BAC Information

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BAC

Clone NameB6Ng01-260K07
Chromosome12 (Build37)
Map Location 54,912,112 - 55,070,143
singlet/doubletdoublet
Overlap geneNpas3
Upstream geneAkap6
Downstream geneEgln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260K07.bB6Ng01-260K07.g
ACCGA065514GA065515
length1,129234
definitionB6Ng01-260K07.b B6Ng01-260K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,912,112 - 54,913,254)(55,069,910 - 55,070,143)
sequence
gaattctttaaacaattcagatcttaccctaggcagctttggacatctgt
caacagagagctcaagtcatctgttgtcacaaagggacccatcacctaca
cttccacataagacctgtgagaattttttatcattactaccagagaacac
tgacaagtgtttggaaaagatggggagacctctgagaaaagcagcccatt
gctcctcaagacaaccttggcttgtttacttgaggcttagtcaaaatgta
gcttctttccctgagacctgagagaaggtaccttgagagataagacagaa
tgctggcatagtctccccgaaggccattgcgtacacaggaagtttggttt
ttatgctcttgtccatgcctgattgtggcactgccatactaattcctcca
aactctcaacatctgaccttggactggagaagggcagccatttctgaggc
aaagggcaagcatgccctcctccgcacgctcacctctgtgtgcttcgtac
agttttctctcatttttttgttccttttgttttgttgttgttgttggttt
gccttcaaaacaaaattttctaagttctgtgtgtttacttataagtaaac
aactcagctgcttttctgtcctctgtgtcaacaagaaaatccccaggttc
tgcgtttagcttgaataattaccaaactgtttgtaattacaatacgagga
tgtgacctcggagcattttttttttgtttcctttctatgtatttaataca
ttttagaagctgaaaataccaaatctcttgtctctgtctctgtctctgtc
tctctctctctttttcttttcttttcttttttctttttctttctttcttt
ctttctttctttttttttttttttttgatgcttatcagtagtggaaacgt
tgcaaaacaatcagcccgatgcccatgctttgttcgtttattgctttctc
tgaagataaattgactgtactcactctcttcagcatttttctccacctag
atattattcctgtgcagccacccccaaggtgactgttatcacttattaaa
tccttgcacgcttgggaagaaaaaacaacatgtccctaatacccagagcc
tatttttagccactagcttcctgttttat
tttcccctctgttatttggaatatatgagctatgcctctaaaccaggtca
ttagctgggccgtggataggttcatcgcctcacccacgggactgctcggc
gggtgctcccagctcccttccctgccttctacatttagaaagccctcttt
gactcagtagtaggctatgatttaataaccctgttctgctgacttcatag
gctgtagaacctcaggggtggaggggtggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_54912112_54913254
seq2: B6Ng01-260K07.b_45_1173

seq1  GAATTCTTTAAACAATTCAGATCTTACCCTAGGCAGCTTTGGACATCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAACAATTCAGATCTTACCCTAGGCAGCTTTGGACATCTGT  50

seq1  CAACAGAGAGCTCAAGTCATCTGTTGTCACAAAGGGACCCATCACCTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGAGCTCAAGTCATCTGTTGTCACAAAGGGACCCATCACCTACA  100

seq1  CTTCCACATAAGACCTGTGAGAATTTTTTATCATTACTACCAGAGAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACATAAGACCTGTGAGAATTTTTTATCATTACTACCAGAGAACAC  150

seq1  TGACAAGTGTTTGGAAAAGATGGGGAGACCTCTGAGAAAAGCAGCCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTGTTTGGAAAAGATGGGGAGACCTCTGAGAAAAGCAGCCCATT  200

seq1  GCTCCTCAAGACAACCTTGGCTTGTTTACTTGAGGCTTAGTCAAAATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCAAGACAACCTTGGCTTGTTTACTTGAGGCTTAGTCAAAATGTA  250

seq1  GCTTCTTTCCCTGAGACCTGAGAGAAGGTACCTTGAGAGATAAGACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTCCCTGAGACCTGAGAGAAGGTACCTTGAGAGATAAGACAGAA  300

seq1  TGCTGGCATAGTCTCCCCGAAGGCCATTGCGTACACAGGAAGTTTGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCATAGTCTCCCCGAAGGCCATTGCGTACACAGGAAGTTTGGTTT  350

seq1  TTATGCTCTTGTCCATGCCTGATTGTGGCACTGCCATACTAATTCCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTCTTGTCCATGCCTGATTGTGGCACTGCCATACTAATTCCTCCA  400

seq1  AACTCTCAACATCTGACCTTGGACTGGAGAAGGGCAGCCATTTCTGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCAACATCTGACCTTGGACTGGAGAAGGGCAGCCATTTCTGAGGC  450

seq1  AAAGGGCAAGCATGCCCTCCTCCGCACGCTCACCTCTGTGTGCTTCGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCAAGCATGCCCTCCTCCGCACGCTCACCTCTGTGTGCTTCGTAC  500

seq1  AGTTTTCTCTCATTTTTTTGTTCCTTTTGTTTTGTTGTTGTTGTTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTCTCATTTTTTTGTTCCTTTTGTTTTGTTGTTGTTGTTGGTTT  550

seq1  GCCTTCAAAACAAAATTTTCTAAGTTCTGTGTGTTTACTTATAAGTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAAAACAAAATTTTCTAAGTTCTGTGTGTTTACTTATAAGTAAAC  600

seq1  AACTCAGCTGCTTTTCTGTCCTCTGTGTCAACAAGAAAATCCCCAGGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGCTGCTTTTCTGTCCTCTGTGTCAACAAGAAAATCCCCAGGTTC  650

seq1  TGCGTTTAGCTTGAATAATTACCAAACTGTTTGTAATTACAATACGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTTAGCTTGAATAATTACCAAACTGTTTGTAATTACAATACGAGGA  700

seq1  TGTGACCTCGGAGCATTTTTTTTTTGTTTCCTTTCTATGTATTTAATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCTCGGAGCATTTTTTTTTTGTTTCCTTTCTATGTATTTAATACA  750

seq1  TTTTAGAAGCTGAAAATACCAAATCTCTTGTCTCTGTCTCTGTCTCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAGCTGAAAATACCAAATCTCTTGTCTCTGTCTCTGTCTCTGTC  800

seq1  TCTCTCTCTCTTTTTCTTTTCTTTTCTTTTTTCTTTTTCTTTCTTTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTTTTTCTTTTCTTTTCTTTTTTCTTTTTCTTTCTTTCTTT  850

seq1  CTTTCTTTTCTTTTTTTTTTTTTTTTTGATGCTTATCAGTAGTGGAAACG  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTC-TTTCTTTTTTTTTTTTTTTTTGATGCTTATCAGTAGTGGAAACG  899

seq1  TTGCAAAACAATCAGCCCGATGCCCATGCTTTGTTCGTTTATTGCTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAACAATCAGCCCGATGCCCATGCTTTGTTCGTTTATTGCTTTCT  949

seq1  CTGAAGATAAATTGACTGTACTCAACTCTCTTCAGCATTTTTCTCCACCT  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGAAGATAAATTGACTGTACTC-ACTCTCTTCAGCATTTTTCTCCACCT  998

seq1  AGATATTATTCCTTGTGCAGCCA-CCCCAAGGTGACTGTTATCACTTAAT  1049
      |||||||||||| |||||||||| ||||||||||||||||||||||| ||
seq2  AGATATTATTCC-TGTGCAGCCACCCCCAAGGTGACTGTTATCACTT-AT  1046

seq1  TAAATCCTTGCACGC-TGGGAAGAAAAAACAACATTGTCCCTTCATAACC  1098
      ||||||||||||||| |||||||||||||||||| |||||| | |||  |
seq2  TAAATCCTTGCACGCTTGGGAAGAAAAAACAACA-TGTCCC-TAATA--C  1092

seq1  CCAAGGAGCCTATTTTTAAGCCACTAAGCCTTTCCCCTGTTTTAT  1143
      |||  |||||||||||| ||||||||   |||   ||||||||||
seq2  CCA--GAGCCTATTTTT-AGCCACTA--GCTT---CCTGTTTTAT  1129

seq1: chr12_55069910_55070143
seq2: B6Ng01-260K07.g_71_304 (reverse)

seq1  CCACCCCACCCCTCCACCCCTGAGGTTCTACAGCCTATGAAGTCAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACCCCTCCACCCCTGAGGTTCTACAGCCTATGAAGTCAGCAGA  50

seq1  ACAGGGTTATTAAATCATAGCCTACTACTGAGTCAAAGAGGGCTTTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTATTAAATCATAGCCTACTACTGAGTCAAAGAGGGCTTTCTAA  100

seq1  ATGTAGAAGGCAGGGAAGGGAGCTGGGAGCACCCGCCGAGCAGTCCCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAGGCAGGGAAGGGAGCTGGGAGCACCCGCCGAGCAGTCCCGTG  150

seq1  GGTGAGGCGATGAACCTATCCACGGCCCAGCTAATGACCTGGTTTAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGCGATGAACCTATCCACGGCCCAGCTAATGACCTGGTTTAGAGG  200

seq1  CATAGCTCATATATTCCAAATAACAGAGGGGAAA  234
      ||||||||||||||||||||||||||||||||||
seq2  CATAGCTCATATATTCCAAATAACAGAGGGGAAA  234