BAC Information

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BAC

Clone NameB6Ng01-261C08
Chromosome12 (Build37)
Map Location 10,176,290 - 10,177,495
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC633030, LOC100042238, Osr1, LOC382567
Downstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261C08.bB6Ng01-261C08.g
ACCGA065887GA065888
length1,1991,178
definitionB6Ng01-261C08.b B6Ng01-261C08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgccttcagctcaccaacattgctggttaaggaatttacaag
cagcactattataaatattcatgaatatttggtcacatgaataagttcct
tagtgaagtatttgtatataaaggaatgctttaaaatctatacacaaagg
tatgcaaaactcaccctcatttgttcagcatgagtgttagtacattcatt
cattcaggctgggacaatgatgcttcaagattgtccatctgttatataac
tattgttaaagagtactattctctaatgctacaatacttccttagcctgt
ttactcatgaaatgcccagaaagtcttccaacatcagtggtaggaaaatc
tgaaatttatgtatggtttaattttagaacactataaattggtttcaaaa
ttaccactgaacaatgccagccacactgacctatctcatttgtaatgttt
tcttttttccctttactttgtttaatgactttcagtatcacttgtacaaa
taacaggttttattattccatcttcatacatctgatgcactttgataatt
taatatcattccttaagcaagagagaacaaggtggagctcagttagcact
catatatcttcatggagactcagtactcatatatctgcatggagactcag
tactcatatatctgcatggagactcagtacacatatatctgcatggagac
tcaatactcatatatctgcatgagaactcagtactcatatatctgcatgg
agactcagtactcatatatctgcatggagactcaaacatatccaactgaa
tttacatcctcttgtgtgtttattatatacaaaatacttttcaaagcatt
gggtttaagaaacatagagtttgactgtttttgttttcttaattttctcc
atttgtataaccttaacattctgtgagacataggagcccgtgatggaaaa
cattttcaatataattcttaagatcgtgatgctccatgcatttacagaat
ttacatagtaaaaatgaccatcctatcaaaagcagtatacagattcacct
aatccccatcaaaatcccaaaacaattcttcaaagacatggaaagagcat
ctcaatcactggtaaagcaaaaaaccgaagaaagcaaacaactcttaaac
agttaagaaccttcggggatcccatctcttgactatactacggaacaat

gaattcacaatatgagacattttttctacatataaaattataaagtcatg
gagaaactaaaaatggaaaagttatagaagttttgaaagatggaaataga
ggaagagtgtaaacacacagactacatgaggaagcaagagctctaagtca
gctccccaggaaattacataatcatctaatctgcaccacagatcttcaca
agaggctcagacatcatcagcaccagctacctctggactagagaaggaat
gtaggaaccattgttgaaaacaggagtttgaatcaaattataacttaaaa
tcctattaaattatcaaaaatgtccttggagctgaagtatctcccatccc
tcctcaggacactggaactttaatctctaaagtgttagagatgttcgatg
gatgtagaatatcaggcatcttttaggagaaaacccttactgtcacctgg
gaaacgtaagcagtttgcatgttgaatgagctgctgaacaattctcccat
actctcctcagaaatctgggaccctggattatatttctctttatagactt
taagatttttcttcgcaaatttaagtaattgacaatagaaaagaaaataa
atcctattttaattttcttcaacaagatgtcccaatcagattacaacttt
aagtgaagattaaagttgccaagcatagtcatcagttccaatcagctctc
agaaaactcctcttaaaaagacagtcaatgtccactcagggtcttcttca
gccaaaggtaacctcaaaatattaagtacataagggtggctttgaactct
tcatcctccgtcctcatccttcccagacctgatactatagggttgtacca
ccaaaagctgagatattgtcttagtcagggtttctattcctgaacaaaca
tcatgaccaagaaacaagttggggaggaaagggtttattcggcttacact
tccatactgctgttcatcacaagggaagtcagactggaactcagcagtca
gagcagagctgatgcagaggcatgaggatgttcttactgctgcctccctg
ctgctcagcctgctctctatagatccagactacagccagagaatgatcac
cacagggcttccctgatctaattggaaaagccttacgttgaatctcatgg
gagcatttctcctcaagggtgaagagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10176290_10177495
seq2: B6Ng01-261C08.b_46_1244

seq1  GAATTCCATGCCTTCAGCTCACCAACATTGCTGGTTAAGGAATTTACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCTTCAGCTCACCAACATTGCTGGTTAAGGAATTTACAAG  50

seq1  CAGCACTATTATAAATATTCATGAATATTTGGTCACATGAATAAGTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTATTATAAATATTCATGAATATTTGGTCACATGAATAAGTTCCT  100

seq1  TAGTGAAGTATTTGTATATAAAGGAATGCTTTAAAATCTATACACAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAGTATTTGTATATAAAGGAATGCTTTAAAATCTATACACAAAGG  150

seq1  TATGCAAAACTCACCCTCATTTGTTCAGCATGAGTGTTAGTACATTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAACTCACCCTCATTTGTTCAGCATGAGTGTTAGTACATTCATT  200

seq1  CATTCAGGCTGGGACAATGATGCTTCAAGATTGTCCATCTGTTATATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGGCTGGGACAATGATGCTTCAAGATTGTCCATCTGTTATATAAC  250

seq1  TATTGTTAAAGAGTACTATTCTCTAATGCTACAATACTTCCTTAGCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTAAAGAGTACTATTCTCTAATGCTACAATACTTCCTTAGCCTGT  300

seq1  TTACTCATGAAATGCCCAGAAAGTCTTCCAACATCAGTGGTAGGAAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCATGAAATGCCCAGAAAGTCTTCCAACATCAGTGGTAGGAAAATC  350

seq1  TGAAATTTATGTATGGTTTAATTTTAGAACACTATAAATTGGTTTCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTATGTATGGTTTAATTTTAGAACACTATAAATTGGTTTCAAAA  400

seq1  TTACCACTGAACAATGCCAGCCACACTGACCTATCTCATTTGTAATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACTGAACAATGCCAGCCACACTGACCTATCTCATTTGTAATGTTT  450

seq1  TCTTTTTTCCCTTTACTTTGTTTAATGACTTTCAGTATCACTTGTACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCCCTTTACTTTGTTTAATGACTTTCAGTATCACTTGTACAAA  500

seq1  TAACAGGTTTTATTATTCCATCTTCATACATCTGATGCACTTTGATAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGTTTTATTATTCCATCTTCATACATCTGATGCACTTTGATAATT  550

seq1  TAATATCATTCCTTAAGCAAGAGAGAACAAGGTGGAGCTCAGTTAGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCATTCCTTAAGCAAGAGAGAACAAGGTGGAGCTCAGTTAGCACT  600

seq1  CATATATCTTCATGGAGACTCAGTACTCATATATCTGCATGGAGACTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATCTTCATGGAGACTCAGTACTCATATATCTGCATGGAGACTCAG  650

seq1  TACTCATATATCTGCATGGAGACTCAGTACACATATATCTGCATGGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATATATCTGCATGGAGACTCAGTACACATATATCTGCATGGAGAC  700

seq1  TCAATACTCATATATCTGCATGAGAACTCAGTACTCATATATCTGCATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACTCATATATCTGCATGAGAACTCAGTACTCATATATCTGCATGG  750

seq1  AGACTCAGTACTCATATATCTGCATGGAGACTCAAACATATCCAACTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGTACTCATATATCTGCATGGAGACTCAAACATATCCAACTGAA  800

seq1  TTTACATCCTCTTGTGTGTTTATTATATACAAAATACTTTTCAAAGCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCCTCTTGTGTGTTTATTATATACAAAATACTTTTCAAAGCATT  850

seq1  GGGTTTAAGAAACATAGAGTTTGACTGTTTTTGTTTTCTTAATTTTCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAAGAAACATAGAGTTTGACTGTTTTTGTTTTCTTAATTTTCTCC  900

seq1  ATTTGTATAACCTTAACATTCTGTGAGACATAGGAGCCCGTGATGGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATAACCTTAACATTCTGTGAGACATAGGAGCCCGTGATGGAAAA  950

seq1  CATTTTCAATATAA-TCTT-AGATCTCACATGCT-CATGCATTTACAGAA  997
      |||||||||||||| |||| |||||    ||||| |||||||||||||||
seq2  CATTTTCAATATAATTCTTAAGATC-GTGATGCTCCATGCATTTACAGAA  999

seq1  TTTACATAGTAAAAATGACCATCCTATCAAAAGCAGTATACAGATTCAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTACATAGTAAAAATGACCATCCTATCAAAAGCAGTATACAGATTC-AC  1048

seq1  CTAATCCCCATCAAAATCCCAAAACAATTCTTCAAAGACATGGAAAGAGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCCCATCAAAATCCCAAAACAATTCTTCAAAGACATGGAAAGAGC  1098

seq1  AATCTCAAATTCACCTGGAAAAGCAAAAAACCGAGAATAGCAAAACAACT  1147
       |||||||  ||| |||| |||||||||||||||  | ||| ||||||||
seq2  -ATCTCAA--TCA-CTGGTAAAGCAAAAAACCGAAGAAAGC-AAACAACT  1143

seq1  CTT-AACAGTTAAAGAACTTCTGGGGGGAATCACCATCTC-TGACTATAC  1195
      ||| |||||||||  | ||||    ||| ||| ||||||| |||||||||
seq2  CTTAAACAGTTAAGAACCTTC----GGGGATC-CCATCTCTTGACTATAC  1188

seq1  TACAGAACAAT  1206
      ||| |||||||
seq2  TACGGAACAAT  1199


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