BAC Information

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BAC

Clone NameB6Ng01-258H16
Chromosome12 (Build37)
Map Location 89,516,007 - 89,516,889
singlet/doubletsinglet
Overlap genenone
Upstream geneTmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337
Downstream geneLOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258H16.bB6Ng01-258H16.g
ACCGA063908GA063909
length1,2051,050
definitionB6Ng01-258H16.b B6Ng01-258H16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccaatttctgagtatatctatcccaattatacattctggaac
tggggaaatcaccacaggatgtgtccggggacctactggacctactgtga
gtcggacatgagtcaaaactccattaatcacctgccctccataagcccct
actttaactggagggccacaatgtttcttgggatcccctgggatcagtgt
caactcagaaccagtatccagcagaccccgaaaagtctgattatttcctt
ttccccagtgtacagttacccttgtaaaaggccgtaggtccctctgggga
agaactggagaaagggtaacagcaaaacctttgagtgtcttatcaagatc
cttcctcagaggaacctggccaccccttcattcaaggggttccggatctg
caaactgtctcaagtctggaaattgattcactggccgagattgctgttta
ccacgatctaatgtagcctttctttcatctgtttgagaatttttctgctt
atacagatcaaacaaatatgcagtaggcttcctatgtatttcattcctgg
aaacaccatgattgattagccagtaccaaaggtccaagcgagtcatgcca
ttataaatttcacctctcctgtgctgaccattactgggtatgttattata
aacattcttttgtctacgctgtccattataataactaggatcaccttgtc
tccggcgattcaatgctgccacctggcccttgttacctcgggatccaact
aaacccagtgaatttaattcatctaattgagcagaagcatctccaatgct
aagatctggcacaaggaaaagggaaagaacaaaacccttcaaatgtgctg
gtgcccctctcaccaatttgcgtcttatagagctggtgaaaggcatatct
tctggaccttcccattgtggaaaattatgctttacacaatatatccactc
tagcattgcaatttccctaagtcttaaaatcccttcatcaacactaagcc
acgggaatatcagcatctccaagtcatttccagtaggcatcttttgataa
acaacctcagcaacattcaaacaaacttttgaacaccttttactatgcga
gccttcgtattaaaccctagaatctctactcgaaggaccatgtcatagct
cgcctgcctaagttaggtccttcaccttatcccgacaccttataaatcca
tttct
gaattctgagttcaaggatattaaattgaattaagggagttgtgaccttg
tggcaagatgtgacacaatgaaatttagatccagtatggtggtgcattgc
tttaatcccaggagataaagccaagcagatctctgaggtcaaggtcagcc
agagaaagagcaagttttaggtgaagaaaagcttaaatccaggcatgatg
gtacacacctttaatcccaggagacaggcatgcagatctctgagtcaagg
tcaatctccaggccaagattcaggacagtcaagtttaggcagtgaagaag
ttggaaaagaggaagctggtgatgttgtaagagaacaaagggaaaatgtt
ccagcccctgcaagcagcagaacttgtcagctttggctgtatggctctgg
ctctatagccaagaataggagactactgagacaattggtggtggagttag
gaaattagtggtgattattaagagaccagcattgctaaggtgaaatcttc
ggggaaatgttttctgagaacacaaggaacctgtgttccagagataggca
aggttatgtgtacctcctgctgcagctggacttggtaatgtgttgagtca
cccaggtggtactggttttgagaaaaaaaaactcataaaaggaatgtcct
ctgggagcttgacttaagagaccccactctctggtctcataaaagttcaa
gcatggagtgacatccccaagatgtctgaggggaagcacttagtcaattt
caatgtataggaaaaaaaaagaaggaaagtgaaagtggatgggtggggga
tcagcagctattctgctaaagtgcctggggctatgtaccagaaagcattg
aggatgtggcagagttctttccagaatacagtcacaccttgggcttttat
acaagctatgagctgagcaattaatcacagacttactgaatgacactagg
agacaaaggtgcagcttaagtgccccttcttctctgcttctgcttctgct
tctgctcttctgcttctctgcttcttctgcttcattctgcttcatctgct

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89516007_89516889
seq2: B6Ng01-258H16.g_242_1118

seq1  AAGAAAAGCTTAAATCCAGGCATGATGGTACACACCTTTAATCCCAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGCTTAAATCCAGGCATGATGGTACACACCTTTAATCCCAGGAG  50

seq1  ACAGGCATGCAGATCTCTGAGTCAAGGTCAATCTCCAGGCCAAGATTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATGCAGATCTCTGAGTCAAGGTCAATCTCCAGGCCAAGATTCAG  100

seq1  GACAGTCAAGTTTAGGCAGTGAAGAAGTTGGAAAAGAGGAAGCTGGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCAAGTTTAGGCAGTGAAGAAGTTGGAAAAGAGGAAGCTGGTGAT  150

seq1  GTTGTAAGAGAACAAAGGGAAAATGTTCCAGCCCCTGCAAGCAGCAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAGAGAACAAAGGGAAAATGTTCCAGCCCCTGCAAGCAGCAGAAC  200

seq1  TTGTCAGCTTTGGCTGTATGGCTCTGGCTCTATAGCCAAGAGTAGGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGTCAGCTTTGGCTGTATGGCTCTGGCTCTATAGCCAAGAATAGGAGAC  250

seq1  TACTGAGACAATTGGTGATGGAGTTAGGAAATTAGTGGTGATTATTAAGA  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TACTGAGACAATTGGTGGTGGAGTTAGGAAATTAGTGGTGATTATTAAGA  300

seq1  GACCAGCATTGCTAAGGTGAAATCTTCGGGGAAATGTTTTCTGAGAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCATTGCTAAGGTGAAATCTTCGGGGAAATGTTTTCTGAGAACAC  350

seq1  AAGGAACCTGTGTTCCAGAGATAGGCAAGGTTATGTGTACCTCCTGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCTGTGTTCCAGAGATAGGCAAGGTTATGTGTACCTCCTGCTGC  400

seq1  AGCTGGACTTGGTAATGTGTTGAGTCACCCAGGTGGTACTGGTTTTGAG-  449
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCTGGACTTGGTAATGTGTTGAGTCACCCAGGTGGTACTGGTTTTGAGA  450

seq1  AAACAAAACTCATAAAAGGAATGTCCTCTGGGAGCTTGACTTAAGAGACC  499
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACTCATAAAAGGAATGTCCTCTGGGAGCTTGACTTAAGAGACC  500

seq1  CCACTCTCTGGTCTCATAAAAGTTCAAGCATGGAGTGACATCCCCAAGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCTGGTCTCATAAAAGTTCAAGCATGGAGTGACATCCCCAAGAT  550

seq1  GTCTGAGGGGAAGCACTTAGTCAATTTCAATGTATAGGAAAAAAAAAAAA  599
      ||||||||||||||||||||||||||||||||||||||    ||||||||
seq2  GTCTGAGGGGAAGCACTTAGTCAATTTCAATGTATAGG----AAAAAAAA  596

seq1  AGAAGGAAAGTGAAAGTGGATGGGT-GGGGATCAGCAGCTATTCTGCTAA  648
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAAGGAAAGTGAAAGTGGATGGGTGGGGGATCAGCAGCTATTCTGCTAA  646

seq1  AGTGCCTGGGGCTATGTACCAGAAAGCATTGAGGATGTGGCAGAGTTC-T  697
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTGCCTGGGGCTATGTACCAGAAAGCATTGAGGATGTGGCAGAGTTCTT  696

seq1  TCCAGAATACAGTCACACCTTGG--CTTTATACAAGCTATGAGCTGAGCA  745
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  TCCAGAATACAGTCACACCTTGGGCTTTTATACAAGCTATGAGCTGAGCA  746

seq1  ATTAATCACAGACTTACTGAATGACACTA-GAGACAAAAGGTGCAGC-TA  793
      ||||||||||||||||||||||||||||| ||||| ||||||||||| ||
seq2  ATTAATCACAGACTTACTGAATGACACTAGGAGAC-AAAGGTGCAGCTTA  795

seq1  AGTGCCCCTTCTTCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTTC  843
      ||||||||||||||       ||||||||||||||||||||||| |||||
seq2  AGTGCCCCTTCTTC-------TCTGCTTCTGCTTCTGCTTCTGC-TCTTC  837

seq1  TGCTTCTTCTGCTTCTTCTGCTTC-TTCTGCTTCTTCTGCT  883
      |||||| ||||||||||||||||| ||||||||| ||||||
seq2  TGCTTC-TCTGCTTCTTCTGCTTCATTCTGCTTCATCTGCT  877