BAC Information

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BAC

Clone NameB6Ng01-259H09
Chromosome12 (Build37)
Map Location 67,763,116 - 67,919,120
singlet/doubletdoublet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream geneLOC100040745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259H09.bB6Ng01-259H09.g
ACCGA064636GA064637
length1,2011,127
definitionB6Ng01-259H09.b B6Ng01-259H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,917,938 - 67,919,120)(67,763,116 - 67,764,247)
sequence
gaattctttttaccatttgatatggctttatcctacctgcattaacatac
ttaatgcagtagtagtagtctatgtcagttctaaaactctgcagttttgt
ggtgacctactttgtagtatgtaacatctgtcatgtttttaatatatgta
atgtgtgtgtgtgtgttattttgtatgtttttttctgcctgaatttactg
ttttcttacttattggtgtttattttagtacaatccaatgctcctatatt
taaattcaatacaatatataaattggtacacaaaagttgccttttgttat
ttcccccaacatcagctaccctattcaaaataacaccccgtattggcgag
aggaatggggaaatcactgtccatattctgcaatgtaaatggactctact
tcattttaaaaagtatacagaaagagataagcatttaaatgtaatgaagg
tcatcatattatggatgccttgtagaatggatttttatctaattcatatt
ggtgttgtcagcagagctgtattactaggaatccattcaatccaacgatg
cctttgttaatatttactacatttgaggcacagttgtttgagtaagacaa
acaagaaacaagagtattgttgtaatgagtctagtatttatcagggcaaa
aataatgtcttctaggaccaattcttttgaagtagtggttgagatgataa
ttcaaatgttactgattttattaaggatttgatcttaggaaatatgctag
tagggaggcaagaaatgctcagaagaaaggcagatgagaatataattgca
ggatatacccgccaactaattcaataagataaattagacattgaggccct
ttccaaccagaagaggaaaggcagcagttttcatgtcccacaataatcat
ttcttttgcaaaataaaataaaaaattaaaataagttgaatagtgactcc
ctaagattagcatattctaattttcccttgaccagtcaagtgacccccat
aactgacacagagagctaagggtaggaagggacaggggtcctcagagagc
caggcaagccccatattatctgcttcatgtccattgatgacacctctgag
aatgccagattgccttaagcagctcaagattattgaaatttgatgaactt
tattataaggtgtatttcttgatgaatccgaggtcattaactgggccatt
c

gaattcagcataaggtgtctgttttcattttgattttactaccttgcact
cttgagatatgcagggaaatgagagagaagaagagacaggattacacaga
ggtgatgatccaacaatttaaaatcatcagtatctactaatacaaggtta
ttggtgagaaaaaactaacacagaaaccctaattccagtggaaattctgt
tgtgtgtatatcatcagtgtataccgccatcatgagacttcggagacata
acttcaggccagtgtgctctttacatctgtaagggctcagcagataaaca
atttcaatgacagatggaagatgaagaaaaaagagacatacacgaacact
tagaaattctgcttcaaaaagttaatcatggttgtgttaagaaaacaaag
gtaaacatatgacttttaagtagagaattttttgtggagaactgctcaaa
gctttgaacatgctcacatgcttgttaccacattcttggaggttaattgt
atgtattaaagttctgactctttgtggaaatttttctaagtcacgtgctc
cagaaaattaagtgaggaaattatcagctacactatgactcatggaagca
ttttgaaaatgtattgtattcctgatgactaatttccattaaagggatca
caaactaagcaacaagaatggcagtctagggaaaattaaatttatgataa
aaatgaaagccggaacacaaaaaattttgactttttatgtcaagtatcaa
atgatacactgacgttatccaatgtagttcagatctatctaaaaaacttg
tttgaagaaaaattgtctttctcattatcaactatttttcaacagctcca
tctcttttgattcttaaggcatacattctataacatactgtataaactta
aattacttcttcttcaaaaaatttaagatagatttttaagcatgatgctt
tcctaaatcaatgattagcatagtttttacaaaacatttaaatttttttt
agtttgcttatacttttaaaatgtaaatgtcagaataatatagcacattt
acagaaatgatatttatagttaggttgtaaagtatagagttgatcactgt
gttaggtcttatcttaagttctggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_67917938_67919120
seq2: B6Ng01-259H09.b_40_1240 (reverse)

seq1  GAATG--CCAGTTAATGCCCTCTGATCCTTC-AGAAAT-CACTTTATATA  46
      |||||  |||||||||| |||| ||| | || |||||| ||| |||||  
seq2  GAATGGCCCAGTTAATGACCTCGGATTCATCAAGAAATACACCTTATAAT  50

seq1  AAAGTTCTTC-ATTTTCTAT-ATCTT-TGCTGCTTTA-GCATCCTGCCTT  92
      ||||||| || | |||| || |||||  ||||||| | |||  ||| | |
seq2  AAAGTTCATCAAATTTCAATAATCTTGAGCTGCTTAAGGCAATCTGGCAT  100

seq1  TCTCAGAGTGTTCATC-ATTGACATGAAGCAGATAATAT-GGGCTTGCCT  140
      ||||||||   ||||| || ||||||||||||||||||| ||||||||||
seq2  TCTCAGAGGTGTCATCAATGGACATGAAGCAGATAATATGGGGCTTGCCT  150

seq1  GCTTCTCTGA-GACCCCTGTCCCTTCCTACCCTTAGCTCTCTGTGTCAGT  189
      |  ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTGAGGACCCCTGTCCCTTCCTACCCTTAGCTCTCTGTGTCAGT  200

seq1  TAT-GGGGTCACTTGACT-GTCAAGGG-AAATTAGAATATTGCTAATCTT  236
      ||| |||||||||||||| |||||||| ||||||||||| ||||||||||
seq2  TATGGGGGTCACTTGACTGGTCAAGGGAAAATTAGAATA-TGCTAATCTT  249

seq1  A-GGAGTCACTATTCAACTTATTTT-ATTTTTTATTTTATTTTGC-AAAG  283
      | ||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  AGGGAGTCACTATTCAACTTATTTTAATTTTTTATTTTATTTTGCAAAAG  299

seq1  AAATGATTATTGTGGGACATG-AAACTGCTGCC-TTCCTCTTCTGGTTGG  331
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  AAATGATTATTGTGGGACATGAAAACTGCTGCCTTTCCTCTTCTGGTTGG  349

seq1  AAAGGGCCTCAATGTCTAATTTATCTTATTGAATTAGTTGGCGGGTATAT  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCCTCAATGTCTAATTTATCTTATTGAATTAGTTGGCGGGTATAT  399

seq1  CCTGCAATTATATTCTCATCTGCCTTTCTTCTGAGCATTTCTTGCCTCCC  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAATTATATTCTCATCTGCCTTTCTTCTGAGCATTTCTTGCCTCCC  449

seq1  TACTAGCATATTTCCTAAGATCAAATCCTTAATAAAATCAGTAACATTTG  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCATATTTCCTAAGATCAAATCCTTAATAAAATCAGTAACATTTG  499

seq1  AATTATCATCTCAACCACTACTTCAAAAGAATTGGTCCTAGAAGACATTA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCATCTCAACCACTACTTCAAAAGAATTGGTCCTAGAAGACATTA  549

seq1  TTTTTGCCCTGATAAATACTAGACTCATTACAACAATACTCTTGTTTCTT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCCTGATAAATACTAGACTCATTACAACAATACTCTTGTTTCTT  599

seq1  GTTTGTCTTACTCAAACAACTGTGCCTCAAATGTAGTAAATATTAACAAA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTTACTCAAACAACTGTGCCTCAAATGTAGTAAATATTAACAAA  649

seq1  GGCATCGTTGGATTGAATGGATTCCTAGTAATACAGCTCTGCTGACAACA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCGTTGGATTGAATGGATTCCTAGTAATACAGCTCTGCTGACAACA  699

seq1  CCAATATGAATTAGATAAAAATCCATTCTACAAGGCATCCATAATATGAT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATGAATTAGATAAAAATCCATTCTACAAGGCATCCATAATATGAT  749

seq1  GACCTTCATTACATTTAAATGCTTATCTCTTTCTGTATACTTTTTAAAAT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCATTACATTTAAATGCTTATCTCTTTCTGTATACTTTTTAAAAT  799

seq1  GAAGTAGAGTCCATTTACATTGCAGAATATGGACAGTGATTTCCCCATTC  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAGTCCATTTACATTGCAGAATATGGACAGTGATTTCCCCATTC  849

seq1  CTCTCGCCAATACGGGGTGTTATTTTGAATAGGGTAGCTGATGTTGGGGG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGCCAATACGGGGTGTTATTTTGAATAGGGTAGCTGATGTTGGGGG  899

seq1  AAATAACAAAAGGCAACTTTTGTGTACCAATTTATATATTGTATTGAATT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAAAAGGCAACTTTTGTGTACCAATTTATATATTGTATTGAATT  949

seq1  TAAATATAGGAGCATTGGATTGTACTAAAATAAACACCAATAAGTAAGAA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAGGAGCATTGGATTGTACTAAAATAAACACCAATAAGTAAGAA  999

seq1  AACAGTAAATTCAGGCAGAAAAAAACATACAAAATAACACACACACACAC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAAATTCAGGCAGAAAAAAACATACAAAATAACACACACACACAC  1049

seq1  ATTACATATATTAAAAACATGACAGATGTTACATACTACAAAGTAGGTCA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATATATTAAAAACATGACAGATGTTACATACTACAAAGTAGGTCA  1099

seq1  CCACAAAACTGCAGAGTTTTAGAACTGACATAGACTACTACTACTGCATT  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAACTGCAGAGTTTTAGAACTGACATAGACTACTACTACTGCATT  1149

seq1  AAGTATGTTAATGCAGGTAGGATAAAGCCATATCAAATGGTAAAAAGAAT  1181
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGTTAATGCAGGTAGGATAAAGCCATATCAAATGGTAAAAAGAAT  1199

seq1  TC  1183
      ||
seq2  TC  1201


seq1: chr12_67763116_67764247
seq2: B6Ng01-259H09.g_63_1189

seq1  GAATTCAGCATAAGGTGTCTGTTTTCATTTTGATTTTACTACCTTGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAAGGTGTCTGTTTTCATTTTGATTTTACTACCTTGCACT  50

seq1  CTTGAGATATGCAGGGAAATGAGAGAGAAGAAGAGACAGGATTACACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGATATGCAGGGAAATGAGAGAGAAGAAGAGACAGGATTACACAGA  100

seq1  GGTGATGATCCAACAATTTAAAATCATCAGTATCTACTAATACAAGGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGATCCAACAATTTAAAATCATCAGTATCTACTAATACAAGGTTA  150

seq1  TTGGTGAGAAAAAACTAACACAGAAACCCTAATTCCAGTGGAAATTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAGAAAAAACTAACACAGAAACCCTAATTCCAGTGGAAATTCTGT  200

seq1  TGTGTGTATATCATCAGTGTATACCGCCATCATGAGACTTCGGAGACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATATCATCAGTGTATACCGCCATCATGAGACTTCGGAGACATA  250

seq1  ACTTCAGGCCAGTGTGCTCTTTACATCTGTAAGGGCTCAGCAGATAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGGCCAGTGTGCTCTTTACATCTGTAAGGGCTCAGCAGATAAACA  300

seq1  ATTTCAATGACAGATGGAAGATGAAGAAAAAAGAGACATACACGAACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATGACAGATGGAAGATGAAGAAAAAAGAGACATACACGAACACT  350

seq1  TAGAAATTCTGCTTCAAAAAGTTAATCATGGTTGTGTTAAGAAAACAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTCTGCTTCAAAAAGTTAATCATGGTTGTGTTAAGAAAACAAAG  400

seq1  GTAAACATATGACTTTTAAGTAGAGAATTTTTTGTGGAGAACTGCTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACATATGACTTTTAAGTAGAGAATTTTTTGTGGAGAACTGCTCAAA  450

seq1  GCTTTGAACATGCTCACATGCTTGTTACCACATTCTTGGAGGTTAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAACATGCTCACATGCTTGTTACCACATTCTTGGAGGTTAATTGT  500

seq1  ATGTATTAAAGTTCTGACTCTTTGTGGAAATTTTTCTAAGTCACGTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTAAAGTTCTGACTCTTTGTGGAAATTTTTCTAAGTCACGTGCTC  550

seq1  CAGAAAATTAAGTGAGGAAATTATCAGCTACACTATGACTCATGGAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATTAAGTGAGGAAATTATCAGCTACACTATGACTCATGGAAGCA  600

seq1  TTTTGAAAATGTATTGTATTCCTGATGACTAATTTCCATTAAAGGGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAATGTATTGTATTCCTGATGACTAATTTCCATTAAAGGGATCA  650

seq1  CAAACTAAGCAACAAGAATGGCAGTCTAGGGAAAATTAAATTTATGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAAGCAACAAGAATGGCAGTCTAGGGAAAATTAAATTTATGATAA  700

seq1  AAATGAAAGCCGGAACACAAAAAATTTTGACTTTTTATGTCAAGTATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAGCCGGAACACAAAAAATTTTGACTTTTTATGTCAAGTATCAA  750

seq1  ATGATACACTGACGTTATCCAATGTAGTTCAGATCTATCTAAAAAACTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACACTGACGTTATCCAATGTAGTTCAGATCTATCTAAAAAACTTG  800

seq1  TTTGAAGAAAAATTGTCTTTCTCATTATCAACTATTTTTCAACAGCTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAAAAATTGTCTTTCTCATTATCAACTATTTTTCAACAGCTCCA  850

seq1  TCTCTTTTGATTCTTAAGGCATACATTCTATAACATACTGTATAAACTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTGATTCTTAAGGCATACATTCTATAACATACTGTATAAACTTA  900

seq1  AATTACTTCTTCTTCAAAAAATTTAAGATAGATTTTTAAGCATGATGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTCTTCTTCAAAAAATTTAAGATAGATTTTTAAGCATGATGCTT  950

seq1  TCCTAAATCAATGATTAGCAATAGTTTTTAACAAAACA-TTAAATTTTTT  999
      ||||||||||||||||||| ||||||||| |||||||| |||||||||||
seq2  TCCTAAATCAATGATTAGC-ATAGTTTTT-ACAAAACATTTAAATTTTTT  998

seq1  TTAGTTTGCTTATACTTTTAAAATGTAAATGTCAGAATATATA-AGCAAC  1048
      ||||||||||||||||||||||||||||||||||||||| ||| ||| ||
seq2  TTAGTTTGCTTATACTTTTAAAATGTAAATGTCAGAATA-ATATAGC-AC  1046

seq1  ATTAACAAGAAATGATA-TTATAGT--AGTTGTAAAGGTATAAGAGTTGA  1095
      ||| || |||||||||| |||||||   |||||||| |||| ||||||| 
seq2  ATTTAC-AGAAATGATATTTATAGTTAGGTTGTAAA-GTAT-AGAGTTG-  1092

seq1  ATCACTGTGGTAAGTC-TATCTTAATTTCTTGAGGAAG  1132
      ||||||||| || ||| |||||||| ||||   |||||
seq2  ATCACTGTGTTAGGTCTTATCTTAAGTTCT---GGAAG  1127


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