BAC Information

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BAC

Clone NameB6Ng01-261J17
Chromosome12 (Build37)
Map Location 100,306,097 - 100,462,405
singlet/doubletdoublet
Overlap geneChes1
Upstream geneLOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779
Downstream geneLOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261J17.bB6Ng01-261J17.g
ACCGA066235GA066236
length757968
definitionB6Ng01-261J17.b B6Ng01-261J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,461,653 - 100,462,405)(100,306,097 - 100,307,063)
sequence
gaattccactgtccatcctgagccccgcactcaggtgccatccctagcca
aggactgagttctactcacccgaccagtggctaagataaagtcacccatt
catttatcctgtgtgtgcttcgctccacactgataggtcccaagtaccat
cttaagcagcaagtgaggcaggcaaggaagaaccataacggcccacttgc
cttgtagacaggcatatgagaagacgccagggtgcacctctggttgtcca
tatctgcactactatatttagtatgtgacattttccccacatatattgtc
tttggatcaatcgtgtgacattataacaccatgaaaatcacttgacgtgt
aaggaggagtgggggaggggaacacattcactgatttccagaagtgatca
gactgcccaaggtttctatctgagaaaactgtttggtaggcctgccagct
ctgagctggtttgttttgttctgtttttttttttttttgtttgtttgttt
tgtttttttgagagtgaggaccatgccttctgtctgcctttatattctaa
ggttgcttaaatgcatagcctttccagacacttctgtctggtacccaaca
gaagtcacaccaagaacccgctcaacacctacccaacaggccatggcttt
gcaggagtggtatattctccctggcttttaagactgtcctctaccctcca
gataccttggagcaaatgctgcatctgggaaggtgccgcttggaattcca
tatttct
gaattcagaagacaagactgtctgaattatgtgtgcaaagcactggcttc
cagccccagcactcaattttttttttattaaaataaaaagtccctacggg
aagaagggaaagaggatggagacataaaccaagaaaggatattttgctgc
agcaagatataacataaagaaggtttatcttgcctcacagctggagggtg
cagtccatagaggtgaagtcaggtgccaggagcccgaggcagctgcttac
attgtatcagcagtgaagaagccaagagagataaaactggagagcagctg
gcttcctcttttttaagcagactgagacccagcccatggacacctgcatt
cagggtgggacttctctgctccgttaacccaagataacccctcctaggca
cacccagagacttgtctcctagttgattctagatcctgtctagtggtcaa
tcaatataaaccatcatgggagggattgttagacactgaaaaagttgagg
gggtttttactttgttccccagaggtgggatgggcgtgctgggggcgggg
ttaactaaggaatgcttggcaaagattaatctgtacgtatgctatagtaa
gagggtagattatggcaagctaatgttccataatgggggaagagaaaaca
aatctgatgagctgttccagactcacagatgaattcacaaccagcacccc
tggggcggagcctctgagaatcctccgagaaggtgagaggatctagatgc
atctgctcagacaaatgtggaaagacaaggctttctctctagctaaaatg
atcctttcccttagcttgtcgccctcattgccttatgggatgtcccgtca
ccacacaggtttttggtttggctttgggagttccagaatctgtgttgccc
acagaaactggaaaatgtgggtttgtttatgtagaagcaaagttgggtat
ttttctattactgatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_100461653_100462405
seq2: B6Ng01-261J17.b_47_803 (reverse)

seq1  AGAACTATGG-ACTCCAAGCGGCACCTT-CCAGATGCAGCATCTGCTCCA  48
      |||| ||||| | ||||||||||||||| ||||||||||||| |||||||
seq2  AGAAATATGGAATTCCAAGCGGCACCTTCCCAGATGCAGCATTTGCTCCA  50

seq1  AGGTATCTGGA-GGTAGAGGACAGTCTTTAAAGCCA-GGAGAATATACCA  96
      ||||||||||| |||||||||||||||| ||||||| |||||||||||||
seq2  AGGTATCTGGAGGGTAGAGGACAGTCTTAAAAGCCAGGGAGAATATACCA  100

seq1  CTCCTGCAAAGCCATGGCCTGTTGGGTAGGTGTTTGGCGGGTTCTTGGTG  146
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  CTCCTGCAAAGCCATGGCCTGTTGGGTAGGTGTTGAGCGGGTTCTTGGTG  150

seq1  TGACTTCTGTTGGGTACCAGACAGAAGTGTCTGGAAAGGCTATGCATTTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTGTTGGGTACCAGACAGAAGTGTCTGGAAAGGCTATGCATTTA  200

seq1  AGCAACCTTAGAATATAAAGGCAGACAGAAGGCATGGTCCTCACTCTCAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCTTAGAATATAAAGGCAGACAGAAGGCATGGTCCTCACTCTCAA  250

seq1  AAAAACAAAACAAACAAACAAAAAAAAAAAAAAACAGAACAAAACAAACC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAACAAACAAACAAAAAAAAAAAAAAACAGAACAAAACAAACC  300

seq1  AGCTCAGAGCTGGCAGGCCTACCAAACAGTTTTCTCAGATAGAAACCTTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGAGCTGGCAGGCCTACCAAACAGTTTTCTCAGATAGAAACCTTG  350

seq1  GGCAGTCTGATCACTTCTGGAAATCAGTGAATGTGTTCCCCTCCCCCACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCTGATCACTTCTGGAAATCAGTGAATGTGTTCCCCTCCCCCACT  400

seq1  CCTCCTTACACGTCAAGTGATTTTCATGGTGTTATAATGTCACACGATTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTACACGTCAAGTGATTTTCATGGTGTTATAATGTCACACGATTG  450

seq1  ATCCAAAGACAATATATGTGGGGAAAATGTCACATACTAAATATAGTAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAGACAATATATGTGGGGAAAATGTCACATACTAAATATAGTAGT  500

seq1  GCAGATATGGACAACCAGAGGTGCACCCTGGCGTCTTCTCATATGCCTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATATGGACAACCAGAGGTGCACCCTGGCGTCTTCTCATATGCCTGT  550

seq1  CTACAAGGCAAGTGGGCCGTTATGGTTCTTCCTTGCCTGCCTCACTTGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGGCAAGTGGGCCGTTATGGTTCTTCCTTGCCTGCCTCACTTGCT  600

seq1  GCTTAAGATGGTACTTGGGACCTATCAGTGTGGAGCGAAGCACACACAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGATGGTACTTGGGACCTATCAGTGTGGAGCGAAGCACACACAGG  650

seq1  ATAAATGAATGGGTGACTTTATCTTAGCCACTGGTCGGGTGAGTAGAACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAATGGGTGACTTTATCTTAGCCACTGGTCGGGTGAGTAGAACT  700

seq1  CAGTCCTTGGCTAGGGATGGCACCTGAGTGCGGGGCTCAGGATGGACAGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTGGCTAGGGATGGCACCTGAGTGCGGGGCTCAGGATGGACAGT  750

seq1  GGAATTC  753
      |||||||
seq2  GGAATTC  757

seq1: chr12_100306097_100307063
seq2: B6Ng01-261J17.g_65_1032

seq1  GAATTCAGAAGACAAGACTGTCTGAATTATGTGTGCAAAGCACTGGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGACAAGACTGTCTGAATTATGTGTGCAAAGCACTGGCTTC  50

seq1  CAGCCCCAGCACTCAATTTTTTTTTTATTAAAATAAAAAGTCCCTACGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAGCACTCAATTTTTTTTTTATTAAAATAAAAAGTCCCTACGGG  100

seq1  AAGAAGGGAAAGAGGATGGAGACATAAACCAAGAAAGGATATTTTGCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGAAAGAGGATGGAGACATAAACCAAGAAAGGATATTTTGCTGC  150

seq1  AGCAAGATATAACATAAAGAAGGTTTATCTTGCCTCACAGCTGGAGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATATAACATAAAGAAGGTTTATCTTGCCTCACAGCTGGAGGGTG  200

seq1  CAGTCCATAGAGGTGAAGTCAGGTGCCAGGAGCCCGAGGCAGCTGCTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCATAGAGGTGAAGTCAGGTGCCAGGAGCCCGAGGCAGCTGCTTAC  250

seq1  ATTGTATCAGCAGTGAAGAAGCCAAGAGAGATAAAACTGGAGAGCAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATCAGCAGTGAAGAAGCCAAGAGAGATAAAACTGGAGAGCAGCTG  300

seq1  GCTTCCTCTTTTTTAAGCAGACTGAGACCCAGCCCATGGACACCTGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCTTTTTTAAGCAGACTGAGACCCAGCCCATGGACACCTGCATT  350

seq1  CAGGGTGGGACTTCTCTGCTCCGTTAACCCAAGATAACCCCTCCTAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGGGACTTCTCTGCTCCGTTAACCCAAGATAACCCCTCCTAGGCA  400

seq1  CACCCAGAGACTTGTCTCCTAGTTGATTCTAGATCCTGTCTAGTGGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGAGACTTGTCTCCTAGTTGATTCTAGATCCTGTCTAGTGGTCAA  450

seq1  TCAATATAAACCATCATGGGAGGGATTGTTAGACACTGAAAAAGTTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATAAACCATCATGGGAGGGATTGTTAGACACTGAAAAAGTTGAGG  500

seq1  GGGTTTTTACTTTGTTCCCCAGAGGTGGGATGGGCGTGCTGGGGGCGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTACTTTGTTCCCCAGAGGTGGGATGGGCGTGCTGGGGGCGGGG  550

seq1  TTAACTAAGGAATGCTTGGCAAAGATTAATCTGTACGTATGCTATAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAAGGAATGCTTGGCAAAGATTAATCTGTACGTATGCTATAGTAA  600

seq1  GAGGGTAGATTATGGCAAGCTAATGTTCCATAATGGGGGAAGAGAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAGATTATGGCAAGCTAATGTTCCATAATGGGGGAAGAGAAAACA  650

seq1  AATCTGATGAGCTGTTCCAGACTCACAGATGAATTCACAACCAGCACCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGATGAGCTGTTCCAGACTCACAGATGAATTCACAACCAGCACCCC  700

seq1  TGGGGCGGAGCCTCTGAGAATCCTCCGAGAAGGTGAGAGGATCTAGATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCGGAGCCTCTGAGAATCCTCCGAGAAGGTGAGAGGATCTAGATGC  750

seq1  ATCTGCTCAGACAAATGTGGAAAGACAAGGCTTTCTCTCTAGCTAAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCAGACAAATGTGGAAAGACAAGGCTTTCTCTCTAGCTAAAATG  800

seq1  ATCCTTTCCCTTAGCTTGTCGCCCTCATTGCCTTATGGGATGTCCCGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCCCTTAGCTTGTCGCCCTCATTGCCTTATGGGATGTCCCGTCA  850

seq1  CCACACAGGTTTTTGGTTTGGCTTTGGGAGTTCCAGAATCTGTGTTGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGGTTTTTGGTTTGGCTTTGGGAGTTCCAGAATCTGTGTTGCCC  900

seq1  ACAGAAACTGGAAAATGTGGG-TTGTTTATGTAGAAGCAAAGTTGGGTAT  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAGAAACTGGAAAATGTGGGTTTGTTTATGTAGAAGCAAAGTTGGGTAT  950

seq1  TTTTCTATTACTGATGTT  967
      ||||||||||||||||||
seq2  TTTTCTATTACTGATGTT  968