BAC Information

Click to search

BAC

Clone NameB6Ng01-265A24
Chromosome12 (Build37)
Map Location 61,840,684 - 61,841,827
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622488, LOC665665, Ppia-ps12_475.1
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265A24.bB6Ng01-265A24.g
ACCGA068810GA068811
length1,134923
definitionB6Ng01-265A24.b B6Ng01-265A24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatattatgatatttatagacttccaaaagtaagtacacgcttat
atgaaaaagtaggattttcagaagacaaactaaggatgttgtttaggcaa
aaagtgactatactcttgggcttatctctagcctctatctgtaccacagc
aatgagcataacaatgtacctctatcaagccaggaccaagcaacagacaa
cagcaacagaaaagctgttttcaggttagattttgtgtacatttgtgtgc
atctgcaatcatggtgagggcattcagtgctctttgaagcgatgaaacca
gtagtttagcacataatacttcttctttttctcattcatgtggctttgcc
ccatacctctttcccctatatcattgagtcttaattcttccatatttctt
acccacagtcagaatacagcaactgtatatactacacaaataccctctaa
ctcacagtattctccctattcttagaaaacacaaggaacattggaaacaa
agattttgagaagattttccaccttcactgtttccatgcaatcatgagat
gtggctattatgcagataggacccattttctatgaattttcactgtcttt
caattgagtatatcaaccttctatttcatgaggctaccatgaacaagcaa
gaagaatcaatagtaacactgtgttaggtgagttggcaagtatgagccaa
caatgtgttcaagtagtttctgtatgccctttaatcacattcacactcag
gtctagatgtaacttttcattcttctagttcatttccatgttttcatagt
tttagagaacctgtttttacatgcaacctagactgcctggaaactcatgc
ttttattttggcctcacactctaatgtgtaaggttaacagacattacaga
tgtaagccaacacaccaagctcacacagctcaagaaaatttgctagtaaa
cattacttattaatgacttcccaatatgtcagcataaagttgatatttgc
taccatatgacactgtaaatggtattaaattgttgctgtggttagatatg
cccactttttaaagaattatatggtgaaatctgcataaagttattttgat
ttttttacaccatttgagaattttatcagcttac

gaattcttgccggtgagatactagcttgggcaagaggcactggtatagcc
tcactcgagacagctatatcagggtcctttcagcaaaatctttctggcat
atgcaatagtgtctgggtttggtggctgattatgggatggatcccaaggt
ggggtattctctggatggtccatcctttcctcttagctctgaactttgtc
tctgtaactcctgccaggggcgttttgttccctattctaaggaggaatga
attatccacactttggtcttcgtttttgattttcttgtgttttgcaaatt
gtattcttatctccttgtacaaagctcaagtctaagtggatcaaagaact
ccacataaaaccagagacactgaaatttatagaggaaaaagtggggaaaa
gtctcgaagatatgggcactgaggaaaaattcctaaacagaatatcattg
gcttgtgctgtaagatcaagaattgacaaatgagacatcatgaaattgca
aaacttctgtaaggcaaaagacaccatcaataagacaaaaacactaccaa
ccaattgtgaaagggtttttaccaatcctaagtctgatacgggactaata
tccaatatatacaaagagctcaagaagctggcctccagaaatccaaataa
cgccattaaaaagggaaacaacacccttctcaatagtcacaaaataatat
aaaatacctttggcgtgactctaactaaggaagtgaaagatctttatgat
aagaacttcaaatctctaaagaaaagacatttaagaagatctcagaagat
ggaaagatctcccatgcttcattggattggcaggatcaaacatttgtaaa
aaattgcttaatctttgcaaaaagcaatctaacagatttcaaatgcaaat
cccccaatcaaattccagctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_61840684_61841827
seq2: B6Ng01-265A24.b_47_1180 (reverse)

seq1  GTAAGCTGAATAAAAATCTCAAATGTGTAAAAAAAAAACAAAATAACTTT  50
      |||||||| |||||| ||||||||| ||  ||||||| ||||||||||||
seq2  GTAAGCTG-ATAAAATTCTCAAATG-GTGTAAAAAAATCAAAATAACTTT  48

seq1  TAATGCAGGATTTTCACCATATAATTCTTTAAAAAGTGGGCATAATCTTA  100
        ||||||   |||||||||||||||||||||||||||||||| ||| ||
seq2  --ATGCAG--ATTTCACCATATAATTCTTTAAAAAGTGGGCAT-ATC-TA  92

seq1  ACCACAGCAACAAATTTAATACCATTTACAGTGTCATATGGTAGCAAATA  150
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCAAC-AATTTAATACCATTTACAGTGTCATATGGTAGCAAATA  141

seq1  TCAACTTTATGCCTGACATATTGGGAAGTCATTAATAAGTAATGTTTACT  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTATG-CTGACATATTGGGAAGTCATTAATAAGTAATGTTTACT  190

seq1  AGCAAATTTTCTTGAGCTGTGTGAGCTTGGTGTGTTGGCTTACATCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTTTCTTGAGCTGTGTGAGCTTGGTGTGTTGGCTTACATCTGTA  240

seq1  ATGTCTGTTAACCTTACACATTAGAGTGTGAGGCCAAAATAAAAGCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTTAACCTTACACATTAGAGTGTGAGGCCAAAATAAAAGCATGA  290

seq1  GTTTCCAGGCAGTCTAGGTTGCATGTAAAAACAGGTTCTCTAAAACTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGGCAGTCTAGGTTGCATGTAAAAACAGGTTCTCTAAAACTATG  340

seq1  AAAACATGGAAATGAACTAGAAGAATGAAAAGTTACATCTAGACCTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGGAAATGAACTAGAAGAATGAAAAGTTACATCTAGACCTGAGT  390

seq1  GTGAATGTGATTAAAGGGCATACAGAAACTACTTGAACACATTGTTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTGATTAAAGGGCATACAGAAACTACTTGAACACATTGTTGGCT  440

seq1  CATACTTGCCAACTCACCTAACACAGTGTTACTATTGATTCTTCTTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTGCCAACTCACCTAACACAGTGTTACTATTGATTCTTCTTGCTT  490

seq1  GTTCATGGTAGCCTCATGAAATAGAAGGTTGATATACTCAATTGAAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGGTAGCCTCATGAAATAGAAGGTTGATATACTCAATTGAAAGAC  540

seq1  AGTGAAAATTCATAGAAAATGGGTCCTATCTGCATAATAGCCACATCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAATTCATAGAAAATGGGTCCTATCTGCATAATAGCCACATCTCA  590

seq1  TGATTGCATGGAAACAGTGAAGGTGGAAAATCTTCTCAAAATCTTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCATGGAAACAGTGAAGGTGGAAAATCTTCTCAAAATCTTTGTTT  640

seq1  CCAATGTTCCTTGTGTTTTCTAAGAATAGGGAGAATACTGTGAGTTAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTTCCTTGTGTTTTCTAAGAATAGGGAGAATACTGTGAGTTAGAG  690

seq1  GGTATTTGTGTAGTATATACAGTTGCTGTATTCTGACTGTGGGTAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTGTGTAGTATATACAGTTGCTGTATTCTGACTGTGGGTAAGAAA  740

seq1  TATGGAAGAATTAAGACTCAATGATATAGGGGAAAGAGGTATGGGGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGAATTAAGACTCAATGATATAGGGGAAAGAGGTATGGGGCAAA  790

seq1  GCCACATGAATGAGAAAAAGAAGAAGTATTATGTGCTAAACTACTGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATGAATGAGAAAAAGAAGAAGTATTATGTGCTAAACTACTGGTTT  840

seq1  CATCGCTTCAAAGAGCACTGAATGCCCTCACCATGATTGCAGATGCACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCTTCAAAGAGCACTGAATGCCCTCACCATGATTGCAGATGCACAC  890

seq1  AAATGTACACAAAATCTAACCTGAAAACAGCTTTTCTGTTGCTGTTGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACACAAAATCTAACCTGAAAACAGCTTTTCTGTTGCTGTTGTCT  940

seq1  GTTGCTTGGTCCTGGCTTGATAGAGGTACATTGTTATGCTCATTGCTGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTGGTCCTGGCTTGATAGAGGTACATTGTTATGCTCATTGCTGTG  990

seq1  GTACAGATAGAGGCTAGAGATAAGCCCAAGAGTATAGTCACTTTTTGCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGATAGAGGCTAGAGATAAGCCCAAGAGTATAGTCACTTTTTGCCT  1040

seq1  AAACAACATCCTTAGTTTGTCTTCTGAAAATCCTACTTTTTCATATAAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACATCCTTAGTTTGTCTTCTGAAAATCCTACTTTTTCATATAAGC  1090

seq1  GTGTACTTACTTTTGGAAGTCTATAAATATCATAATATGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTTACTTTTGGAAGTCTATAAATATCATAATATGAATTC  1134


| Home | SequenceCutter | Blast | Download |