BAC Information

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BAC

Clone NameB6Ng01-260M11
Chromosome12 (Build37)
Map Location 93,431,059 - 93,554,076
singlet/doubletdoublet
Overlap geneLOC628116
Upstream gene4930534B04Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260M11.bB6Ng01-260M11.g
ACCGA065617GA065618
length1,1181,137
definitionB6Ng01-260M11.b B6Ng01-260M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,552,957 - 93,554,076)(93,431,059 - 93,432,221)
sequence
gaattcatcaagacctgacacgtgtaaaggcatagaacttcaccaaagga
aaggcagctgtagaacgaggaaaagtaaaaaaaaaaagaggctttgtctg
accttaaccttgggagagaccctgtttattcactgtgagagggcacatgt
gtggatagccaacatgcctagagagaaagatgggatgccataccttatgg
agatagaaatccctcccttagtgtgcaagggaatctagggcatgttgtct
ttgagcaggaaactatcacttgtaatctgtttaaatcacaactgccttca
ccaaatttcccaaaatgaaaaatgtcccaaagtgttgctcagaagtagag
ctgagtctgacccagtgctgtccaggtctgaaaagaaatgcgtggcttat
tttgattttttttttgtgattagaaaaaaccagaaaggataaagtaacac
tcttgttattttctgtctcctcactggaactctctctgctcagaatttcc
tggtatctggtatacccactccattcaaaaaactgagacggcaaggcagt
taagagcatatgttcttcttgcagagggacccaaattcagttcctgacat
ccattgtaagactacctataattccaactccagaaaatccaacaccctct
tctgactttgacaagcatctcacagacatgcatataccacatgcaaacac
agaggtacatatgtacatgattaaaatttaaatctttttaaaatactgaa
gagactgggactgtactaaaacaagcaactttcttcagagcacagttata
cacagaaagagacagaaatgcaaagacaaaaacagagacagaaaaagaga
cagagaattgcatagacaagctatagtgaggttttgctcaactgcctttg
ttccttccttaagacaagttggcttctggtttcatatcacgaaacatgac
acaaagcactgtgttatgctttttattttattttttctctttgttttctg
cttttctaagtttactggcatgggaacatagatcctccctcatatagtgt
acattattggagttttttgttgttgttatctaacatttagtttcagtcaa
gatctaatccatggagca

gaattcttcactgtggagactcatggatttctttgcttctttctcatcct
acctaggccagtttatagaggtgaagctcttagagtcatcctctagggga
aaaaatatccacatccaagagttgttggaatggtttgagtaggaacctgc
atcaatcgttgttggtttcatattgcagaagtcacccaccagcaaagact
attttatacaagtgagaaatggaaatttatcttacttaagccatttgact
gtttgttctttgcaatcattaaatataatccgaactgaaactgcatgttc
ttgacatcccaaattagaaagataatgcctacacgcttgctttaaaagtg
tgcttatttttaaaaccctcactaattgtatgagatacatgattccaatt
ttcaacctcaagatccacatattttctttctttcttttttttttttttgt
gagaagtattttagttgcatttggaaagatggttctttgtgaaaccaaaa
gttctgtgttcagtctgagtgtctctaagttttcatcatttgactgcttt
aggtatgctctgtttatgtgaatttctacttttatcactggactaacatt
tcccatggttttagttactatgcatgtgcgtcatggcggctcccctctct
atctcattccttgtgacaggaccttttcctgacaatcatattcctcacag
tcacctcttggtgtgcttgttcactctgtccccatccaactggatctttc
ttgccccatcactcataaaaccgagttacaatagctataattctcttgca
atcagtcaattgctgcagttcacaaatggtttattagactgttaacctcc
attagctgaggagttaggtcattagctgcctctgataaccatttctcaag
gtttatgacttaaatgatcatttaataccgacgtttattctttcatgtgg
attgaaacaaagtttcaaaagacttaaactcaggggtaaaatgagtatat
tcattagatatcttataactagagcaccatttatcaagactgacatttgt
ttaactcggactctgggtgatgtccatactcagtttcaacatgcatcaga
tcctattctcagtgacacaagtggctttggattaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_93552957_93554076
seq2: B6Ng01-260M11.b_44_1161 (reverse)

seq1  TGCT-CATGGAATTAGATCTGAACTGAAACTAATTGTTTAGATTACAACA  49
      |||| ||||| |||||||||  ||||||||||| || |||||| ||||||
seq2  TGCTCCATGG-ATTAGATCTTGACTGAAACTAAATG-TTAGATAACAACA  48

seq1  ACAAAAAACT-CAATAATGTAACACTATATGAGG--AGATCTATGTTCCC  96
      |||||||||| ||||||||| |||||||||||||   |||||||||||||
seq2  ACAAAAAACTCCAATAATGT-ACACTATATGAGGGAGGATCTATGTTCCC  97

seq1  ATGCCAGTAAACTTAGAAAAGCAGAAAACAAAGAGAAAAAAATAAAAATA  146
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  ATGCCAGTAAACTTAGAAAAGCAGAAAACAAAGAGAAAAAA--TAAAATA  145

seq1  AAAAGCATAACACAGTGCTTTGTGTCATGTTTCGTTGATATGAAACCAGA  196
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAAGCATAACACAGTGCTTTGTGTCATGTTTCG-TGATATGAAACCAGA  194

seq1  AGCCAACTTGTCTTAAGGAAGGAACAAAGGCAGTTGAGCAAAACCTCACT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACTTGTCTTAAGGAAGGAACAAAGGCAGTTGAGCAAAACCTCACT  244

seq1  ATAGCTTGTCTATGCAATTCTCTGTCTCTTTTTCTGTCTCTGTTTTTGTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTGTCTATGCAATTCTCTGTCTCTTTTTCTGTCTCTGTTTTTGTC  294

seq1  TTTGCATTTCTGTCTCTTTCTGTGTATAACTGTGCTCTGAAGAAAGTTGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTCTGTCTCTTTCTGTGTATAACTGTGCTCTGAAGAAAGTTGC  344

seq1  TTGTTTTAGTACAGTCCCAGTCTCTTCAGTATTTTAAAAAGATTTAAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAGTACAGTCCCAGTCTCTTCAGTATTTTAAAAAGATTTAAATT  394

seq1  TTAATCATGTACATATGTACCTCTGTGTTTGCATGTGGTATATGCATGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATGTACATATGTACCTCTGTGTTTGCATGTGGTATATGCATGTC  444

seq1  TGTGAGATGCTTGTCAAAGTCAGAAGAGGGTGTTGGATTTTCTGGAGTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATGCTTGTCAAAGTCAGAAGAGGGTGTTGGATTTTCTGGAGTTG  494

seq1  GAATTATAGGTAGTCTTACAATGGATGTCAGGAACTGAATTTGGGTCCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATAGGTAGTCTTACAATGGATGTCAGGAACTGAATTTGGGTCCCT  544

seq1  CTGCAAGAAGAACATATGCTCTTAACTGCCTTGCCGTCTCAGTTTTTTGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGAAGAACATATGCTCTTAACTGCCTTGCCGTCTCAGTTTTTTGA  594

seq1  ATGGAGTGGGTATACCAGATACCAGGAAATTCTGAGCAGAGAGAGTTCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTGGGTATACCAGATACCAGGAAATTCTGAGCAGAGAGAGTTCCA  644

seq1  GTGAGGAGACAGAAAATAACAAGAGTGTTACTTTATCCTTTCTGGTTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAGACAGAAAATAACAAGAGTGTTACTTTATCCTTTCTGGTTTTT  694

seq1  TCTAATCACAAAAAAAAAATCAAAATAAGCCACGCATTTCTTTTCAGACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCACAAAAAAAAAATCAAAATAAGCCACGCATTTCTTTTCAGACC  744

seq1  TGGACAGCACTGGGTCAGACTCAGCTCTACTTCTGAGCAACACTTTGGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGCACTGGGTCAGACTCAGCTCTACTTCTGAGCAACACTTTGGGA  794

seq1  CATTTTTCATTTTGGGAAATTTGGTGAAGGCAGTTGTGATTTAAACAGAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCATTTTGGGAAATTTGGTGAAGGCAGTTGTGATTTAAACAGAT  844

seq1  TACAAGTGATAGTTTCCTGCTCAAAGACAACATGCCCTAGATTCCCTTGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTGATAGTTTCCTGCTCAAAGACAACATGCCCTAGATTCCCTTGC  894

seq1  ACACTAAGGGAGGGATTTCTATCTCCATAAGGTATGGCATCCCATCTTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAGGGAGGGATTTCTATCTCCATAAGGTATGGCATCCCATCTTTC  944

seq1  TCTCTAGGCATGTTGGCTATCCACACATGTGCCCTCTCACAGTGAATAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGGCATGTTGGCTATCCACACATGTGCCCTCTCACAGTGAATAAA  994

seq1  CAGGGTCTCTCCCAAGGTTAAGGTCAGACAAAGCCTCTTTTTTTTTTTAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTCTCCCAAGGTTAAGGTCAGACAAAGCCTCTTTTTTTTTTTAC  1044

seq1  TTTTCCTCGTTCTACAGCTGCCTTTCCTTTGGTGAAGTTCTATGCCTTTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCGTTCTACAGCTGCCTTTCCTTTGGTGAAGTTCTATGCCTTTA  1094

seq1  CACGTGTCAGGTCTTGATGAATTC  1120
      ||||||||||||||||||||||||
seq2  CACGTGTCAGGTCTTGATGAATTC  1118


seq1: chr12_93431059_93432221
seq2: B6Ng01-260M11.g_65_1201

seq1  GAATTCTTCACTGTGGAGACTCATGGATTTCTTTGCTTCTTTCTCATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACTGTGGAGACTCATGGATTTCTTTGCTTCTTTCTCATCCT  50

seq1  ACCTAGGCCAGTTTATAGAGGTGAAGCTCTTAGAGTCATCCTCTAGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGCCAGTTTATAGAGGTGAAGCTCTTAGAGTCATCCTCTAGGGGA  100

seq1  AAAAATATCCACATCCAAGAGTTGTTGGAATGGTTTGAGTAGGAACCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATCCACATCCAAGAGTTGTTGGAATGGTTTGAGTAGGAACCTGC  150

seq1  ATCAATCGTTGTTGGTTTCATATTGCAGAAGTCACCCACCAGCAAAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCGTTGTTGGTTTCATATTGCAGAAGTCACCCACCAGCAAAGACT  200

seq1  ATTTTATACAAGTGAGAAATGGAAATTTATCTTACTTAAGCCATTTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATACAAGTGAGAAATGGAAATTTATCTTACTTAAGCCATTTGACT  250

seq1  GTTTGTTCTTTGCAATCATTAAATATAATCCGAACTGAAACTGCATGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCTTTGCAATCATTAAATATAATCCGAACTGAAACTGCATGTTC  300

seq1  TTGACATCCCAAATTAGAAAGATAATGCCTACACGCTTGCTTTAAAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATCCCAAATTAGAAAGATAATGCCTACACGCTTGCTTTAAAAGTG  350

seq1  TGCTTATTTTTAAAACCCTCACTAATTGTATGAGATACATGATTCCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTTTTAAAACCCTCACTAATTGTATGAGATACATGATTCCAATT  400

seq1  TTCAACCTCAAGATCCACATATTTTCTTTCTTTCTTTTTTTTTTTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCTCAAGATCCACATATTTTCTTTCTTTCTTTTTTTTTTTTTTGT  450

seq1  GAGAAGTATTTTAGTTGCATTTGGAAAGATGGTTCTTTGTGAAACCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTATTTTAGTTGCATTTGGAAAGATGGTTCTTTGTGAAACCAAAA  500

seq1  GTTCTGTGTTCAGTCTGAGTGTCTCTAAGTTTTCATCATTTGACTGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGTTCAGTCTGAGTGTCTCTAAGTTTTCATCATTTGACTGCTTT  550

seq1  AGGTATGCTCTGTTTATGTGAATTTCTACTTTTATCACTGGACTAACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGCTCTGTTTATGTGAATTTCTACTTTTATCACTGGACTAACATT  600

seq1  TCCCATGGTTTTAGTTACTATGCATGTGCGTCATGGCGGCTCCCCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGGTTTTAGTTACTATGCATGTGCGTCATGGCGGCTCCCCTCTCT  650

seq1  ATCTCATTCCTTGTGACAGGACCTTTTCCTGACAATCATATTCCTCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTCCTTGTGACAGGACCTTTTCCTGACAATCATATTCCTCACAG  700

seq1  TCACCTCTTGGTGTGCTTGTTCACTCTGTCCCCATCCAACTGGATCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTTGGTGTGCTTGTTCACTCTGTCCCCATCCAACTGGATCTTTC  750

seq1  TTGCCCCATCACTCATAAAACCGAGTTACAATAGCTATAATTCTCTTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCATCACTCATAAAACCGAGTTACAATAGCTATAATTCTCTTGCA  800

seq1  ATCAGTCAATTGCTGCAGTTCACAAATGGTTTATTAGACTGTTAACCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCAATTGCTGCAGTTCACAAATGGTTTATTAGACTGTTAACCTCC  850

seq1  ATTAGCTGAGGAGTTAGGTCATTAGCTGCCTCTGATAACCATTTCTCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTGAGGAGTTAGGTCATTAGCTGCCTCTGATAACCATTTCTCAAG  900

seq1  GTTTATGACTTAAATGATCATTTAAATACCGACGTTTATTCTTTCATGTG  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTTTATGACTTAAATGATCATTT-AATACCGACGTTTATTCTTTCATGTG  949

seq1  GATTGAAACAAAGTTTCAAAAGAACTTAAAACTCAGGGGTAAAATGAGTA  1000
      |||||||||||||||||||||| |||| ||||||||||||||||||||| 
seq2  GATTGAAACAAAGTTTCAAAAG-ACTT-AAACTCAGGGGTAAAATGAGT-  996

seq1  ATATTCATTAAGAATATCTATAAACTTAGAGCACCAATTTAATTCAGGGA  1050
      ||||||||||   |||||| || |  ||||||||| |||||  ||| |  
seq2  ATATTCATTA--GATATCT-TATAACTAGAGCACC-ATTTA--TCAAG--  1038

seq1  CCTGACATTTGTTTTAAAACTTCCAGACTCT-GGTGATGTTCATACTCAG  1099
       |||||||||||||   ||||  | |||||| |||||||| |||||||||
seq2  ACTGACATTTGTTT---AACT--CGGACTCTGGGTGATGTCCATACTCAG  1083

seq1  TTTCAACCATGCATCAAGATCATATTCTCAGTGACAACAAAGGTTTGTCT  1149
      |||||| |||||||| ||||| ||||||||||||| ||||     || ||
seq2  TTTCAA-CATGCATC-AGATCCTATTCTCAGTGAC-ACAA----GTGGCT  1126

seq1  TTTGTGGATTAGGG  1163
      |   ||||||||||
seq2  T---TGGATTAGGG  1137


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