BAC Information

Click to search

BAC

Clone NameB6Ng01-265D24
Chromosome12 (Build37)
Map Location 45,365,123 - 45,477,849
singlet/doubletdoublet
Overlap genePnpla8, Nrcam
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062
Downstream geneEG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265D24.bB6Ng01-265D24.g
ACCGA068948GA068949
length1,1691,128
definitionB6Ng01-265D24.b B6Ng01-265D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,365,123 - 45,366,299)(45,476,713 - 45,477,849)
sequence
gaattcctacagctaataaatacctttagtaaagcgtctgtatacaaaat
taactcaaaaaaaaaaatcagtagccctcatatataacaagtgataaatg
ggccaagaaagaaattaggcaaacaataccctgacaatagtcccaaataa
cttgctctaaccaagcaagtgaaaacccgatatgacaagaacttcaaatc
tttgaagaaactaaagaaatcttcagaagatgcaaagatctcccatgtgc
atggatcagtaggattagtatagtaaaactggccatccaaccaaaagcat
tctacagattcaatgcaattcctaccacaattccaacacagatcactttt
ttatttgaccaaatatctttgactttcaggaaaaacagaccactactttc
taccaacccaaacattaagaatgttgcaaagtaacatttgaaacttaaga
cagggattttgtgattttcgataacgtgcctgtctgatgttctcaacaat
acattttaaaggtgccttgatttgtctttcttttgttctgtaattataaa
aacttcatgaaactgtctctactttggaacattatatttgagacaaatga
atttctaaggccctgggcagcagtgtttggctccaggatatattatcttt
tatttcttttgaggtgggctgcttttatgtaaacacagttccttatcaaa
cttctcatagcctcctccttctatctttatttttaaaatttatttatttt
tttttatatgtgaatacactatcattgtcttcagacacacaagaagagga
cttcagagtctattgcagatggttgtgagccaccatgtggttgctgggaa
ttgaactctggacctctggaagagctgtaagtgctcttaaccactgagcc
atctctccagccctcctctttatattttgaatctgacctctgctatatct
tttttacaggtataggctctgtgattagactgggtctagaagactttaat
gttaagattctgttgctcagatacagtatctgcagcagctcttcccctct
agaatacccacaggaacaactactagggcagtatctgtgagcttagttaa
aagactcatagtgtcagatctctcacctgggatgatccatcaaatataag
ctataaatggccattgcat

gaattccagtcctggcttcctttggtgatgaagaagcagaagctgatgca
gaggtcatggagggatgttatttactggcttgcttttcctgacttgttca
gcttgttttttcatagaatccaagactaccagcccagagatggttccacc
cacaagggccctccccgcttgatcactaattgaaaaaataccttacagct
ggatctcatggagccatatcttcacctgaaactcctttctctgtgataac
tccagcctgtgtcaagttgacacaaaaccagccaaggaatctttcagatg
cagtgctagatgtgttagatgcagtgagccagtacatagatcatgcatat
gaatgtgagtggcacttcttaagatcctgtaactctcctaaggggactta
gactagattaaataagccattgtttaaatattgatatgtgtagaaaaaaa
ctaaacacagaaattgtaaaaatgaaattgtaaaaacacacctgctatga
ccacactgcttcatctctgattctcagagagctctatttcaatccaagag
ctgtttgctccgtttgccaaatctctgagttgggtctaggcttttaagca
agaatgtgggaaacgctgtcccagaaaattggaagcttcctgccaggggc
accatctcagtctcctgacaggtgaggctctgtgccagtgtcttcatctg
aagaaagaaaacagcgtcgtatccacaataaaacagccaggccttcttat
tagagaaaattaatattcaatatcagcttgcatgtctcaactctgttatt
aataagaagccctgactataattggtattggcacagaatacagttttgga
gcttcacccagctggaaaatgatcatgggagtacggggcttcgttccaca
cagtctcacagagggattagaagataaaagaagccaacaggctttgggga
gaattgttcttcctgagttctgaaatggccatgtggggagcagggcagag
ttgtggctgtcactgggcatggatctcctcactcctggcctgctcactca
cggggcactgccaattgaaatttcatgatgtagcacttgagtgggaacaa
gagggcgtactgatcggaatggctgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_45365123_45366299
seq2: B6Ng01-265D24.b_46_1214

seq1  GAATTCCTACAGCTAATAAATACCTTTAGTAAAGCGTCTGTATACAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACAGCTAATAAATACCTTTAGTAAAGCGTCTGTATACAAAAT  50

seq1  TAACTCAAAAAAAAAAATCAGTAGCCCTCATATATAACAAGTGATAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAAAAAAAAAAATCAGTAGCCCTCATATATAACAAGTGATAAATG  100

seq1  GGCCAAGAAAGAAATTAGGCAAACAATACCCTGACAATAGTCCCAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGAAAGAAATTAGGCAAACAATACCCTGACAATAGTCCCAAATAA  150

seq1  CTTGCTCTAACCAAGCAAGTGAAAACCCGATATGACAAGAACTTCAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCTAACCAAGCAAGTGAAAACCCGATATGACAAGAACTTCAAATC  200

seq1  TTTGAAGAAACTAAAGAAATCTTCAGAAGATGCAAAGATCTCCCATGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAAACTAAAGAAATCTTCAGAAGATGCAAAGATCTCCCATGTGC  250

seq1  ATGGATCAGTAGGATTAGTATAGTAAAACTGGCCATCCAACCAAAAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCAGTAGGATTAGTATAGTAAAACTGGCCATCCAACCAAAAGCAT  300

seq1  TCTACAGATTCAATGCAATTCCTACCACAATTCCAACACAGATCACTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGATTCAATGCAATTCCTACCACAATTCCAACACAGATCACTTTT  350

seq1  TTATTTGACCAAATATCTTTGACTTTCAGGAAAAACAGACCACTACTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGACCAAATATCTTTGACTTTCAGGAAAAACAGACCACTACTTTC  400

seq1  TACCAACCCAAACATTAAGAATGTTGCAAAGTAACATTTGAAACTTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACCCAAACATTAAGAATGTTGCAAAGTAACATTTGAAACTTAAGA  450

seq1  CAGGGATTTTGTGATTTTCGATAACGTGCCTGTCTGATGTTCTCAACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATTTTGTGATTTTCGATAACGTGCCTGTCTGATGTTCTCAACAAT  500

seq1  ACATTTTAAAGGTGCCTTGATTTGTCTTTCTTTTGTTCTGTAATTATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAAAGGTGCCTTGATTTGTCTTTCTTTTGTTCTGTAATTATAAA  550

seq1  AACTTCATGAAACTGTCTCTACTTTGGAACATTATATTTGAGACAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATGAAACTGTCTCTACTTTGGAACATTATATTTGAGACAAATGA  600

seq1  ATTTCTAAGGCCCTGGGCAGCAGTGTTTGGCTCCAGGATATATTATCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAAGGCCCTGGGCAGCAGTGTTTGGCTCCAGGATATATTATCTTT  650

seq1  TATTTCTTTTGAGGTGGGCTGCTTTTATGTAAACACAGTTCCTTATCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTTGAGGTGGGCTGCTTTTATGTAAACACAGTTCCTTATCAAA  700

seq1  CTTCTCATAGCCTCCTCCTTCTATCTTTATTTTTAAAATTTATTTA-TTT  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTCTCATAGCCTCCTCCTTCTATCTTTATTTTTAAAATTTATTTATTTT  750

seq1  TTTTTATATGTGAATACACTATCATTGTCTTCAGACACACAAGAAGAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATGTGAATACACTATCATTGTCTTCAGACACACAAGAAGAGGA  800

seq1  CTTCAGAGTCTATTGCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGTCTATTGCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAA  850

seq1  TTGAACTCTGGACCTCTGGAAGAGCTGTAAGTGCTCTTAACCACTGAGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCTGGACCTCTGGAAGAGCTGTAAGTGCTCTTAACCACTGAGCC  900

seq1  ATCTCTCCAGCCCTCCTCTTTATATTTTGAATCTGACCTCTGCTATATCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCAGCCCTCCTCTTTATATTTTGAATCTGACCTCTGCTATATCT  950

seq1  TTTTTACAGGTATAGGCTCTGTGATTAGACTGGGTCTAGAAGACTTTAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACAGGTATAGGCTCTGTGATTAGACTGGGTCTAGAAGACTTTAAT  1000

seq1  GTTAAGATTCTGTTGCTCAAGATACAGTATCTTGCAGCAGCTCTTTCCCC  1049
      |||||||||||||||||| |||||||||||| ||||||||||| ||||||
seq2  GTTAAGATTCTGTTGCTC-AGATACAGTATC-TGCAGCAGCTC-TTCCCC  1047

seq1  TCTTAGATACCCACAGGAAC-ACTACTTAGGGCAGTATCTGTGAAGCTTT  1098
      |||   |||||||||||||| ||||| |||||||||||||||| ||| ||
seq2  TCTAGAATACCCACAGGAACAACTAC-TAGGGCAGTATCTGTG-AGC-TT  1094

seq1  AGTTAAAAGACTCATAGGTGTCAAGATCTCTCACCTGGGGAATAAATCCA  1148
      |||||||||||||||| ||||| ||||||||||||||||  ||  |||  
seq2  AGTTAAAAGACTCATA-GTGTC-AGATCTCTCACCTGGG--AT-GATC--  1137

seq1  CATCAAATATA--GTATAAATGGCCA-TGCAT  1177
      |||||||||||   |||||||||||| |||||
seq2  CATCAAATATAAGCTATAAATGGCCATTGCAT  1169


seq1: chr12_45476713_45477849
seq2: B6Ng01-265D24.g_65_1192 (reverse)

seq1  CAGCAGCAAATTCGGATCAGGTACG-CCTCTTGTTCCCCAACTCCAAAGT  49
      |||||||  |||| ||||| ||||| ||||||||||||  ||||  ||||
seq2  CAGCAGC-CATTCCGATCA-GTACGCCCTCTTGTTCCC--ACTC--AAGT  44

seq1  GCTACATCATGAAATTTCAATTTGCAGTGCCCCGTGGAGGTGAGGCAGCC  99
      |||||||||||||||||||||| |||||||||||||   |||||   |||
seq2  GCTACATCATGAAATTTCAATTGGCAGTGCCCCGTG--AGTGAGCAGGCC  92

seq1  AGGAAGTGAGGAGAACCATG-CCAGTGACAGCCACAACTCTGCCCCTGCT  148
      ||| |||||||||| ||||| ||||||||||||||||||||| |||||||
seq2  AGG-AGTGAGGAGATCCATGCCCAGTGACAGCCACAACTCTG-CCCTGCT  140

seq1  CCCCACATGGCCATTTCAGAACTCAGGAAGAACAATTCTCCCCAAAGCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACATGGCCATTTCAGAACTCAGGAAGAACAATTCTCCCCAAAGCCT  190

seq1  GTTGGCTTCTTTTTATTCTTCTAATCCCTCTGTGAGACTGTGTGGAACGA  248
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  GTTGGCTTCTTTT--ATCTTCTAATCCCTCTGTGAGACTGTGTGGAACGA  238

seq1  AGCCCCGTACT-CCATGATCATTTTCCAGCTGGGTGAAGCTCCAAAACTG  297
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCGTACTCCCATGATCATTTTCCAGCTGGGTGAAGCTCCAAAACTG  288

seq1  TATTCTGTGCCAATACCAATTATAGTCAGGGCTTCTTATTAATAACAGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTGCCAATACCAATTATAGTCAGGGCTTCTTATTAATAACAGAG  338

seq1  TTGAGACATGCAAGCTGATATTGAATATTAATTTTCTCTAATAAGAAGGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACATGCAAGCTGATATTGAATATTAATTTTCTCTAATAAGAAGGC  388

seq1  CTGGCTGTTTTATTGTGGATACGACGCTGTTTTCTTTCTTCAGATGAAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTTTTATTGTGGATACGACGCTGTTTTCTTTCTTCAGATGAAGA  438

seq1  CACTGGCACAGAGCCTCACCTGTCAGGAGACTGAGATGGTGCCCCTGGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCACAGAGCCTCACCTGTCAGGAGACTGAGATGGTGCCCCTGGCA  488

seq1  GGAAGCTTCCAATTTTCTGGGACAGCGTTTCCCACATTCTTGCTTAAAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTTCCAATTTTCTGGGACAGCGTTTCCCACATTCTTGCTTAAAAG  538

seq1  CCTAGACCCAACTCAGAGATTTGGCAAACGGAGCAAACAGCTCTTGGATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACCCAACTCAGAGATTTGGCAAACGGAGCAAACAGCTCTTGGATT  588

seq1  GAAATAGAGCTCTCTGAGAATCAGAGATGAAGCAGTGTGGTCATAGCAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAGCTCTCTGAGAATCAGAGATGAAGCAGTGTGGTCATAGCAGG  638

seq1  TGTGTTTTTACAATTTCATTTTTACAATTTCTGTGTTTAGTTTTTTTCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTACAATTTCATTTTTACAATTTCTGTGTTTAGTTTTTTTCTA  688

seq1  CACATATCAATATTTAAACAATGGCTTATTTAATCTAGTCTAAGTCCCCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATCAATATTTAAACAATGGCTTATTTAATCTAGTCTAAGTCCCCT  738

seq1  TAGGAGAGTTACAGGATCTTAAGAAGTGCCACTCACATTCATATGCATGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGTTACAGGATCTTAAGAAGTGCCACTCACATTCATATGCATGA  788

seq1  TCTATGTACTGGCTCACTGCATCTAACACATCTAGCACTGCATCTGAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTACTGGCTCACTGCATCTAACACATCTAGCACTGCATCTGAAAG  838

seq1  ATTCCTTGGCTGGTTTTGTGTCAACTTGACACAGGCTGGAGTTATCACAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGGCTGGTTTTGTGTCAACTTGACACAGGCTGGAGTTATCACAG  888

seq1  AGAAAGGAGTTTCAGGTGAAGATATGGCTCCATGAGATCCAGCTGTAAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAGTTTCAGGTGAAGATATGGCTCCATGAGATCCAGCTGTAAGG  938

seq1  TATTTTTTCAATTAGTGATCAAGCGGGGAGGGCCCTTGTGGGTGGAACCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTCAATTAGTGATCAAGCGGGGAGGGCCCTTGTGGGTGGAACCA  988

seq1  TCTCTGGGCTGGTAGTCTTGGATTCTATGAAAAAACAAGCTGAACAAGTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGCTGGTAGTCTTGGATTCTATGAAAAAACAAGCTGAACAAGTC  1038

seq1  AGGAAAAGCAAGCCAGTAAATAACATCCCTCCATGACCTCTGCATCAGCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGCAAGCCAGTAAATAACATCCCTCCATGACCTCTGCATCAGCT  1088

seq1  TCTGCTTCTTCATCACCAAAGGAAGCCAGGACTGGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCTTCATCACCAAAGGAAGCCAGGACTGGAATTC  1128


| Home | SequenceCutter | Blast | Download |