BAC Information

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BAC

Clone NameB6Ng01-262E07
Chromosome12 (Build37)7 (Build37)
Map Location 4,142,991 - 4,143,15490,141,512 - 90,142,672
singlet/doubletsingletsinglet
Overlap geneAdcy3
Upstream geneLOC668270, EG668274, LOC100041946, 1700012B15Rik, Rab10, Kif3c, LOC100043040, Asxl2, LOC627245, Dtnb, LOC668197, Dnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik
Downstream geneCenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262E07.bB6Ng01-262E07.g
ACCGA066729GA066730
length4291,150
definitionB6Ng01-262E07.b B6Ng01-262E07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,142,991 - 4,143,154)(90,141,512 - 90,142,672)
sequence
gaattccaggatagccagagctacagagaaaccctgtctcaaaaaataaa
taaataaataaataaataaataaataaataaataaataaataaaaataaa
taaaataaaataaaataaaataaaataaaataaaataaaaaaggaattag
aagaattgggaggtgtgaccttgttagagtaggtgtggccttattggagg
aaatgtgtctctggggatagattttaaggtttcaaaagcccagtttctgt
cccaccctgtctctttctgtctctttctgtctctttctatctctctttgt
caatctctatctctgtctatgtctttctttttctctttcttgttctcctc
cctctccctctccctctccctctccctctccctctctctctctctctctc
tctctctctgtctctccttcttcccctcc
gaattccagactactctagagacatctatgggaatgaatagagaaaaaca
aacaaacaaaaacaaaaacaaaaacaaaaaaccccaaacaaacaaaactt
ggatttaccaagtttcagctaggttgctttacccaggtagctttctgttt
tcctatgcatgtggccactattcttgggatataactaagtattctcacac
accactccataagtatgcaaaaagaatttttcaataaacattgttgggtg
atacgtcacacatacaaaaatacataagacatatgtgagcagcttggtga
atcataaaatgtacacccacggaccctccctccagctgaggcagatattt
ccagcactccaccgtgctgagctctggtgtaaaatatatcaagtttttac
cccacccatccccatggagtaatccatgatcccacgttcatgtttattat
ccatttctggcttatctttatgtttcaatgcctctgtataacccacaaaa
taaaacagttctatttcacccgttttagagcttgctgactggatacattc
tgtatgtggttgtgagaccacgagacttccaggcgtccatcaacacgggg
gcaatagaccaagagctcaggagccaaactctgaaatgaatagatgtttg
taccacacgctgttcgctggcactgactggcggaggtgagaacatgaagg
ctgatgtgtttcttaggcaaatcttctgtggacacacctcggggcaaggg
tcacctttcctagaatgtactgtaacctatcctgattcggcctgagcttt
cctgtctctgttccagctgtcagcccacatgcaaactgaggctcttctag
agtttgtccagttctgctaccatctcccacaaagctattttctctaaata
aattcctaaacacttaattgcaccttgatggatgcttctcagagacttga
aaactataccctccaacacttttgacttttgtctcaaactacatttcatg
tagttgtgtgtgtgtgcgcgcgctccagtcatagggcacatgttggagtc
agaggccactcctgaaatcagatcctctgccttccactcgtgcgtcccta
gatgaaactcgggttgtcagctctcagcgagcttgaccgttacacctcag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_4142991_4143154
seq2: B6Ng01-262E07.b_51_476 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  GGAGGGGAAGAAGGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGGG  50

seq1  --------------------------------------------------  0
                                                        
seq2  AGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGGAGAACAAGAAAGAGAAA  100

seq1  ---------------GGAG---GGGAGT-----TGAGGGA---CTAGAGA  24
                      |||   | || |      ||| ||     |||||
seq2  AAGAAAGACATAGACAGAGATAGAGATTGACAAAGAGAGATAGAAAGAGA  150

seq1  CAGAGAAAGGCAGAGAGAGA---GGTGGGAGGGAGAGGGGG---------  62
      |||| | || |||| |||||   |||||||  || |  |||         
seq2  CAGAAAGAGACAGAAAGAGACAGGGTGGGACAGAAACTGGGCTTTTGAAA  200

seq1  --------------------------------------------------  62
                                                        
seq2  CCTTAAAATCTATCCCCAGAGACACATTTCCTCCAATAAGGCCACACCTA  250

seq1  --------AG--CACGC---------------------------------  69
              ||  ||| |                                 
seq2  CTCTAACAAGGTCACACCTCCCAATTCTTCTAATTCCTTTTTTATTTTAT  300

seq1  -----------------------------TTTA--TTTATTTATTTATTT  88
                                   ||||  |||||||||||||||
seq2  TTTATTTTATTTTATTTTATTTTATTTTATTTATTTTTATTTATTTATTT  350

seq1  ATTTATTTATTTATTTATTTATTTATTTATTTA--TTTTGAGGCAGGGTT  136
      |||||||||||||||||||||||||||||||||  ||||||| |||||||
seq2  ATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTGAGACAGGGTT  400

seq1  TCTCCGTGTAGTCCTGGCTGTCCTGGAA  164
      ||||  |||||  |||||| ||||||||
seq2  TCTC--TGTAGCTCTGGCTATCCTGGAA  426

seq1: chr7_90141512_90142672
seq2: B6Ng01-262E07.g_66_1215

seq1  GAATTCCAGACTACTCTAGAGACATCTATGGGAATGAATAGAGAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACTACTCTAGAGACATCTATGGGAATGAATAGAGAAAAACA  50

seq1  AACAAACAAAAACAAAAACAAAAACAAAAAACCCCAAACAAACAAAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAACAAAAACAAAAACAAAAAACCCCAAACAAACAAAACTT  100

seq1  GGATTTACCAAGTTTCAGCTAGGTTGCTTTACCCAGGTAGCTTTCTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTACCAAGTTTCAGCTAGGTTGCTTTACCCAGGTAGCTTTCTGTTT  150

seq1  TCCTATGCATGTGGCCACTATTCTTGGGATATAACTAAGTATTCTCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGCATGTGGCCACTATTCTTGGGATATAACTAAGTATTCTCACAC  200

seq1  ACCACTCCATAAGTATGCAAAAAGAATTTTTCAATAAACATTGTTGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCCATAAGTATGCAAAAAGAATTTTTCAATAAACATTGTTGGGTG  250

seq1  ATACGTCACACATACAAAAATACATAAGACATATGTGAGCAGCTTGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTCACACATACAAAAATACATAAGACATATGTGAGCAGCTTGGTGA  300

seq1  ATCATAAAATGTACACCCACGGACCCTCCCTCCAGCTGAGGCAGATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAAATGTACACCCACGGACCCTCCCTCCAGCTGAGGCAGATATTT  350

seq1  CCAGCACTCCACCGTGCTGAGCTCTGGTGTAAAATATATCAAGTTTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCCACCGTGCTGAGCTCTGGTGTAAAATATATCAAGTTTTTAC  400

seq1  CCCACCCATCCCCATGGAGTAATCCATGATCCCACGTTCATGTTTATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCATCCCCATGGAGTAATCCATGATCCCACGTTCATGTTTATTAT  450

seq1  CCATTTCTGGCTTATCTTTATGTTTCAATGCCTCTGTATAACCCACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTGGCTTATCTTTATGTTTCAATGCCTCTGTATAACCCACAAAA  500

seq1  TAAAACAGTTCTATTTCACCCGTTTTAGAGCTTGCTGACTGGATACATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGTTCTATTTCACCCGTTTTAGAGCTTGCTGACTGGATACATTC  550

seq1  TGTATGTGGTTGTGAGACCACGAGACTTCCAGGCGTCCATCAACACGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGGTTGTGAGACCACGAGACTTCCAGGCGTCCATCAACACGGGG  600

seq1  GCAATAGACCAAGAGCTCAGGAGCCAAACTCTGAAATGAATAGATGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGACCAAGAGCTCAGGAGCCAAACTCTGAAATGAATAGATGTTTG  650

seq1  TACCACACGCTGTTCGCTGGCACTGACTGGCGGAGGTGAGAACATGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACGCTGTTCGCTGGCACTGACTGGCGGAGGTGAGAACATGAAGG  700

seq1  CTGATGTGTTTCTTAGGCAAATCTTCTGTGGACACACCTCGGGGCAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTGTTTCTTAGGCAAATCTTCTGTGGACACACCTCGGGGCAAGGG  750

seq1  TCACCTTTCCTAGAATGTACTGTAACCTATCCTGATTCGGCCTGAGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTCCTAGAATGTACTGTAACCTATCCTGATTCGGCCTGAGCTTT  800

seq1  CCTGTCTCTGTTCCAGCTGTCAGCCCACATGCAAACTGAGGCTCTTCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCTGTTCCAGCTGTCAGCCCACATGCAAACTGAGGCTCTTCTAG  850

seq1  AGTTTGTCCAGTTCTGCTACCATCTCCCACAAAGCTATTTTCTCTAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTTTGTCCAGTTCTGCTACCATCTCCCACAAAGCTATTTTCTCTAAAT-  899

seq1  AAATTCCTAAACACTTAATTGCACCTTGATGGATGCTTCTCAGAAGACTT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAATTCCTAAACACTTAATTGCACCTTGATGGATGCTTCTCAG-AGACTT  948

seq1  GAAAACTATACCCTCCAACACTTTTGACTTTTGTCTCAAACTACATTTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTATACCCTCCAACACTTTTGACTTTTGTCTCAAACTACATTTCA  998

seq1  TGTAG-TGTGTGTGTGTGCGCGCGCTCCAGTCATAGGGCACATGTGGAGG  1049
      ||||| ||||||||||||||||||||||||||||||||||||||| |  |
seq2  TGTAGTTGTGTGTGTGTGCGCGCGCTCCAGTCATAGGGCACATGTTGGAG  1048

seq1  TCAGAGGGCCACTCCCTGAAATCAGAT-CTCTG-CTTCCACTCCGTGCGT  1097
      ||||| ||||||| ||||||||||||| ||||| |||||||| |||||||
seq2  TCAGA-GGCCACT-CCTGAAATCAGATCCTCTGCCTTCCACT-CGTGCGT  1095

seq1  CCCTAGGATGAAACTCGGGTTGTCAGGCTCTCAGGCAGAGCCTTGACCCG  1147
      ||||| ||||||||||||||||||| ||||||||  ||   |||||||  
seq2  CCCTA-GATGAAACTCGGGTTGTCA-GCTCTCAGCGAG---CTTGACC--  1138

seq1  CTGAACCACCTCAG  1161
        |   ||||||||
seq2  --GTTACACCTCAG  1150