BAC Information

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BAC

Clone NameB6Ng01-258J17
Chromosome12 (Build37)
Map Location 5,454,799 - 5,455,545
singlet/doubletsinglet
Overlap genenone
Upstream geneNcoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29, 2810032G03Rik
Downstream geneLOC435292, LOC100042095, LOC672098, LOC100043137, LOC238049
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258J17.bB6Ng01-258J17.g
ACCGA064004GA064005
length1,215749
definitionB6Ng01-258J17.b B6Ng01-258J17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagatttttgttgctataaggaaatagctgatataatcaagttaa
gggaatgaaaggttcattgtagctcacaattttgaagtctaaaattcatg
gccaatgcttcccattattttggggtgtttagtaaggtagcccactatag
tatgacattcatggtaaagcaaagctctaggggaagagacaggcatccca
tatctcttttctgggtggtatcctatacaatgactttaaacctctcaaag
ggcatcctttaaaggtttccagcccctcctatttccaagctgttaataaa
gcctttatttgacacatgttttgacacatgtgttggagggacattccatc
cccaaaactataacataaagctataataataaaagagacagtacagcagg
cacaacatgacaaatgcatccacagaatgccctagattatccagggagag
atctgcacatatattatcacatattgtagacaaactgtaaagtgatccca
gagagatagtcttccctacaaagttgattacatcattagacctcagcatg
ctactattaagtagtcaattgattctagtccatcggccctataaacttaa
gcataaaaatggtacataagaataaaacctaaagttataattctcttaga
aaagaaagtatcaaaagtttttatttaccttagcaatggcataaaaataa
aaatccataaagaaaaaaatagataaattgatgtttatcaaaattataaa
acaactacctttcaatgacactcctgttacaagaatatcaagacaaagta
ctaactacaagagaacacttgcaacacagattttgataaaagacttgtat
cagaatgcacaatgaactctcaaaactcaataataagaaacaaaataatg
aaaaatagcaagatactgaagccaacaattcagcaaaatgatatatgaaa
tgcagagagcacattctgggcgctcagcctcattagctgttgaagaaatg
caatttaagccacatgagatagtgttacacgtaaactagaatgcctaaat
taaaaatatgacatccaataacaaatgacagtggaggctatagcgcacga
agctctctcatatactgctgaactgtgaaacgtcattcactttgggccca
cgtttgctgcctctgaaggcaaccttaatgttgtggagtgatgcatgtag
tcgttgtatgcatag
gaattcaatggccacctgtcaagggacacatcatgatggacaatacagac
cctcactatttgctttgtctctgcccttcagaccctgtgtatcattctga
ggccccaggttgtgatggagattaatattggagagtaggagagatcacca
ccaaaaatgtttttaaacatattctgctcttgttcagcagcaagcttcag
gcaggctacagtgccacgtgtagccctgccttctctgtgtcccctaagat
gctgccatgaccactagggtttcctgatagaggtttccctcttagggtac
agagaagggattccattcacctccctgaatttctcctgaagctgtgagct
gtataaatggcaaggcttcccttgccataaacaaacaaacaaacaaacaa
acaaacaaacaaacaaaagagtccaaaacaagtagacaaacagacaagat
agaactctgatgtgaggttctcatctattttcatgttgttctgcagaatg
ttcaataaaaatggctttaaggttttaatacttgaaacattaagatacct
ctcccccacaggaagaaaaacactttattgagtacaatggggaagggagg
agggctgggaaggagcggaggtatcactgccatggtttctcgtatagagc
tgtgactgaggggtaaaatcatggacaaaaaattatttttatatgataac
agaaggagatgaaagaagaatgcaggagcctggagggtgggggaggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_5454799_5455545
seq2: B6Ng01-258J17.g_65_813

seq1  GAATTCAATGGCCACCTGTCAAGGGACACATCATGATGGACAATACAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGCCACCTGTCAAGGGACACATCATGATGGACAATACAGAC  50

seq1  CCTCACTATTTGCTTTGTCTCTGCCCTTCAGACCCTGTGTATCATTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTATTTGCTTTGTCTCTGCCCTTCAGACCCTGTGTATCATTCTGA  100

seq1  GGCCCCAGGTTGTGATGGAGATTAATATTGGAGAGTAGGAGAGATCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAGGTTGTGATGGAGATTAATATTGGAGAGTAGGAGAGATCACCA  150

seq1  CCAAAAATGTTTTTAAACATATTCTGCTCTTGTTCAGCAGCAAGCTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATGTTTTTAAACATATTCTGCTCTTGTTCAGCAGCAAGCTTCAG  200

seq1  GCAGGCTACAGTGCCACGTGTAGCCCTGCCTTCTCTGTGTCCCCTAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTACAGTGCCACGTGTAGCCCTGCCTTCTCTGTGTCCCCTAAGAT  250

seq1  GCTGCCATGACCACTAGGGTTTCCTGATAGAGGTTTCCCTCTTAGGGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATGACCACTAGGGTTTCCTGATAGAGGTTTCCCTCTTAGGGTAC  300

seq1  AGAGAAGGGATTCCATTCACCTCCCTGAATTTCTCCTGAAGCTGTGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGGATTCCATTCACCTCCCTGAATTTCTCCTGAAGCTGTGAGCT  350

seq1  GTATAAATGGCAAGGCTTCCCTTGCCATAAACAAACAAACAAACAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATGGCAAGGCTTCCCTTGCCATAAACAAACAAACAAACAAACAA  400

seq1  ACAAACAAACAAACAAAAGAGTCCAAAACAAGTAGACAAACAGACAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAAAGAGTCCAAAACAAGTAGACAAACAGACAAGAT  450

seq1  AGAACTCTGATGTGAGGTTCTCATCTATTTTCATGTTGTTCTGCAGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTGATGTGAGGTTCTCATCTATTTTCATGTTGTTCTGCAGAATG  500

seq1  TTCAATAAAAATGGCTTTAAGGTTTTAATACTTGAAACATTAAGATACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAAAAATGGCTTTAAGGTTTTAATACTTGAAACATTAAGATACCT  550

seq1  CTCCCCCACAGGAAGAAAAACACTTTATTGAGTACAATGGGGAAGGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCACAGGAAGAAAAACACTTTATTGAGTACAATGGGGAAGGGAGG  600

seq1  AGGGCTGGGAAGGAGCGGAGGTATCACTGCCATGGTTTCTCGTATAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGGAAGGAGCGGAGGTATCACTGCCATGGTTTCTCGTATAGAGC  650

seq1  TGTGACTGAGGGGTAAAATCATGGACAAAAAATTA-TTTTATATGATAAC  699
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTGACTGAGGGGTAAAATCATGGACAAAAAATTATTTTTATATGATAAC  700

seq1  AGAAGGAGATGAAAGAAGAATGCAGGAG-CTGGAGGGTGGGGGAGGGGC  747
      |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAAGGAGATGAAAGAAGAATGCAGGAGCCTGGAGGGTGGGGGAGGGGC  749