BAC Information

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BAC

Clone NameB6Ng01-263I07
Chromosome12 (Build37)
Map Location 26,358,194 - 26,514,204
singlet/doubletdoublet
Overlap geneLOC668726
Upstream geneCys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974
Downstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263I07.bB6Ng01-263I07.g
ACCGA067666GA067667
length1,1881,152
definitionB6Ng01-263I07.b B6Ng01-263I07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,358,194 - 26,359,384)(26,513,044 - 26,514,204)
sequence
gaattcctcagacccctttccttgggcactgcacttttccattttattgc
tactgacttctttgattatttctaggctagccttcctgaagaccatccta
tggtacatagagagttgagatgggaaacatctatataccatcttatggta
catagagagttatactttgcattctgggaaaagaggatttaacgtggcaa
tgagatcctctgggagaagatcaaaggatatctgctggcaaatactagat
ccggagaccttggccagagagaggacatggaacacagaactgttcccgga
ggcttcctaggaagccttagggatgctccagtgtctaagaaagcagcttg
taggagtggccctggtacttatgagaagccttagggagcccacgtggact
ctagggactggctgctgactgaagataaaccagtaacttctttctctcgt
ctgcttctagagccaccaggatttctcctttggggaaaccctaggggtac
ccaagaatgccattctcctcagcatccttttcctgcatgggaaggggtga
agacaagcatcagctacctgtcacccatcccctttgctctgcctcacaca
caaaacaactcctgtcacttctggacctcacttcaggacaccttcagtgt
cacaggcttaccttacacttcctaaagagccagtctggaccttgtctttt
gtagtgaggccctcatgatgctttgatgcttccctcattgatcgtattat
gatttgtgaatattaatttgttgatttgattttttatgggtctttatact
acgggacaggtattcagcttgctttttctactatttatctaatttctagc
acgcctgaataaattcttttttttttctttaatattttttattacgtatt
ttcctcaattacattttcaatgctatcccaaaagtcccccataccctccc
cccactccctacccacccattcccattttttggccctggcattcccctgt
actggggcatataagtttgccttgttccaatgggccctctctttcagtga
tgggcgactaggcattctttttgatacatatgcagctagagttcaagaag
ccttcgggtactggttagtccataatgttgttgcaccttacagggtgcgg
atctctttaggctcctgaacgtttctatctccattggg
gaattccaaagcacaaacaccaatgagcttttgagagtcaaacatggaga
agagcaaaaatgaaaatccaaagatgcagggagtgagacaaagaaaaaaa
aaaaaactaatctcctactgatgcgaagacacccgtgtttcatccagcag
ccttggccttatggggcctgggaatctgaagaaaaaaaaaatgatgttac
cttaacatacccagagaggaagcagatgcctttactctacctgccagaag
tatgcaggaggacttcccacttcccaaggccctggagaaaagcagtgtgg
tgcagagaggaacatctgaatggaaggcaagctgtagcttcagaggaagg
ggtggcctgggaagtgggctctcatttgatcatttgactcagcgatctaa
agaagatggtccagagaaatatgggcaagtcaatttctccgttgtatttt
ccaggcatgtgtttaagagagttgccctgggcacgtgcactctgcctgtg
cgaaaacccctttgtctggatgactctgctcccagagtttgcatggtcag
tctctaactctcaatgcttgaggctctgagtggtcataaagataggacct
ttaagaagacaaaggatagggtatggttctattgggaaagagattccttt
gcaagcatgaaaatcagagctcagttctcagcacttattggtaaaattga
aacagccaggatggtaatatccatttgtaacacctacaatcaggaaatag
gaggattcataggctctccatggccagccagtttagcctaatcagtcagc
ctcagtccagtatgagaccctgtctcaaaatatgatgaatggcacctggg
ggacaatttctgaggttttcctctggtccctatatacacacacatactta
tacctgtgtgtgcatgcattagtgcatacacatagaaacatgccatcata
cataaattcagaatttaaatgagttacctagcatacatttgatcctctgt
gcttgcatttattatggatgactgaggacgtggtctccagagggaagacc
atgtaaggacactggggtgagcagctgctagagctaggagactagctcaa
agcagtctgccacaggtggaacatggactttccagctctagaatatgatg
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_26358194_26359384
seq2: B6Ng01-263I07.b_45_1232

seq1  GAATTCCTCAGACCCCTTTCCTTGGGCACTGCACTTTTCCATTTTATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGACCCCTTTCCTTGGGCACTGCACTTTTCCATTTTATTGC  50

seq1  TACTGACTTCTTTGATTATTTCTAGGCTAGCCTTCCTGAAGACCATCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACTTCTTTGATTATTTCTAGGCTAGCCTTCCTGAAGACCATCCTA  100

seq1  TGGTACATAGAGAGTTGAGATGGGAAACATCTATATACCATCTTATGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACATAGAGAGTTGAGATGGGAAACATCTATATACCATCTTATGGTA  150

seq1  CATAGAGAGTTATACTTTGCATTCTGGGAAAAGAGGATTTAACGTGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGAGTTATACTTTGCATTCTGGGAAAAGAGGATTTAACGTGGCAA  200

seq1  TGAGATCCTCTGGGAGAAGATCAAAGGATATCTGCTGGCAAATACTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCCTCTGGGAGAAGATCAAAGGATATCTGCTGGCAAATACTAGAT  250

seq1  CCGGAGACCTTGGCCAGAGAGAGGACATGGAACACAGAACTGTTCCCGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGACCTTGGCCAGAGAGAGGACATGGAACACAGAACTGTTCCCGGA  300

seq1  GGCTTCCTAGGAAGCCTTAGGGATGCTCCAGTGTCTAAGAAAGCAGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTAGGAAGCCTTAGGGATGCTCCAGTGTCTAAGAAAGCAGCTTG  350

seq1  TAGGAGTGGCCCTGGTACTTATGAGAAGCCTTAGGGAGCCCACGTGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTGGCCCTGGTACTTATGAGAAGCCTTAGGGAGCCCACGTGGACT  400

seq1  CTAGGGACTGGCTGCTGACTGAAGATAAACCAGTAACTTCTTTCTCTCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGACTGGCTGCTGACTGAAGATAAACCAGTAACTTCTTTCTCTCGT  450

seq1  CTGCTTCTAGAGCCACCAGGATTTCTCCTTTGGGGAAACCCTAGGGGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTAGAGCCACCAGGATTTCTCCTTTGGGGAAACCCTAGGGGTAC  500

seq1  CCAAGAATGCCATTCTCCTCAGCATCCTTTTCCTGCATGGGAAGGGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAATGCCATTCTCCTCAGCATCCTTTTCCTGCATGGGAAGGGGTGA  550

seq1  AGACAAGCATCAGCTACCTGTCACCCATCCCCTTTGCTCTGCCTCACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGCATCAGCTACCTGTCACCCATCCCCTTTGCTCTGCCTCACACA  600

seq1  CAAAACAACTCCTGTCACTTCTGGACCTCACTTCAGGACACCTTCAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAACTCCTGTCACTTCTGGACCTCACTTCAGGACACCTTCAGTGT  650

seq1  CACAGGCTTACCTTACACTTCCTAAAGAGCCAGTCTGGACCTTGTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTTACCTTACACTTCCTAAAGAGCCAGTCTGGACCTTGTCTTTT  700

seq1  GTAGTGAGGCCCTCATGATGCTTTGATGCTTCCCTCATTGATCGTATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAGGCCCTCATGATGCTTTGATGCTTCCCTCATTGATCGTATTAT  750

seq1  GATTTGTGAATATTAATTTGTTGATTTGATTTTTTATGGGTCTTTATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTGAATATTAATTTGTTGATTTGATTTTTTATGGGTCTTTATACT  800

seq1  ACGGGACAGGTATTCAGCTTGCTTTTTCTACTATTTATCTAATTTCTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGACAGGTATTCAGCTTGCTTTTTCTACTATTTATCTAATTTCTAGC  850

seq1  ACGCCTGAATAAATTC-TTTTTTTTTCTTTAATATTTTTTATTACGTATT  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACGCCTGAATAAATTCTTTTTTTTTTCTTTAATATTTTTTATTACGTATT  900

seq1  TTCCTCAATTACATTTTCAATGCTATCCCCAAAAGTCCCCCATACCCTCC  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCCTCAATTACATTTTCAATGCTAT-CCCAAAAGTCCCCCATACCCTCC  949

seq1  CCCCACTCCCCTACCCACCCATTCCCATTTTTTGGCCCTGGCATTCCCCT  999
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACT-CCCTACCCACCCATTCCCATTTTTTGGCCCTGGCATTCCCCT  998

seq1  GTACTGGGGCATATAAAGTTTGCCT--GTCCAATGGG-CCTCTCTTTCCA  1046
      |||||||||||||| ||||||||||   ||||||||| ||||||||| ||
seq2  GTACTGGGGCATAT-AAGTTTGCCTTGTTCCAATGGGCCCTCTCTTT-CA  1046

seq1  GTGATGGCCGACTAGGCCATC-TTTTGATACATATGCAGCTAGAG-TCAA  1094
      ||||||| |||||||||  || ||||||||||||||||||||||| ||||
seq2  GTGATGGGCGACTAGGCATTCTTTTTGATACATATGCAGCTAGAGTTCAA  1096

seq1  G-AGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTGCACC-TACAGGGT  1142
      | |||    |||||||||||||| ||||||||||||||||| ||||||| 
seq2  GAAGCCTTCGGGTACTGGTTAGTCCATAATGTTGTTGCACCTTACAGGG-  1145

seq1  TGCAGATCTCTTTA-GCTCCTTGAATACTTTCTCTATCTCCTCCATTGGG  1191
      ||| |||||||||| ||||| |||  || || |||||   ||||||||||
seq2  TGCGGATCTCTTTAGGCTCC-TGA--ACGTT-TCTAT---CTCCATTGGG  1188

seq1: chr12_26513044_26514204
seq2: B6Ng01-263I07.g_66_1217 (reverse)

seq1  TTCATCATATTTCTAGAAGCTGG-AAGTCCATGGTCCA-CTGTGGGCAGG  48
      ||||||||| |||||| |||||| ||||||||| |||| |||| |||| |
seq2  TTCATCATA-TTCTAG-AGCTGGAAAGTCCATGTTCCACCTGT-GGCA-G  46

seq1  GCTGCTTTTGGAGCTAGTCTCCTTGGCTTCTAGCAGCTGCTCA-CCCAGT  97
       |||||||  ||||||||||||| |   ||||||||||||||| ||||||
seq2  ACTGCTTT--GAGCTAGTCTCCTAG--CTCTAGCAGCTGCTCACCCCAGT  92

seq1  GTCTTTACATGGTCTTCCCTCTGGGAGACCACGTCCTCAGGTCATCCAAT  147
      ||| |||||||||||||||||| |||||||||||||||| ||||||| ||
seq2  GTCCTTACATGGTCTTCCCTCT-GGAGACCACGTCCTCA-GTCATCC-AT  139

seq1  AATAAATGCAAGCACAGAGGATTCAAATGTATGCTAGGTAACTCATTTAA  197
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATAAATGCAAGCACAGAGGA-TCAAATGTATGCTAGGTAACTCATTTAA  188

seq1  ATTCTGAATTTATGTATGATGGCATGTTTCTATGTGTATGCACTAATGCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAATTTATGTATGATGGCATGTTTCTATGTGTATGCACTAATGCA  238

seq1  TGCACACACAGGTATAAGTATGTGTGTGTATATAGGGACCAGAGGAAAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACAGGTATAAGTATGTGTGTGTATATAGGGACCAGAGGAAAAC  288

seq1  CTCAGAAATTGTCCCCCAGGTGCCATTCATCATATTTTGAGACAGGGTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATTGTCCCCCAGGTGCCATTCATCATATTTTGAGACAGGGTCT  338

seq1  CATACTGGACTGAGGCTGACTGATTAGGCTAAACTGGCTGGCCATGGAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGGACTGAGGCTGACTGATTAGGCTAAACTGGCTGGCCATGGAGA  388

seq1  GCCTATGAATCCTCCTATTTCCTGATTGTAGGTGTTACAAATGGATATTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGAATCCTCCTATTTCCTGATTGTAGGTGTTACAAATGGATATTA  438

seq1  CCATCCTGGCTGTTTCAATTTTACCAATAAGTGCTGAGAACTGAGCTCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTGGCTGTTTCAATTTTACCAATAAGTGCTGAGAACTGAGCTCTG  488

seq1  ATTTTCATGCTTGCAAAGGAATCTCTTTCCCAATAGAACCATACCCTATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATGCTTGCAAAGGAATCTCTTTCCCAATAGAACCATACCCTATC  538

seq1  CTTTGTCTTCTTAAAGGTCCTATCTTTATGACCACTCAGAGCCTCAAGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTCTTAAAGGTCCTATCTTTATGACCACTCAGAGCCTCAAGCA  588

seq1  TTGAGAGTTAGAGACTGACCATGCAAACTCTGGGAGCAGAGTCATCCAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGTTAGAGACTGACCATGCAAACTCTGGGAGCAGAGTCATCCAGA  638

seq1  CAAAGGGGTTTTCGCACAGGCAGAGTGCACGTGCCCAGGGCAACTCTCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGGTTTTCGCACAGGCAGAGTGCACGTGCCCAGGGCAACTCTCTT  688

seq1  AAACACATGCCTGGAAAATACAACGGAGAAATTGACTTGCCCATATTTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATGCCTGGAAAATACAACGGAGAAATTGACTTGCCCATATTTCT  738

seq1  CTGGACCATCTTCTTTAGATCGCTGAGTCAAATGATCAAATGAGAGCCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCATCTTCTTTAGATCGCTGAGTCAAATGATCAAATGAGAGCCCA  788

seq1  CTTCCCAGGCCACCCCTTCCTCTGAAGCTACAGCTTGCCTTCCATTCAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGGCCACCCCTTCCTCTGAAGCTACAGCTTGCCTTCCATTCAGA  838

seq1  TGTTCCTCTCTGCACCACACTGCTTTTCTCCAGGGCCTTGGGAAGTGGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCTCTGCACCACACTGCTTTTCTCCAGGGCCTTGGGAAGTGGGA  888

seq1  AGTCCTCCTGCATACTTCTGGCAGGTAGAGTAAAGGCATCTGCTTCCTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCCTGCATACTTCTGGCAGGTAGAGTAAAGGCATCTGCTTCCTCT  938

seq1  CTGGGTATGTTAAGGTAACATCATTTTTTTTTTCTTCAGATTCCCAGGCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTATGTTAAGGTAACATCATTTTTTTTTTCTTCAGATTCCCAGGCC  988

seq1  CCATAAGGCCAAGGCTGCTGGATGAAACACGGGTGTCTTCGCATCAGTAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGGCCAAGGCTGCTGGATGAAACACGGGTGTCTTCGCATCAGTAG  1038

seq1  GAGATTAGTTTTTTTTTTTTTCTTTGTCTCACTCCCTGCATCTTTGGATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAGTTTTTTTTTTTTTCTTTGTCTCACTCCCTGCATCTTTGGATT  1088

seq1  TTCATTTTTGCTCTTCTCCATGTTTGACTCTCAAAAGCTCATTGGTGTTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTGCTCTTCTCCATGTTTGACTCTCAAAAGCTCATTGGTGTTT  1138

seq1  GTGCTTTGGAATTC  1161
      ||||||||||||||
seq2  GTGCTTTGGAATTC  1152