCT  596
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  CTGACCTCAATCATGTGCCTGGGATATTATCTATTGCATAATTCTAAGCT  600

seq1  CCCATGTAACAATGGAAATGTTTCGATTACTGACAAGACGTGATGGTAAC  646
      |||||||||| |||||||||||||||||||||||||||||||||||  ||
seq2  CCCATGTAAC-ATGGAAATGTTTCGATTACTGACAAGACGTGATGGGTAC  649

seq1  CAATGACT--CTCTAATTGGACTTGAGACCTGCTCAACAAGAGGGAGAGC  694
      | ||||||   ||| | |||||||||||||||||||   |||||||||||
seq2  C-ATGACTTCTTCTTAATGGACTTGAGACCTGCTCA--CAGAGGGAGAGC  696

seq1  ATGCCCTGTTCTG  707
      ||| |||||||||
seq2  ATG-CCTGTTCTG  708