BAC Information

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BAC

Clone NameB6Ng01-262O02
Chromosome12 (Build37)
Map Location 35,844,260 - 35,977,102
singlet/doubletdoublet
Overlap genenone
Upstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262O02.bB6Ng01-262O02.g
ACCGA067184GA067185
length1,0691,084
definitionB6Ng01-262O02.b B6Ng01-262O02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,844,260 - 35,845,343)(35,976,028 - 35,977,102)
sequence
gaattccttggcgttcctgaaacgaggaagatgtgtctagtgatgacttg
agaatccaagaggcatgaaatgaaatgaagggttcattagaatgcataac
aatccctccaacttgtaaattattcttaagcaaagctgacaacttgtaat
taacctgaaagccaccaaaatgcacaccgtattcacaggtctctcccaaa
ttatttttaacaacgtgcttttcactagaaaggctgtgtggtatacagcc
tcatcttgctcttcggctcagtgggggcttctggcactttttcatagtgt
gtttcactgggagaatggtttctttcaccagcccacttttgataaaaatg
ccccccatcttttaccatcaagtcatttttcccaaaaagaacaactgcac
tgtttagaagtgcacactcctgagttaactgcctatggttgaagttttgg
ctctactggtttcaatctacatggactgggtcttgttaatacaaaaatgc
atctgtctcataataagaggtagtttactccatggctgaaaatgggtcat
tctagcctggaggcactcatttagtttactcaaaatatcatgttccaata
taacagtttcatgaaggttttataaatcaatacacttttcagattttttt
tttttggtgagactgtcaggtgggttatgccaaagcgaggaagactgtta
tagactctaatgatctaatgacatccttgtcctttggcttgctggaaact
gatggagcatttcataaatatttgtctataatcacaagcttggctgttaa
gtcaaacatggaagtatactaccagtggctacaagggagctgaagtaacc
ctttggctttgactggtctgacatccatgtctccacaatctatgaatcac
tttgccttgaggatataagaaagagtgtgggcttttacttttgggactgc
agtgtacagacgtgaatgtatgcagcggatttcgatatgactaatatcta
catgatactgcagtgatatctagtctgtagctttataacggatttagata
agcatctcgaccatgatag
gaattcagtgaatggggccagcatccagcttctagagaatcttttcttcc
tttgaaattgtggactgcaatcgatggtttgaaaggaatgaagttggtgt
atctcgcccaacaacttctgtggatacttttattatacaatgagcttttg
aaagaggaagtaggcctttcactggcatggcctcttgcaaagatttcgct
catttccagtgagaagttctcaccaatggacaatgcttcaaagtgaacaa
tctcagtatttcaacacacccgtggtcgagtagggagggcagtggaatga
ggatgaaagcctgtgctattctgacctttcccatgaccgtaattgatgga
tacactccccaaaccctttgccaagctgctgatatatttagaaaagtgcc
tgtgactcactgtacacataatctggcaatgaataacgggcaataactat
gaaggccaattcactgcccaagggtgtggcttttccatgtgtagcacctt
ctgcaggatgcacagttgtctcaattagtcacttcatgaccgaactcaga
actgtataggccaagaactgttcatcaaaataaatatcaacacagttaac
atcaaaaagtgtcaatgtccattttgatattaataaaagtgaaaaatgct
ttaaaggaaaaaaggggtttactctggagttagtgagatgactcagcagt
taagagcacactgactgctctttcagaggacacaggtttggttgccaaca
cacatatgatagcttacaaacatccctaagtccagtttcctagggatctg
ttgcttttcttctgacttccaaaggtaccaggcccacatgcaatacatat
gcatccatgcagacaaaatactcatctgtgtaaataaatctaaatatttt
tttaaatagtcaaaagttgatgctgacttctaccaagcacttggggatat
gtaaatgtggaggcatgtcacttctacactggcaatcaaaatcaaaacta
tcatatcttttgagtcttgaatttttacttaaatagtagggggatagaag
aaaggttatatacctaacttgattgcctcagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35844260_35845343
seq2: B6Ng01-262O02.b_40_1108

seq1  GAATTCCTTGGCATTCCTGAAACGAGGAAGATGTTTCTAGTGATGACTTG  50
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  GAATTCCTTGGCGTTCCTGAAACGAGGAAGATGTGTCTAGTGATGACTTG  50

seq1  AGAATCCAAGAGGCATGAAATGAAATGAAGGGTTCATTAAAATGCATAAC  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAATCCAAGAGGCATGAAATGAAATGAAGGGTTCATTAGAATGCATAAC  100

seq1  AATCCCTCCAACTTGTAAATTATTCTTAAGCAAAGCTGACAACTTGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTCCAACTTGTAAATTATTCTTAAGCAAAGCTGACAACTTGTAAT  150

seq1  TAACCTGAAAGCCACCAAAATGCACACCGTATTCACAGGTCTCTCCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGAAAGCCACCAAAATGCACACCGTATTCACAGGTCTCTCCCAAA  200

seq1  TTATTTTTAACAACATGCTTTTCACTAGAAAGGCTGTGTGGTATACAGCC  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTATTTTTAACAACGTGCTTTTCACTAGAAAGGCTGTGTGGTATACAGCC  250

seq1  TCATCTTGCTCTTCGGCTCAGTGGGGGCTTCTGGCACTTTTTCATAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTGCTCTTCGGCTCAGTGGGGGCTTCTGGCACTTTTTCATAGTGT  300

seq1  GTTTCACTGGGAGAATGGTTTCTTTCACCAGCCCACTTTTGATAAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACTGGGAGAATGGTTTCTTTCACCAGCCCACTTTTGATAAAAATG  350

seq1  CCCCCCATCTTTTAGCATCAAGTCATTTTTCCCAAAAAGAAGAACTGCAC  400
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  CCCCCCATCTTTTACCATCAAGTCATTTTTCCCAAAAAGAACAACTGCAC  400

seq1  TGTTTAGAAGTGCAGACTCAGGAGTTAACTGCCTATGGTTGAAGTTTTGG  450
      |||||||||||||| ||||  |||||||||||||||||||||||||||||
seq2  TGTTTAGAAGTGCACACTCCTGAGTTAACTGCCTATGGTTGAAGTTTTGG  450

seq1  CTCTACTGGTTTCAATCTACATGGACTGGGTCTTGTTAATACAAAAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTGGTTTCAATCTACATGGACTGGGTCTTGTTAATACAAAAATGC  500

seq1  ATCTGTCTCAGAATAAGAGGTAGTTTACTCCAGGGCTGAAAATGGGTCAT  550
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  ATCTGTCTCATAATAAGAGGTAGTTTACTCCATGGCTGAAAATGGGTCAT  550

seq1  TCTAGCCTGGAGGCACTCATTTAGTTTACTCAAAATAGCATGTTCCAATA  600
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTAGCCTGGAGGCACTCATTTAGTTTACTCAAAATATCATGTTCCAATA  600

seq1  TAACAGTTTCATGAAGGTTTTATAAATCAATACACTTTTCAGATTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTTCATGAAGGTTTTATAAATCAATACACTTTTCAGATTTTTTT  650

seq1  TTTTTGGTGAGACTGTCAGGTGGGTTATGCCAAAGCGAGGAAGACTGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTGAGACTGTCAGGTGGGTTATGCCAAAGCGAGGAAGACTGTTA  700

seq1  TAGACTCTAATGATCTAATGACATCCTTGTCCTTTGGCTTGCTGGAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGACTCTAATGATCTAATGACATCCTTGTCCTTTGGCTTGCTGGAAACT  750

seq1  GATGGTGCATTTCATAAATATTTGTCTAATAATCACAAGCTTGGCTGTTA  800
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  GATGGAGCATTTCATAAATATTTGTCT-ATAATCACAAGCTTGGCTGTTA  799

seq1  AGTCAAACATGGAAGTATCCAACCAGTGGCTACAAAGGGAGCTGAAGTAA  850
      |||||||||||||||||| | |||||||||||| ||||||||||||||||
seq2  AGTCAAACATGGAAGTATACTACCAGTGGCTAC-AAGGGAGCTGAAGTAA  848

seq1  CCCATTTGGCTTTGACTGGTCTGACAATCCATGTCTCCACAATCTATGAA  900
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCC-TTTGGCTTTGACTGGTCTGAC-ATCCATGTCTCCACAATCTATGAA  896

seq1  TCAATTTGCCTTGAGGAATATTAAGAAAAAGTGT-GGCTTTTAATTTTGG  949
      ||| |||||||||||| ||| ||||||| ||||| |||||||| ||||||
seq2  TCACTTTGCCTTGAGG-ATA-TAAGAAAGAGTGTGGGCTTTTACTTTTGG  944

seq1  GAACTGCAGTTTACAGCCTTGAATGTATGCAAAGGATTT-GATATTAATA  998
      | |||||||| ||||| | ||||||||||||  |||||| ||||| | ||
seq2  G-ACTGCAGTGTACAGACGTGAATGTATGCAGCGGATTTCGATATGACTA  993

seq1  ATATCTACATGATACTGCTGTGATTATCTAGCCTGTTGCTATATAAAGGA  1048
      |||||||||||||||||| |||| ||||||| |||| ||| ||||| |||
seq2  ATATCTACATGATACTGCAGTGA-TATCTAGTCTGTAGCTTTATAACGGA  1042

seq1  TTTAGAATAGCATCT-GACCCAGGATAAGTATGATAG  1084
      ||||||  ||||||| ||||          |||||||
seq2  TTTAGATAAGCATCTCGACC----------ATGATAG  1069

seq1: chr12_35976028_35977102
seq2: B6Ng01-262O02.g_66_1149 (reverse)

seq1  TTTCTGAG--CATTAAGTTAGTTATATAA-CTTTCTTCTAATCCCCTA-T  46
      ||||||||   || ||||||| ||||||| ||||||||||  |||||| |
seq2  TTTCTGAGGCAATCAAGTTAGGTATATAACCTTTCTTCTATCCCCCTACT  50

seq1  ATTT-AGTAAAAATTCAAGACTCAAAGAATATG-TAGTTT--GTTTTGAT  92
      |||| |||||||||||||||||||||  ||||| ||||||   |||||||
seq2  ATTTAAGTAAAAATTCAAGACTCAAAAGATATGATAGTTTTGATTTTGAT  100

seq1  TGCCAGTGTAGAAGTGACATGCCTCCACATTTACATAT-CCCAAGTGCTT  141
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGCCAGTGTAGAAGTGACATGCCTCCACATTTACATATCCCCAAGTGCTT  150

seq1  TGTAGAAGTCAGCATCAACTTTTGACTATTTAAAAAAATATTTTAGATTT  191
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTAGAAGTCAGCATCAACTTTTGACTATTTAAAAAAATA-TTTAGATTT  199

seq1  ATTTACACAGATGAGTATTTTGTCTGCATGGATGCATATGTATTGCATGT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACAGATGAGTATTTTGTCTGCATGGATGCATATGTATTGCATGT  249

seq1  GGGCCTGGTACCTTTGGAAGTCAGAAG-AAAGCAACAGATCCCTAGG-AA  289
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  GGGCCTGGTACCTTTGGAAGTCAGAAGAAAAGCAACAGATCCCTAGGAAA  299

seq1  CTGGACTTAGGGATGTTTGTAAGCTATCATATGTGTGTTGGCAACCAAAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTAGGGATGTTTGTAAGCTATCATATGTGTGTTGGCAACCAAAC  349

seq1  CTGTGTCCTCTGAAAGAGCAGTCAGTGTGCTCTTAACTGCTGAGTCATCT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCTCTGAAAGAGCAGTCAGTGTGCTCTTAACTGCTGAGTCATCT  399

seq1  CACTAACTCCAGAGTAAACCCCTTTTTTCCTTTAAAGCATTTTTCACTTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACTCCAGAGTAAACCCCTTTTTTCCTTTAAAGCATTTTTCACTTT  449

seq1  TATTAATATCAAAATGGACATTGAAACTTTTTGATCTTAACTGTGTTGAT  489
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  TATTAATATCAAAATGGACATTGACACTTTTTGATGTTAACTGTGTTGAT  499

seq1  ATTTATTTTGATGAACAGTTCTTGGCCTATACAGTTCTGAGTTCGGTCAT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTGATGAACAGTTCTTGGCCTATACAGTTCTGAGTTCGGTCAT  549

seq1  GAAGTGACTAACTGAGACAACTGTGCATCCTGCAGAAGGTGCTACACATG  589
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGACTAATTGAGACAACTGTGCATCCTGCAGAAGGTGCTACACATG  599

seq1  GAAAAGCCACACCCTTGGGCAGTGAATTGGCCTTCATAGCTACTGCCCCT  639
      ||||||||||||||||||||||||||||||||||||||| || ||||| |
seq2  GAAAAGCCACACCCTTGGGCAGTGAATTGGCCTTCATAGTTATTGCCCGT  649

seq1  TATTCATTGCCAGATTATGTGTACAGTGAGTCACAGGCACTTTTCTAAAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTGCCAGATTATGTGTACAGTGAGTCACAGGCACTTTTCTAAAT  699

seq1  ATATCAGCAGCCTGGCAAAGGGTTTGGGGACTGTATCCATCAATTACGGT  739
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  ATATCAGCAGCTTGGCAAAGGGTTTGGGGAGTGTATCCATCAATTACGGT  749

seq1  CATGGGAAAGGTCAGAATAGCACAGGCTTTCATCCTCATTCCACTGCCCT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAAAGGTCAGAATAGCACAGGCTTTCATCCTCATTCCACTGCCCT  799

seq1  CCCTACTCGACCACGGGTGTGTTGAAATACTGAGATTGTTCACTTTGAAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTCGACCACGGGTGTGTTGAAATACTGAGATTGTTCACTTTGAAG  849

seq1  CATTGTCCATTGCTGAGAACTTCTTACTGGAAATGAGCGAAATCTCTGCA  889
      |||||||||||| ||||||||||| |||||||||||||||||||| ||||
seq2  CATTGTCCATTGGTGAGAACTTCTCACTGGAAATGAGCGAAATCTTTGCA  899

seq1  AGAGGCCATGCCACTGAAAGGCCTACTTCCTCTTTCAAAAGCTTATTGTC  939
      ||||||||||||| ||||||||||||||||||||||||||||| ||||| 
seq2  AGAGGCCATGCCAGTGAAAGGCCTACTTCCTCTTTCAAAAGCTCATTGTA  949

seq1  TAATAAAAGTATCCACAGAACTTCTTCGGCGAGATACACCAACTTCATTC  989
      |||||||||||||||||||| || || |||||||||||||||||||||||
seq2  TAATAAAAGTATCCACAGAAGTTGTTGGGCGAGATACACCAACTTCATTC  999

seq1  CTTTCAAACCATCGATTGCAGTCCACAATTTCAACTGAAGAAAAGATTCT  1039
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  CTTTCAAACCATCGATTGCAGTCCACAATTTCAAAGGAAGAAAAGATTCT  1049

seq1  CTATGAAGCTGGATGCTGGCCCCATTCACTGAATTC  1075
      ||| ||||||||||||||||||||||||||||||||
seq2  CTA-GAAGCTGGATGCTGGCCCCATTCACTGAATTC  1084