BAC Information

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BAC

Clone NameB6Ng01-263M04
Chromosome12 (Build37)
Map Location 35,100,311 - 35,214,825
singlet/doubletdoublet
Overlap geneHdac9
Upstream geneTwistnb, LOC668801, LOC668806, Ferd3l, Twist1
Downstream gene4921508M14Rik, Prps1l1, Snx13, Ahr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263M04.bB6Ng01-263M04.g
ACCGA067844GA067845
length1,1301,129
definitionB6Ng01-263M04.b B6Ng01-263M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,213,680 - 35,214,825)(35,100,311 - 35,101,448)
sequence
gaattctataacctgtgttggcctcaaacgactgacctttttttatacta
aaccaaggtctatatttcagcgagtcaagatataaataggcgctggccat
ttgcacttgggtagtgggcacagaaattgattgtctgattggcaggtgca
gatgctcactgatctcacatctgtaagaatatcacgtttacaggtgaagt
gcatctggcctgtggcacagaggaaagtactgcagatctaagccacagcc
acagttggatttttatttatttatttatttatttatttatttttggtttt
aagtgtaataggaaatggctgcagtaaaattgatctaagattggtctaag
atcacattaggggtgagacggacaaatagctcgtaaacaacaacaacaac
aagaaccaacccaaaccttcataaagtttttttattctggggtgtgcttg
tttttccaaaaactacctctgctaagtctcctgtcagtgctgaaactaga
aggcagaaaagcttctcgtcccacagccaactgcagtgtagccagagaaa
caggcaacaaaaatagatcaccaggattgctgtgcgtgggtgaggcagaa
accacattatgagcaaaagcttccagtattattttagaaccaatacagct
ctgcacttctctgctctctcttccaaaaacacatactacagaaataaaat
gaaatgaaatgtgtgtgcactctccctccttgagttagaattcggctcct
ttttctcttgatttcctttccttggaggtgagatgccagtgtgaaaagcc
aacatgtaacgcaagttgagggaggaaagagttaattgcttttaaggccc
tgcaatagagaattatggtttgaaagatagaggctggacagctggctttg
gtggggtatttttaaatgcattaatgcagctgcaatcactcgggccatgc
ttgacctattttggctcaggccgaccattgttctatttctgtgcctgtgg
catgctgttgtgattcatatgcaatgatatcactagctttagcacttgag
ctgagagagactgaaaggtagaagagagacgcacagacgatagaagaccc
ctctggagccactgcaggctgagatctctc

gaattcagagcctgagagaaagaaagagaagccaagaatgcctaaaacaa
atcatcacacaaactcataaaaccaaaacctaatgatttggagctgctga
aagttccggggttcctttttgaatattgatctgggcataaaattgaaaca
actccaggtttgataccaaaagcaagaagacaaatgttacatcctttatg
agagagtttggaaatagtattaaagtaggtcaaccagaaggctcggacaa
tgctcacatttcttaaggcaatggttaagtaaagccttttagaatcatac
tctgagcaaattggaaccaaagactatctcttcatccactctatgttctt
gatataaccaaaacttcttgtttagcccaagtgctgaatgaaaagtttgc
tttcatttccctggtttcccattttattcaggaaatatttgaatgggtga
actatgaaacgactctatttgagtagcttgtattagaagattgattggta
aagaaattctcatctccatctcccatttaactatatgtaaaatatatgta
atgccttggactatgcattctaatataatttctacaacaaggttgaacaa
tactttctaaccagtttaaagtctcaacctgtaacatgggaaaatttcaa
actcacaagctcattgcagtactttatctttttgatagaaagaggggtat
ggctgagacctacaaacagtcatagttttcctacaggcactcccttctct
tactgaactgggtattttcctgtgacctcatatgattcatctcttggatg
ccctgagtaggattgctaaattctaaaattgactccatgattttaaagga
agcttgtaatgctaccatgtcacctctgtgtttctgagactttgtttctc
ttcctgcattctgcacctcaggctttcatcagtgggatcctatattgtgt
tttcctaccgaatttggatccctgaacacagcctaattgtgcaagaccat
cctaatgctactcttttctcttctaggctgcttataactcattttttgtg
tgtttgcattaggtagtacatcatttctccaaaggagcaataatatatag
tataatcttaagaaggtcattttccctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35213680_35214825
seq2: B6Ng01-263M04.b_44_1173 (reverse)

seq1  GAGAGATCCTCAGCCTGCAAGTGGCTCCAGAGGGTGTCCTCCTATCTGTC  50
      ||||||| |||||||||| ||||||||||||||| || || ||||| |||
seq2  GAGAGAT-CTCAGCCTGC-AGTGGCTCCAGAGGG-GT-CTTCTATC-GTC  45

seq1  TGTGCGTCTCTCTCTTCCCTTTCTCAGTCTCTCTCAGCTCAAGTTGGCTA  100
      |||||||||||||  | ||||  |||||||||||||||||||||  ||||
seq2  TGTGCGTCTCTCTTCTACCTT--TCAGTCTCTCTCAGCTCAAGT--GCTA  91

seq1  AAGCTAGTGATAATCCATTTGCATATGAATCAACAACAGCATGGCCCACA  150
      ||||||||||| |||   ||||||||||||| |||||||||||  |||||
seq2  AAGCTAGTGAT-ATC--ATTGCATATGAATC-ACAACAGCATG--CCACA  135

seq1  GGCACAGAAATAGAACAATGGTCGGCCTGAGCCAAAAATAGGTCAAGCAT  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGCACAGAAATAGAACAATGGTCGGCCTGAGCC-AAAATAGGTCAAGCAT  184

seq1  GG-CCGAGTGATTGCAGCCTGCATTAATGCATTTAAAAATACCCCACCAA  249
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGCCCGAGTGATTGCAG-CTGCATTAATGCATTTAAAAATACCCCACCAA  233

seq1  AGCCAGCTGTCCAGCCTCTATCTTTCAAACCATAATTCTCTATTGCAGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTGTCCAGCCTCTATCTTTCAAACCATAATTCTCTATTGCAGGG  283

seq1  CCTTAAAAGCAATTAACTCTTTCCTCCCTCAACTTGCGTTACATGTTGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAAGCAATTAACTCTTTCCTCCCTCAACTTGCGTTACATGTTGGC  333

seq1  TTTTCACACTGGCATCTCACCTCCAAGGAAAGGAAATCAAGAGAAAAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACACTGGCATCTCACCTCCAAGGAAAGGAAATCAAGAGAAAAAGG  383

seq1  AGCCGAATTCTAACTCAAGGAGGGAGAGTGCACACACATTTCATTTCATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGAATTCTAACTCAAGGAGGGAGAGTGCACACACATTTCATTTCATT  433

seq1  TTATTTCTGTAGTATGTGTTTTTGGAAGAGAGAGCAGAGAAGTGCAGAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTGTAGTATGTGTTTTTGGAAGAGAGAGCAGAGAAGTGCAGAGC  483

seq1  TGTATTGGTTCTAAAATAATACTGGAAGCTTTTGCTCATAATGTGGTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGGTTCTAAAATAATACTGGAAGCTTTTGCTCATAATGTGGTTTC  533

seq1  TGCCTCACCCACGCACAGCAATCCTGGTGATCTATTTTTGTTGCCTGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCACCCACGCACAGCAATCCTGGTGATCTATTTTTGTTGCCTGTTT  583

seq1  CTCTGGCTACACTGCAGTTGGCTGTGGGACGAGAAGCTTTTCTGCCTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTACACTGCAGTTGGCTGTGGGACGAGAAGCTTTTCTGCCTTCT  633

seq1  AGTTTCAGCACTGACAGGAGACTTAGCAGAGGTAGTTTTTGGAAAAACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGCACTGACAGGAGACTTAGCAGAGGTAGTTTTTGGAAAAACAA  683

seq1  GCACACCCCAGAATAAAAAAACTTTATGAAGGTTTGGGTTGGTTCTTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCCCAGAATAAAAAAACTTTATGAAGGTTTGGGTTGGTTCTTGTT  733

seq1  GTTGTTGTTGTTTACGAGCTATTTGTCCGTCTCACCCCTAATGTGATCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTTACGAGCTATTTGTCCGTCTCACCCCTAATGTGATCTT  783

seq1  AGACCAATCTTAGATCAATTTTACTGCAGCCATTTCCTATTACACTTAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAATCTTAGATCAATTTTACTGCAGCCATTTCCTATTACACTTAAA  833

seq1  ACCAAAAATAAATAAATAAATAAATAAATAAATAAAAATCCAACTGTGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAATAAATAAATAAATAAATAAATAAATAAAAATCCAACTGTGGC  883

seq1  TGTGGCTTAGATCTGCAGTACTTTCCTCTGTGCCACAGGCCAGATGCACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTAGATCTGCAGTACTTTCCTCTGTGCCACAGGCCAGATGCACT  933

seq1  TCACCTGTAAACGTGATATTCTTACAGATGTGAGATCAGTGAGCATCTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGTAAACGTGATATTCTTACAGATGTGAGATCAGTGAGCATCTGC  983

seq1  ACCTGCCAATCAGACAATCAATTTCTGTGCCCACTACCCAAGTGCAAATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCAATCAGACAATCAATTTCTGTGCCCACTACCCAAGTGCAAATG  1033

seq1  GCCAGCGCCTATTTATATCTTGACTCGCTGAAATATAGACCTTGGTTTAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCGCCTATTTATATCTTGACTCGCTGAAATATAGACCTTGGTTTAG  1083

seq1  TATAAAAAAAGGTCAGTCGTTTGAGGCCAACACAGGTTATAGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAAAAGGTCAGTCGTTTGAGGCCAACACAGGTTATAGAATTC  1130


seq1: chr12_35100311_35101448
seq2: B6Ng01-263M04.g_67_1195

seq1  GAATTCAGAGCCTGAGAGAAAGAAAGAGAAGCCAAGAATGCCTAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCCTGAGAGAAAGAAAGAGAAGCCAAGAATGCCTAAAACAA  50

seq1  ATCATCACACAAACTCATAAAACCAAAACCTAATGATTTGGAGCTGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCACACAAACTCATAAAACCAAAACCTAATGATTTGGAGCTGCTGA  100

seq1  AAGTTCCGGGGTTCCTTTTTGAATATTGATCTGGGCATAAAATTGAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCGGGGTTCCTTTTTGAATATTGATCTGGGCATAAAATTGAAACA  150

seq1  ACTCCAGGTTTGATACCAAAAGCAAGAAGACAAATGTTACATCCTTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGTTTGATACCAAAAGCAAGAAGACAAATGTTACATCCTTTATG  200

seq1  AGAGAGTTTGGAAATAGTATTAAAGTAGGTCAACCAGAAGGCTCGGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTTGGAAATAGTATTAAAGTAGGTCAACCAGAAGGCTCGGACAA  250

seq1  TGCTCACATTTCTTAAGGCAATGGTTAAGTAAAGCCTTTTAGAATCATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACATTTCTTAAGGCAATGGTTAAGTAAAGCCTTTTAGAATCATAC  300

seq1  TCTGAGCAAATTGGAACCAAAGACTATCTCTTCATCCACTCTATGTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCAAATTGGAACCAAAGACTATCTCTTCATCCACTCTATGTTCTT  350

seq1  GATATAACCAAAACTTCTTGTTTAGCCCAAGTGCTGAATGAAAAGTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAACCAAAACTTCTTGTTTAGCCCAAGTGCTGAATGAAAAGTTTGC  400

seq1  TTTCATTTCCCTGGTTTCCCATTTTATTCAGGAAATATTTGAATGGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCCCTGGTTTCCCATTTTATTCAGGAAATATTTGAATGGGTGA  450

seq1  ACTATGAAACGACTCTATTTGAGTAGCTTGTATTAGAAGATTGATTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAAACGACTCTATTTGAGTAGCTTGTATTAGAAGATTGATTGGTA  500

seq1  AAGAAATTCTCATCTCCATCTCCCATTTAACTATATGTAAAATATATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTCTCATCTCCATCTCCCATTTAACTATATGTAAAATATATGTA  550

seq1  ATGCCTTGGACTATGCATTCTAATATAATTTCTACAACAAGGTTGAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTGGACTATGCATTCTAATATAATTTCTACAACAAGGTTGAACAA  600

seq1  TACTTTCTAACCAGTTTAAAGTCTCAACCTGTAACATGGGAAAATTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTAACCAGTTTAAAGTCTCAACCTGTAACATGGGAAAATTTCAA  650

seq1  ACTCACAAGCTCATTGCAGTACTTTATCTTTTTGATAGAAAGAGGGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAAGCTCATTGCAGTACTTTATCTTTTTGATAGAAAGAGGGGTAT  700

seq1  GGCTGAGACCTACAAACAGTCATAGTTTTCCTACAGGCACTCCCTTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGACCTACAAACAGTCATAGTTTTCCTACAGGCACTCCCTTCTCT  750

seq1  TACTGAACTGGGTATTTTCCTGTGACCTCATATGATTCATCTCTTGGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAACTGGGTATTTTCCTGTGACCTCATATGATTCATCTCTTGGATG  800

seq1  CCCTGAGTAGGATTGCTAAATTCTAAAATTGACTCCATGATTTTAAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTAGGATTGCTAAATTCTAAAATTGACTCCATGATTTTAAAGGA  850

seq1  AGCTTGTAATGCTACCATGTCACCTCTGTGTTTCTGAGACTTTGTTTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTAATGCTACCATGTCACCTCTGTGTTTCTGAGACTTTGTTTCTC  900

seq1  TTCCTGCATTCTGCACCTCAGGCTTTCATCAGT-GGATCCTATATTGTGT  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTCCTGCATTCTGCACCTCAGGCTTTCATCAGTGGGATCCTATATTGTGT  950

seq1  TTTCCTACCGAATTTGGATCCCTGAACACAAGCCTAATTGTGC-AGACCA  998
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  TTTCCTACCGAATTTGGATCCCTGAACAC-AGCCTAATTGTGCAAGACCA  999

seq1  TCCCTAATGCCTACTCTTTTCTCTTCTAGGCTGCTTATAAACTCATTTTT  1048
      | ||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  T-CCTAATG-CTACTCTTTTCTCTTCTAGGCTGCTTAT-AACTCATTTTT  1046

seq1  TGTGTGTTTGCAATAAGTAGGTACATCATTTCTTCAAAAGAGCAAATAAT  1098
      |||||||||||| || ||| ||||||||||||| |||| |||| ||||||
seq2  TGTGTGTTTGCATTAGGTA-GTACATCATTTCTCCAAAGGAGC-AATAAT  1094

seq1  ATTATAGTAATAAATCCTAAGAGAAGTCATTTTTCCCTGA  1138
      | |||||||   |||| ||||| | |||| ||||||||||
seq2  A-TATAGTA--TAATCTTAAGA-AGGTCA-TTTTCCCTGA  1129


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