BAC Information

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BAC

Clone NameB6Ng01-264D22
Chromosome12 (Build37)
Map Location 48,512,873 - 48,514,035
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664952, Nova1, LOC100039190
Downstream geneEG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264D22.bB6Ng01-264D22.g
ACCGA068198GA068199
length1,1961,172
definitionB6Ng01-264D22.b B6Ng01-264D22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcatccaaacgctgacaccattgcatatactagcaagattttatcgaaag
gacccagatgtagctgtctcttgtgagactatgccgggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccaa
tggaggagctagagaaagtacccaaggagctaaagggatcttcaacctat
aggtggaacaacatttatgactaacagtaccctggagctcttgactctag
ctgcaatatgtatcaaagatggcctagttcgcaatcactgggaaagagag
ccaatttgaacacgcagactttgtggtgctcggtacagggaacgctagca
cggggggaagtggttggctatgtactactcgccttcatctcattac
gaattcttaaatgacttgtacttaatgaaaattattttaatattattttt
taagatggtttcatttaggatgttttgtatttatagggataagtgatctc
ttaatatttctcctgtatttgagagtgttacaaatatatggcaacttaaa
taaatggttttcattgtctttacattgcatataaaccaaccacgatttta
tgcataatttgagatttaaccatgttcatgatcctgtggagctattgaca
tcactaattgcagtcgatgggattcacttacaatggtgttgggtatcttt
ggggttcttgatttgaggcatgaaattctaagtgataggttttaaatatt
cttacaaatttatgcactggtaaataacacagcttctttttgtaagaaag
tggtactaaagtcattggattaaaagaggaagttcaaggattctcttgtc
tattcattatccaatagcctagagactgaactgcagtgctgagaggcaag
ttgggatttttaactcggtatgccaatatggcaaatgtccagaagatgat
cacaaaacagctgttttcctccataactgggtgaattatcgtgcatagtg
gagccaacaaaccgattagcatttgtgcaagaggttcttttgccaaccag
ggagcaagcatcagaagcatgggctttgaaagcctacgcatagtttaatt
ttcaccacaccaaaaggctgtcctttaagaattgttaaatcccccatgtg
aaggacttaatatggtgatcaacatgcatctctgaagaaagggagggaac
tttcataaaataccgttgtaaaggtttatagcatggctttagagttctgt
ttatatagtatagatatagttttcaaaaaagatatagtaataaagtccat
tggtacttaatattccaacatttttcttgattaagcatgtccttttagga
cagttgtactcctgaattaagatgggacctagaactcattattggtagtc
aagcatcttgaatttcacagttacctcccattcctgccatggcccttcaa
gttgtaggatttcaggcatagccggaatttccatccttttaaccctacaa
cttacttctgtgatctaatttggtgcaaaaattagagaaaaatattactt
gttgcaatgttcgcccaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_48512873_48514035
seq2: B6Ng01-264D22.g_70_1241

seq1  GAATTCTTAAATGACTTGTACTTAATGAAAATTATTTTAATATTATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAATGACTTGTACTTAATGAAAATTATTTTAATATTATTTTT  50

seq1  TAAGATGGTTTCATTTAGGATGTTTTGTATTTATAGGGATAAGTGATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGTTTCATTTAGGATGTTTTGTATTTATAGGGATAAGTGATCTC  100

seq1  TTAATATTTCTCCTGTATTTGAGAGTGTTACAAATATATGGCAACTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTTCTCCTGTATTTGAGAGTGTTACAAATATATGGCAACTTAAA  150

seq1  TAAATGGTTTTCATTGTCTTTACATTGCATATAAACCAACCACGATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGTTTTCATTGTCTTTACATTGCATATAAACCAACCACGATTTTA  200

seq1  TGCATAATTTGAGATTTAACCATGTTCATGATCCTGTGGAGCTATTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAATTTGAGATTTAACCATGTTCATGATCCTGTGGAGCTATTGACA  250

seq1  TCACTAATTGCAGTCGATGGGATTCACTTACAATGGTGTTGGGTATCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAATTGCAGTCGATGGGATTCACTTACAATGGTGTTGGGTATCTTT  300

seq1  GGGGTTCTTGATTTGAGGCATGAAATTCTAAGTGATAGGTTTTAAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCTTGATTTGAGGCATGAAATTCTAAGTGATAGGTTTTAAATATT  350

seq1  CTTACAAATTTATGCACTGGTAAATAACACAGCTTCTTTTTGTAAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAATTTATGCACTGGTAAATAACACAGCTTCTTTTTGTAAGAAAG  400

seq1  TGGTACTAAAGTCATTGGATTAAAAGAGGAAGTTCAAGGATTCTCTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTAAAGTCATTGGATTAAAAGAGGAAGTTCAAGGATTCTCTTGTC  450

seq1  TATTCATTATCCAATAGCCTAGAGACTGAACTGCAGTGCTGAGAGGCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTATCCAATAGCCTAGAGACTGAACTGCAGTGCTGAGAGGCAAG  500

seq1  TTGGGATTTTTAACTCGGTATGCCAATATGGCAAATGTCCAGAAGATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTTTTAACTCGGTATGCCAATATGGCAAATGTCCAGAAGATGAT  550

seq1  CACAAAACAGCTGTTTTCCTCCATAACTGGGTGAATTATCGTGCATAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACAGCTGTTTTCCTCCATAACTGGGTGAATTATCGTGCATAGTG  600

seq1  GAGCCAACAAACCGATTAGCATTTGTGCAAGAGGTTCTTTTGCCAACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAACAAACCGATTAGCATTTGTGCAAGAGGTTCTTTTGCCAACCAG  650

seq1  GGAGCAAGCATCAGAAGCATGGGCTTTGAAAGCCTACGCATAGTTTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAGCATCAGAAGCATGGGCTTTGAAAGCCTACGCATAGTTTAATT  700

seq1  TTCACCACACCAAAAGGCTGTCCTTTAAGAATTGTTAAATCCCCCATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCACACCAAAAGGCTGTCCTTTAAGAATTGTTAAATCCCCCATGTG  750

seq1  AAGGACTTAATATGGTGATCAACATGCATCTCTGAAGAAAGGGAGGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTTAATATGGTGATCAACATGCATCTCTGAAGAAAGGGAGGGAAC  800

seq1  TTTCATAAAATACCGTTGTAAAGGTTTATAGCATGGCTTTAGAGTTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAAATACCGTTGTAAAGGTTTATAGCATGGCTTTAGAGTTCTGT  850

seq1  TTATATAGTATAGATATAGTTTTCAAAAAAGATATAGTAATAAAGTCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGTATAGATATAGTTTTCAAAAAAGATATAGTAATAAAGTCCAT  900

seq1  TGGTACTTAAATATTCCAACA-TTTTCTTGATTAAGCATGTCCTTTTAGG  949
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  TGGTACTT-AATATTCCAACATTTTTCTTGATTAAGCATGTCCTTTTAGG  949

seq1  ACAGTTGTACT-CTGAATTAAGAT-GGACCTAGAACTCATTATT-GTAGT  996
      ||||||||||| |||||||||||| ||||||||||||||||||| |||||
seq2  ACAGTTGTACTCCTGAATTAAGATGGGACCTAGAACTCATTATTGGTAGT  999

seq1  CAAAGCATCTTGAA-TTCACAGT--ACTCC--ATCCTGCCATGG-CCTTC  1040
      | |||||||||||| ||||||||   ||||   ||||||||||| |||||
seq2  C-AAGCATCTTGAATTTCACAGTTACCTCCCATTCCTGCCATGGCCCTTC  1048

seq1  AAGGTTGTAGGATTTCAGGCATTAGCCGG-ATTTTCATCTTTTAAAACCT  1089
      || |||||||||||||||||| ||||||| |||| |||| ||| || |||
seq2  AA-GTTGTAGGATTTCAGGCA-TAGCCGGAATTTCCATCCTTTTAACCCT  1096

seq1  ACAACTTTATTTCTGTGATCTA--TTTGTGAAAAATATTAGAGAAATATA  1137
      ||||| ||| ||||||||||||  || ||| |||| |||||||||| |||
seq2  ACAAC-TTACTTCTGTGATCTAATTTGGTGCAAAA-ATTAGAGAAAAATA  1144

seq1  TTACTTTTTGCCATGTTCG--CAATATA  1163
      |||||| |||| |||||||  |||||||
seq2  TTACTTGTTGCAATGTTCGCCCAATATA  1172