BAC Information

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BAC

Clone NameB6Ng01-260B01
Chromosome12 (Build37)
Map Location 41,188,184 - 41,294,451
singlet/doubletdoublet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260B01.bB6Ng01-260B01.g
ACCGA065084GA065085
length1,149938
definitionB6Ng01-260B01.b B6Ng01-260B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,293,292 - 41,294,451)(41,188,184 - 41,189,112)
sequence
gaattcattccctaacaatgtaacaaataaccagtgtctccaaaggacta
gacggaaagtgcataaggtaaacagtagccattcaagtgcccaaagcccg
gcatccacccaactacatcaccttctctgagagcaagaaaacttttcagg
cacaggcttatgggaacagctgacagcaaatggctcgctgtacagcattc
ctcataaccatgttgcaggagggaaagacaatgtgttctatataactttt
attgttttgaaaataagagcactggttgcaatatgatttggacttaacca
cagtccatggcagaactttactccaaatgcatctagcactcctatccatc
cccaggcctgacaagaattaggacagctattacacagcgcttttctactg
ctcccaacgtttattgcattctccctctgtctgtctttctcctgcgtagc
agtctttagtatttcggtgtcacaaacttcttcctcatgtacttgcacta
aatattcaaaaacacctggtaaaggttgactgaagagaagcaaaaatggg
tgagggagagagggaagaaaagaaggggagagaaacaaagagaaaaacga
agaaaagaagcatagaaaagaggatttatctagtaccaataaggtcaaca
atatgaaaaattgacatttaactacccctgatttaaactgcaaatcttta
cccgtctcatgactcttgttctagctgaaatgatgctgcttccataggaa
agccacctacattactgtaagtatggcacctacattactgtaagtatggc
acctacattactgtaagtatggcacctcacatcgtcctcaggcttttcca
aaggactgctgatgatctcttagatatcttctaattagtcaatttaattt
ttcctacaattcttagactcttgcttgcctgtcactggcctcagagaaaa
agttacaaggacgatagctttggaaagtggtggtggatggcagctggtta
catttgtctctgtcaaaaatgcctagatctcatctctagattaggtaaat
ggtagggcaataaatctcagatagccacgtttctacgtgtctatgtcctc
tatggcctcactctcctgttctgtctctggtctctgtgtcacccctctc

gaattctcactctatgaatgaccaaaacaaaatgcagaaatacctggcat
gcaaaaacaaacaaacaaacaaacaaataacaaacaaattaacacaagag
cacacctaacttcactgattgatcagctcacgttttgccaagtcagtgta
aaagtgtgaatttcctaggagcaaatgttttgtgaattttctgttttagg
attctataaagggtttatccaaacaagaagtttcttagcaaagtcagagt
ttgaaagccactgactttgtcagaatactttgaagcaatattggaatatt
acagataaaaattctaaattctgtctaggaagctcttaaagaaccatgtt
tctcctgatgaaccgacctcaggagctggtagagaaatattttggtttgg
ggggaggggtgcattttcatggaatttctctattttccagaacacacagt
atgtgccatagttggcaccgtgacatactaaaatcatttgtgtctgggaa
acatacatgtgatccctttgttctgtgtatgacccattttcggaggctaa
tgagagtttatcccgtgaaaggaaaagtctggggttctaatttcggttcc
ttcataataatggtggacctcgggcaaagcatttatcttcttaggcctca
gccagaaaatgagagagttgcatgaggtgatttctatgttctcctcagat
tctaggggcaggccgacagcatgccagaggaatgtctggagtagtccatg
tatagtgtttttgttttcggggatgagaggcatggtggatgagatgtttt
tctgtttgggccagtctcttctacctgacagtttgctacaattgcacaaa
acttgcttggctttgacttctgggggcaatcctaaaaaagttttggcctg
tgaattttaggaatttgattacgtactttataagactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41293292_41294451
seq2: B6Ng01-260B01.b_45_1193 (reverse)

seq1  GAGAGAGGTGACACAGAGACACAAGAGACAG-ACA-GAGAGTGAGG-CAT  47
      ||||| ||||||||||||  || |||||||| ||| |||||||||| |||
seq2  GAGAGGGGTGACACAGAG--ACCAGAGACAGAACAGGAGAGTGAGGCCAT  48

seq1  AAGAGACATAAGAAACACGTAGAAAACGGTGCTATCTGAGATTTAATTGC  97
      |   |||||   | |||||||| |||||  |||||||||||||| |||||
seq2  AGAGGACAT---AGACACGTAG-AAACGTGGCTATCTGAGATTT-ATTGC  93

seq1  CCTAACCCATTTACCTAATCTTAGAGATGAGATTCTAGGCATTTTTGACA  147
      ||||  |||||||||||||| ||||||||||| |||||||||||||||||
seq2  CCTA--CCATTTACCTAATC-TAGAGATGAGA-TCTAGGCATTTTTGACA  139

seq1  GGAGACAAATGTAACCAGCTGCCATCCACCACACCTTTCCAAAGCTATCG  197
       |||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  -GAGACAAATGTAACCAGCTGCCATCCACCACCACTTTCCAAAGCTATCG  188

seq1  TCCTTGTAACTTTTTCTCCTGAGGCCAGTGACAGGCAAGCAAGAGTCTAA  247
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCTTGTAACTTTTTCT-CTGAGGCCAGTGACAGGCAAGCAAGAGTCTAA  237

seq1  GAATTTGTAGGAAAAATTAAATTGACTAATTAGAAGATATCTAAGAGATC  297
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAA-TTGTAGGAAAAATTAAATTGACTAATTAGAAGATATCTAAGAGATC  286

seq1  ATCAGCAGTCCTTTGGAAAAGCCTGAGGACGATGTGAGGTGCCATACTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGTCCTTTGGAAAAGCCTGAGGACGATGTGAGGTGCCATACTTA  336

seq1  CAGTAATGTAGGTGCCATACTTACAGTAATGTAGGTGCCATACTTACAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATGTAGGTGCCATACTTACAGTAATGTAGGTGCCATACTTACAGT  386

seq1  AATGTAGGTGGCTTTCCTATGGAAGCAGCATCATTTCAGCTAGAACAAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGGTGGCTTTCCTATGGAAGCAGCATCATTTCAGCTAGAACAAGA  436

seq1  GTCATGAGACGGGTAAAGATTTGCAGTTTAAATCAGGGGTAGTTAAATGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGAGACGGGTAAAGATTTGCAGTTTAAATCAGGGGTAGTTAAATGT  486

seq1  CAATTTTTCATATTGTTGACCTTATTGGTACTAGATAAATCCTCTTTTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTCATATTGTTGACCTTATTGGTACTAGATAAATCCTCTTTTCT  536

seq1  ATGCTTCTTTTCTTCGTTTTTCTCTTTGTTTCTCTCCCCTTCTTTTCTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCTTTTCTTCGTTTTTCTCTTTGTTTCTCTCCCCTTCTTTTCTTC  586

seq1  CCTCTCTCCCTCACCCATTTTTGCTTCTCTTCAGTCAACCTTTACCAGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCCCTCACCCATTTTTGCTTCTCTTCAGTCAACCTTTACCAGGT  636

seq1  GTTTTTGAATATTTAGTGCAAGTACATGAGGAAGAAGTTTGTGACACCGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAATATTTAGTGCAAGTACATGAGGAAGAAGTTTGTGACACCGA  686

seq1  AATACTAAAGACTGCTACGCAGGAGAAAGACAGACAGAGGGAGAATGCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAAAGACTGCTACGCAGGAGAAAGACAGACAGAGGGAGAATGCAA  736

seq1  TAAACGTTGGGAGCAGTAGAAAAGCGCTGTGTAATAGCTGTCCTAATTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGTTGGGAGCAGTAGAAAAGCGCTGTGTAATAGCTGTCCTAATTCT  786

seq1  TGTCAGGCCTGGGGATGGATAGGAGTGCTAGATGCATTTGGAGTAAAGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGCCTGGGGATGGATAGGAGTGCTAGATGCATTTGGAGTAAAGTT  836

seq1  CTGCCATGGACTGTGGTTAAGTCCAAATCATATTGCAACCAGTGCTCTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGGACTGTGGTTAAGTCCAAATCATATTGCAACCAGTGCTCTTA  886

seq1  TTTTCAAAACAATAAAAGTTATATAGAACACATTGTCTTTCCCTCCTGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAACAATAAAAGTTATATAGAACACATTGTCTTTCCCTCCTGCA  936

seq1  ACATGGTTATGAGGAATGCTGTACAGCGAGCCATTTGCTGTCAGCTGTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTATGAGGAATGCTGTACAGCGAGCCATTTGCTGTCAGCTGTTC  986

seq1  CCATAAGCCTGTGCCTGAAAAGTTTTCTTGCTCTCAGAGAAGGTGATGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGCCTGTGCCTGAAAAGTTTTCTTGCTCTCAGAGAAGGTGATGTA  1036

seq1  GTTGGGTGGATGCCGGGCTTTGGGCACTTGAATGGCTACTGTTTACCTTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTGGATGCCGGGCTTTGGGCACTTGAATGGCTACTGTTTACCTTA  1086

seq1  TGCACTTTCCGTCTAGTCCTTTGGAGACACTGGTTATTTGTTACATTGTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTTCCGTCTAGTCCTTTGGAGACACTGGTTATTTGTTACATTGTT  1136

seq1  AGGGAATGAATTC  1160
      |||||||||||||
seq2  AGGGAATGAATTC  1149


seq1: chr12_41188184_41189112
seq2: B6Ng01-260B01.g_67_1004

seq1  GAATTCTCACTCTATGAATGACCAAAACAAAATGCAGAAATACCTGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTCTATGAATGACCAAAACAAAATGCAGAAATACCTGGCAT  50

seq1  GCAAAAACAAACAAACAAACAAACAAATAACAAACAAATTAACACAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAACAAACAAACAAACAAACAAATAACAAACAAATTAACACAAGAG  100

seq1  CACACCTAACTTCACTGATTGATCAGCTCACGTTTTGCCAAGTCAGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTAACTTCACTGATTGATCAGCTCACGTTTTGCCAAGTCAGTGTA  150

seq1  AAAGTGTGAATTTCCTAGGAGCAAATGTTTTGTGAATTTTCTGTTTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTGAATTTCCTAGGAGCAAATGTTTTGTGAATTTTCTGTTTTAGG  200

seq1  ATTCTATAAAGGGTTTATCCAAACAAGAAGTTTCTTAGCAAAGTCAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATAAAGGGTTTATCCAAACAAGAAGTTTCTTAGCAAAGTCAGAGT  250

seq1  TTGAAAGCCACTGACTTTGTCAGAATACTTTGAAGCAATATTGGAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCCACTGACTTTGTCAGAATACTTTGAAGCAATATTGGAATATT  300

seq1  ACAGATAAAAATTCTAAATTCTGTCTAGGAAGCTCTTAAAGAACCATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAAAAATTCTAAATTCTGTCTAGGAAGCTCTTAAAGAACCATGTT  350

seq1  TCTCCTGATGAACCGACCTCAGGAGCTGGTAGAGAAATATTTTGGTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGATGAACCGACCTCAGGAGCTGGTAGAGAAATATTTTGGTTTGG  400

seq1  GGGGAGGGGTGCATTTTCATGGAATTTCTCTATTTTCCAGAACACACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGGTGCATTTTCATGGAATTTCTCTATTTTCCAGAACACACAGT  450

seq1  ATGTGCCATAGTTGGCACCGTGACATACTAAAATCATTTGTGTCTGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCATAGTTGGCACCGTGACATACTAAAATCATTTGTGTCTGGGAA  500

seq1  ACATACATGTGATCCCTTTGTTCTGTGTATGACCCATTTTCGGAGGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGTGATCCCTTTGTTCTGTGTATGACCCATTTTCGGAGGCTAA  550

seq1  TGAGAGTTTATCCCGTGAAAGGAAAAGTCTGGGGTTCTAATTTCGGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTTATCCCGTGAAAGGAAAAGTCTGGGGTTCTAATTTCGGTTCC  600

seq1  TTCATAATAATGGTGGACCTCGGGCAAAGCATTTATCTTCTTAGGCCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATAATGGTGGACCTCGGGCAAAGCATTTATCTTCTTAGGCCTCA  650

seq1  GCCAGAAAATGAGAGAGTTGCATGAGGTGATTTCTATGTTCTCCTCAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAAATGAGAGAGTTGCATGAGGTGATTTCTATGTTCTCCTCAGAT  700

seq1  TCTAGGGGCAGGCCGACAGCATGCCAGAGGAATGTCTGGAGTAGTCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGGCAGGCCGACAGCATGCCAGAGGAATGTCTGGAGTAGTCCATG  750

seq1  TATAGTGTTTTTGTTTTCGGGGATGAGAGGCATGGTGGATGAGATG-TTT  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATAGTGTTTTTGTTTTCGGGGATGAGAGGCATGGTGGATGAGATGTTTT  800

seq1  TCTGTTTGGGCCAGTCTCTTCTACCTGACAG-TTGCTACAATTGCACAGA  848
      ||||||||||||||||||||||||||||||| |||||||||||||||| |
seq2  TCTGTTTGGGCCAGTCTCTTCTACCTGACAGTTTGCTACAATTGCACAAA  850

seq1  ACTTGC-TGGC-TTGACTTCT-GGGGCAATCCT-AAAGAGTTTGGGCCTG  894
      |||||| |||| ||||||||| ||||||||||| ||| ||||| ||||||
seq2  ACTTGCTTGGCTTTGACTTCTGGGGGCAATCCTAAAAAAGTTTTGGCCTG  900

seq1  TGAATTTTAGGAA-TTGA-TACGTACTATAT-AGACTC  929
      ||||||||||||| |||| |||||||| ||| ||||||
seq2  TGAATTTTAGGAATTTGATTACGTACTTTATAAGACTC  938


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