BAC Information

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BAC

Clone NameB6Ng01-258F05
Chromosome12 (Build37)
Map Location 106,774,484 - 106,950,321
singlet/doubletdoublet
Overlap geneBdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7
Upstream geneDicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik
Downstream genePapola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258F05.bB6Ng01-258F05.g
ACCGA063794GA063795
length9701,086
definitionB6Ng01-258F05.b B6Ng01-258F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,774,484 - 106,775,454)(106,949,251 - 106,950,321)
sequence
gaattcaaacagcccaaagaagagggattgggactatttcagtatagagg
ggcttcagagcagggaaccccgctttactctctgcctctctgctaacagc
aaatgttcactctgtgagacatttttctgtgtcctgctgtgtcttggggg
acagggagtgagcgtgtgaatgtggacaggaatggcagccagctttgggt
aaagacaaggagcggtgggaggggcaagccaggcatggctacctaggact
gtgaagatctggactccgggccaagagatgcccactgtagagtgaacacg
gggtcctctgggtaagcagtcaagatcacatgccgcatcaatgtgacagt
ctctcccaggcctttgcatctttatgcataactagtgtgagtgaaatgtc
agttggaggcacagggacagtccagctccctgctgggtggatgaggacaa
gataagccataactggcatcccatgagatacagtagattcaggttctcat
ccgtgagaacttaccccatcctttctccatcttgggaagagctttctatt
atcccagatgacaaaggagggagagaggtctctagctgatctcaccacca
cagccagagaactcccgtctggcccacactgtgaaggcccctctctcatg
ccagcagatcacagagaggccacctgtgagccagccacacttgctttgtc
cccaggtgggcagccctactgtggcatgcttctgctagctttcctattct
aggactggaagcttcaggtcagagagccgaggtggagttcagctccaaat
tgcaaacctcgaggggagccacagtaaagtccatgcttgacagaagagtc
acgaatggacttgctaaacttccggctctgagcaaggggttgagggcagc
tgaaaaccagttgaggtgggaagagccccattcaaggtgtgggaggtcca
aatggcttcaaggccttagg
gaattccagttggctgcatgagctcacatagtagaacacttggctctcag
atggcggctgccacaccatttgtactgagtgaacttgaccgtggcattct
tctgtttttgtctaagtgctggaatacaggtgtgagctaccaggaccagc
ttcgggacagatctcagtcacacctttctcactttttgcttgtaattaat
gtacatatcttagttagggtctctattgctgtgatgaaacaccatgacca
aaaacaagtcagggaggaaagggttcatttggcttacacttccacattgt
agcttatcattgaaagaacccaggacaggaactcaaacagggcagaaact
tggaggcaggagctgatgcagaggccgtggaggggagcgtcacttactgg
cttactacccatggctttctcattctgtttccttatagaacccagaagaa
ctagtggcccagggatgataccacccacaataggctggactctccccaca
tcaatcactaattaagaaaatgccctacagctgggatcttatggaggcat
cttctcaattaaggttccctcctttcagataactctcgtttgtgtgccaa
gttgatataagagtagccagcacaataggccaatgagttaaatctttagg
cgtggacaggttattgggcgcacagagatttacagtgggttcagagagtc
gagatccaggtagacagagaggttaccctgggagagaaagcacctcttct
aggggtacaaaaatgtctcccagtgagcacaaggtccaatttgtcaggtg
aaaggttgcacagctgctctgtaggcagagtgatgcaaaggtatcaagtt
cccagggagctcaataccctacagcatccctcttacctgtaaggtatatt
cacagggccctccatagagagattgttatgagtttgtaggtaaagactag
agcaatcttcttccaagaacacttcatttaaattctttgcctttggcccc
agatttaaggtggaaacattggtggtgtcctcttgtccacagtagaaagg
tggtgtccctggggcttggagagaatgggcccagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_106774484_106775454
seq2: B6Ng01-258F05.b_44_1013

seq1  GAATTCAAACAGCCCAAAGAAGAGGGATTGGGACTATTTCAGTATAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAGCCCAAAGAAGAGGGATTGGGACTATTTCAGTATAGAGG  50

seq1  GGCTTCAGAGCAGGGAACCCCGCTTTACTCTCTGCCTCTCTGCTAACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAGAGCAGGGAACCCCGCTTTACTCTCTGCCTCTCTGCTAACAGC  100

seq1  AAATGTTCACTCTGTGAGACATTTTTCTGTGTCCTGCTGTGTCTTGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCACTCTGTGAGACATTTTTCTGTGTCCTGCTGTGTCTTGGGGG  150

seq1  ACAGGGAGTGAGCGTGTGAATGTGGACAGGAATGGCAGCCAGCTTTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAGTGAGCGTGTGAATGTGGACAGGAATGGCAGCCAGCTTTGGGT  200

seq1  AAAGACAAGGAGCGGTGGGAGGGGCAAGCCAGGCATGGCTACCTAGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAGGAGCGGTGGGAGGGGCAAGCCAGGCATGGCTACCTAGGACT  250

seq1  GTGAAGATCTGGACTCCGGGCCAAGAGATGCCCACTGTAGAGTGAACACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGATCTGGACTCCGGGCCAAGAGATGCCCACTGTAGAGTGAACACG  300

seq1  GGGTCCTCTGGGTAAGCAGTCAAGATCACATGCCGCATCAATGTGACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTCTGGGTAAGCAGTCAAGATCACATGCCGCATCAATGTGACAGT  350

seq1  CTCTCCCAGGCCTTTGCATCTTTATGCATAACTAGTGTGAGTGAAATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCAGGCCTTTGCATCTTTATGCATAACTAGTGTGAGTGAAATGTC  400

seq1  AGTTGGAGGCACAGGGACAGTCCAGCTCCCTGCTGGGTGGATGAGGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAGGCACAGGGACAGTCCAGCTCCCTGCTGGGTGGATGAGGACAA  450

seq1  GATAAGCCATAACTGGCATCCCATGAGATACAGTAGATTCAGGTTCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGCCATAACTGGCATCCCATGAGATACAGTAGATTCAGGTTCTCAT  500

seq1  CCGTGAGAACTTACCCCATCCTTTCTCCATCTTGGGAAGAGCTTTCTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGAGAACTTACCCCATCCTTTCTCCATCTTGGGAAGAGCTTTCTATT  550

seq1  ATCCCAGGATGACAAAGGAGGGAGAGAGGTCTCTAGCTGATCTCACCACC  600
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCA-GATGACAAAGGAGGGAGAGAGGTCTCTAGCTGATCTCACCACC  599

seq1  ACAGCCAGAGAACTCCCGTCTGGCCCACACTGTGAAGGCCCCTCTCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGAGAACTCCCGTCTGGCCCACACTGTGAAGGCCCCTCTCTCAT  649

seq1  GCCAGCAGATCACAGAGAGGCCACCTGTGAGCCAGCCACACTTGCTCTGT  700
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCCAGCAGATCACAGAGAGGCCACCTGTGAGCCAGCCACACTTGCTTTGT  699

seq1  CCCCAGGTGGGCAGCCCTACTGTGGCATGC-TCTGCTAGCTTTCCTA-TC  748
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  CCCCAGGTGGGCAGCCCTACTGTGGCATGCTTCTGCTAGCTTTCCTATTC  749

seq1  TA-GACTGGAAGCTTCAGGTCAGAGAGCCGAG--TGAGTTCAGCT-CAGA  794
      || |||||||||||||||||||||||||||||   |||||||||| || |
seq2  TAGGACTGGAAGCTTCAGGTCAGAGAGCCGAGGTGGAGTTCAGCTCCAAA  799

seq1  TTGCAGAACCTCGA-GGGAGCCACAGTAAAGTCCAATGCTGGACAGAAGA  843
      ||||| |||||||| ||||||||||||||||||| ||||| |||||||||
seq2  TTGCA-AACCTCGAGGGGAGCCACAGTAAAGTCC-ATGCTTGACAGAAGA  847

seq1  GTACAGAATGGACATGCTAGAC-TCCGCTTCTGAGCAAGGTGTTGAGGGA  892
      ||   |||||||| ||||| || ||||  ||||||||||| |||||||| 
seq2  GTCACGAATGGACTTGCTAAACTTCCGGCTCTGAGCAAGGGGTTGAGGG-  896

seq1  CAGCTG-AGACCAGTTGAAGGTGGGGAGAGCCCCCACATCCAAAGGTGT-  940
      |||||| | |||||||| ||||||| |||||||   ||| | ||||||| 
seq2  CAGCTGAAAACCAGTTG-AGGTGGGAAGAGCCC---CATTC-AAGGTGTG  941

seq1  GGAGGTCCAGATGGCTTCAGAGGCCTCTAGG  971
      ||||||||| ||||||||| |||||| ||||
seq2  GGAGGTCCAAATGGCTTCA-AGGCCT-TAGG  970

seq1: chr12_106949251_106950321
seq2: B6Ng01-258F05.g_65_1150 (reverse)

seq1  TACTGGGCC--ATCTCTCC-AGCCC--AGGACA-CACCTTTCTACTGT-G  43
      |||||||||   ||||||| |||||   ||||| |||||||||||||| |
seq2  TACTGGGCCCATTCTCTCCAAGCCCCAGGGACACCACCTTTCTACTGTGG  50

seq1  AC-AGAGGACACCA-CAATGTTTCCACTTTAAATCTGGGGCCAAA-GCAA  90
      || ||||||||||| |||||||||||| ||||||||||||||||| ||||
seq2  ACAAGAGGACACCACCAATGTTTCCACCTTAAATCTGGGGCCAAAGGCAA  100

seq1  AGAATTTAAATGAGGTGTTCTTGGAAG-AGATTGCTCTAGTCTTTACCTA  139
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  AGAATTTAAATGAAGTGTTCTTGGAAGAAGATTGCTCTAGTCTTTACCTA  150

seq1  CAAACTCATAACAATCTCTCTATGGA-GGCCCTGTGAATATACCTTACAG  188
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAAACTCATAACAATCTCTCTATGGAGGGCCCTGTGAATATACCTTACAG  200

seq1  GTAAGAGGGATGCTGTAGGGTATTGAGCT-CCTGGGAACTTGATACC-TT  236
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  GTAAGAGGGATGCTGTAGGGTATTGAGCTCCCTGGGAACTTGATACCTTT  250

seq1  GCATCACTCTGCCTACAGAGCAGCTGTGCAACC-TTCACCTGACAAATTG  285
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCATCACTCTGCCTACAGAGCAGCTGTGCAACCTTTCACCTGACAAATTG  300

seq1  GACCTTGTGCTCACTGGGAGACATTTTTGTACCCCTAGAAGAGGTGCTTT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGTGCTCACTGGGAGACATTTTTGTACCCCTAGAAGAGGTGCTTT  350

seq1  CTCTCCCAGGGTAACCTCTCTGTCTACCTGGATCTCGACTCTCTGAACCC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCAGGGTAACCTCTCTGTCTACCTGGATCTCGACTCTCTGAACCC  400

seq1  ACTGTAAATCTCTGTGCGCCCAATAACCTGTCCACGCCTAAAGATTTAAC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAATCTCTGTGCGCCCAATAACCTGTCCACGCCTAAAGATTTAAC  450

seq1  TCATTGGCCTATTGTGCTGGCTACTCTTATATCAACTTGGCACACAAACG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGCCTATTGTGCTGGCTACTCTTATATCAACTTGGCACACAAACG  500

seq1  AGAGTTATCTGAAAGGAGGGAACCTTAATTGAGAAGATGCCTCCATAAGA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATCTGAAAGGAGGGAACCTTAATTGAGAAGATGCCTCCATAAGA  550

seq1  TCCCAGCTGTAGGGCATTTTCTTAATTAGTGATTGATGTGGGGAGAGTCC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCTGTAGGGCATTTTCTTAATTAGTGATTGATGTGGGGAGAGTCC  600

seq1  AGCCTATTGTGGGTGGTATCATCCCTGGGCCACTAGTTCTTCTGGGTTCT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATTGTGGGTGGTATCATCCCTGGGCCACTAGTTCTTCTGGGTTCT  650

seq1  ATAAGGAAACAGAATGAGAAAGCCATGGGTAGTAAGCCAGTAAGTGACGC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAAACAGAATGAGAAAGCCATGGGTAGTAAGCCAGTAAGTGACGC  700

seq1  TCCCCTCCACGGCCTCTGCATCAGCTCCTGCCTCCAAGTTTCTGCCCTGT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCACGGCCTCTGCATCAGCTCCTGCCTCCAAGTTTCTGCCCTGT  750

seq1  TTGAGTTCCTGTCCTGGGTTCTTTCAATGATAAGCTACAATGTGGAAGTG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCCTGTCCTGGGTTCTTTCAATGATAAGCTACAATGTGGAAGTG  800

seq1  TAAGCCAAATGAACCCTTTCCTCCCTGACTTGTTTTTGGTCATGGTGTTT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAAATGAACCCTTTCCTCCCTGACTTGTTTTTGGTCATGGTGTTT  850

seq1  CATCACAGCAATAGAGACCCTAACTAAGATATGTACATTAATTACAAGCA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGCAATAGAGACCCTAACTAAGATATGTACATTAATTACAAGCA  900

seq1  AAAAGTGAGAAAGGTGTGACTGAGATCTGTCCCGAAGCTGGTCCTGGTAG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGAGAAAGGTGTGACTGAGATCTGTCCCGAAGCTGGTCCTGGTAG  950

seq1  CTCACACCTGTATTCCAGCACTTAGACAAAAACAGAAGAATGCCACGGTC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACCTGTATTCCAGCACTTAGACAAAAACAGAAGAATGCCACGGTC  1000

seq1  AAGTTCACTCAGTACAAATGGTGTGGCAGCCGCCATCTGAGAGCCAAGTG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCACTCAGTACAAATGGTGTGGCAGCCGCCATCTGAGAGCCAAGTG  1050

seq1  TTCTACTATGTGAGCTCATGCAGCCAACTGGAATTC  1071
      ||||||||||||||||||||||||||||||||||||
seq2  TTCTACTATGTGAGCTCATGCAGCCAACTGGAATTC  1086