BAC Information

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BAC

Clone NameB6Ng01-266A13
Chromosome12 (Build37)
Map Location 31,923,209 - 32,019,517
singlet/doubletdoublet
Overlap geneLOC100043065, EG629667, LOC100043068, Lamb1-1, Dld
Upstream geneSntg2, Tmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043514
Downstream geneLOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266A13.bB6Ng01-266A13.g
ACCGA069531GA069532
length3901,165
definitionB6Ng01-266A13.b B6Ng01-266A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,923,209 - 31,923,604)(32,018,330 - 32,019,517)
sequence
atagatgggtagatggatggatcaattgataataaattgatcgatgagta
tgactacatttgaaaaaaaaaaaaaagtcagggttccaggacttccacac
cagtaggacatttctcaaaaattgaaaatgtctaaagttcacatgttcac
tattaagttaaagtagtaaaaacatggggctggtgagatggctcagtggg
taagagcacctgactgctcttctgaaggtccgaagttcaaatcccagcaa
ccacatggtggctcacaaccacccgagatcctgatgccatcttctggtgc
atctgaaaacacctacggtgaacttacattaaataaataattaaatcaaa
aagtacatatataaattttaattaataaattagtaaaaac
gaattccagtcaataacagatttcaaactaaaattccaaagtaagttgaa
tgattacctatgttttctttttaaaaatgttatgtgcatgatatttttgg
ctctctctaaagataaaaacagacccatggtgaggcgggtatattgtaaa
ggaataactagcatttcttccctagtaatttgatcaaggttgtaaaagtg
atagtagtaaagactgtattaatcctttcaaattactaatatcttagttg
aaaatgttttatttgctattcaactatcttatttagagatgaaattttgc
tctgtggtctaggctagtcttgaactagactctagtgatcctcatagctc
tctcaggcttgagagtgttgggcattttcaataattataaatttatttta
gatactgttttgaaaataagactgtgtaaattaaatataagtaattgaat
ttttatggctcaaagattagatacttagctctggtgtctaaagagctgat
tggattgactgtaccttttggtgactaaccatagttagactatgcttctg
tggtataactaaatttcctttgctgtgtgtttccttttcctggtagtatc
tatgctattggagatgtggtcgctggtccaatgttggctcacaaagcaga
agatgaaggcatcatctgtgttgaagggatggccggcggtgctgtgcaca
ttgattataattgtgtgccatcagtgatttacacacaccccgaggttgct
tgggttggcaaatcggaagaacagttgaaagaagaggtaatcctaagggt
gggcagctttactccatcatgggcttaaactaatggcaccggtcactaga
aagcatatctttgcctttggtaactctgtagaacatttagagcttatgta
tatttggctttggaatccagccaaatggcatttatatttgcttacatttc
ttcctacactaaattttattctgtgtgccctgaacagtacttgcaggggt
tttcttccttacatttggagatgtttcactaatgcgacaaactacagatg
ctaatatatgcttctcatttatgttctcccactattgagtcaaaattgaa
atccttgctgcacagcaagcctaaaacatgctgacagattgcaatgtgaa
gattcttgaacataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_31923209_31923604
seq2: B6Ng01-266A13.b_46_441

seq1  GAATTCATAGATGGGTAGATGGATGGATCAATTGATAATAAATTGATCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGATGGGTAGATGGATGGATCAATTGATAATAAATTGATCGA  50

seq1  TGAGTATGACTACATTTGAAAAAAAAAAAAAAGTCAGGGTTCCAGGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATGACTACATTTGAAAAAAAAAAAAAAGTCAGGGTTCCAGGACTT  100

seq1  CCACACCAGTAGGACATTTCTCAAAAATTGAAAATGTCTAAAGTTCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCAGTAGGACATTTCTCAAAAATTGAAAATGTCTAAAGTTCACAT  150

seq1  GTTCACTATTAAGTTAAAGTAGTAAAAACATGGGGCTGGTGAGATGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTATTAAGTTAAAGTAGTAAAAACATGGGGCTGGTGAGATGGCTC  200

seq1  AGTGGGTAAGAGCACCTGACTGCTCTTCTGAAGGTCCGAAGTTCAAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAAGAGCACCTGACTGCTCTTCTGAAGGTCCGAAGTTCAAATCC  250

seq1  CAGCAACCACATGGTGGCTCACAACCACCCGAGATCCTGATGCCATCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCACATGGTGGCTCACAACCACCCGAGATCCTGATGCCATCTTC  300

seq1  TGGTGCATCTGAAGACAGCTACAGTGTACTTACATTAAATAAATAAATAA  350
      ||||||||||||| ||| |||| ||| ||||||||||||||||||| |||
seq2  TGGTGCATCTGAAAACACCTACGGTGAACTTACATTAAATAAATAATTAA  350

seq1  ATAAATAAATAAATAAATAAATCTTTTTTAAAAAAGTAGTAAAAAC  396
      || || || || ||| |||||| ||  |||| ||| ||||||||||
seq2  ATCAAAAAGTACATATATAAATTTTAATTAATAAATTAGTAAAAAC  396

seq1: chr12_32018330_32019517
seq2: B6Ng01-266A13.g_70_1234 (reverse)

seq1  TTATGTCCAAGAATCTTCACCATGCCATCTGTGTCAGCATTTGTTTTAGC  50
      |||||| |||||||||||||  ||| |||  ||||||||  |||||||| 
seq2  TTATGTTCAAGAATCTTCACATTGCAATC--TGTCAGCA--TGTTTTAGG  46

seq1  TCTGCTGTTTGCAGCAAAGGGGAATTTTCCAATTTTGAACTCAATACCCT  100
        |||||  ||||||||   |||   || |||||||| ||||||||    
seq2  CTTGCTG--TGCAGCAA---GGA---TTTCAATTTTG-ACTCAATA---G  84

seq1  GGGGAGAACATAAATGAG-AGCATATATTAAGCATTCTGTAAGTTTGTTC  149
       ||||||||||||||||| |||||||||| |||| ||||| |||||| ||
seq2  TGGGAGAACATAAATGAGAAGCATATATT-AGCA-TCTGT-AGTTTG-TC  130

seq1  GCATTAGTGAAACCATCTCCCAAATGTTAAGGAAGAAAACCCCCTGCAAG  199
      |||||||||||| ||||| ||||||| |||||||||||| ||||||||||
seq2  GCATTAGTGAAA-CATCT-CCAAATG-TAAGGAAGAAAA-CCCCTGCAAG  176

seq1  TAACTGTTCAGGGCACACAGAATAAAATTTAGTGTAGGAAGAAATGTAAG  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ACTGTTCAGGGCACACAGAATAAAATTTAGTGTAGGAAGAAATGTAAG  225

seq1  CAAATATAAATGCCATTTGGCTGGATTCCAAAGCCAAATATACATAAGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATAAATGCCATTTGGCTGGATTCCAAAGCCAAATATACATAAGCT  275

seq1  CT-AATGTTCTACAGAGTTACCAAAGGCAAAGATATGCTTTCTAGTGACC  348
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTTCTACAGAGTTACCAAAGGCAAAGATATGCTTTCTAGTGACC  325

seq1  GGTGCCATTAGTTTAAGCCCATGATGGAGTAAAGCTGCCCACCCTTAGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCATTAGTTTAAGCCCATGATGGAGTAAAGCTGCCCACCCTTAGGA  375

seq1  TTACCTCTTCTTTCAACTGTTCTTCCGATTTGCCAACCCAAGCAACCTCG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCTTCTTTCAACTGTTCTTCCGATTTGCCAACCCAAGCAACCTCG  425

seq1  GGGTGTGTGTAAATCACTGATGGCACACAATTATAATCAATGTGCACAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGTGTAAATCACTGATGGCACACAATTATAATCAATGTGCACAGC  475

seq1  ACCGCCGGCCATCCCTTCAACACAGATGATGCCTTCATCTTCTGCTTTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCGGCCATCCCTTCAACACAGATGATGCCTTCATCTTCTGCTTTGT  525

seq1  GAGCCAACATTGGACCAGCGACCACATCTCCAATAGCATAGATACTACCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAACATTGGACCAGCGACCACATCTCCAATAGCATAGATACTACCA  575

seq1  GGAAAAGGAAACACACAGCAAAGGAAATTTAGTTATACCACAGAAGCATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGAAACACACAGCAAAGGAAATTTAGTTATACCACAGAAGCATA  625

seq1  GTCTAACTATGGTTAGTCACCAAAAGGTACAGTCAATCCAATCAGCTCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAACTATGGTTAGTCACCAAAAGGTACAGTCAATCCAATCAGCTCTT  675

seq1  TAGACACCAGAGCTAAGTATCTAATCTTTGAGCCATAAAAATTCAATTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACCAGAGCTAAGTATCTAATCTTTGAGCCATAAAAATTCAATTAC  725

seq1  TTATATTTAATTTACACAGTCTTATTTTCAAAACAGTATCTAAAATAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTAATTTACACAGTCTTATTTTCAAAACAGTATCTAAAATAAAT  775

seq1  TTATAATTATTGAAAATGCCCAACACTCTCAAGCCTGAGAGAGCTATGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTATTGAAAATGCCCAACACTCTCAAGCCTGAGAGAGCTATGAG  825

seq1  GATCACTAGAGTCTAGTTCAAGACTAGCCTAGACCACAGAGCAAAATTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTAGAGTCTAGTTCAAGACTAGCCTAGACCACAGAGCAAAATTTC  875

seq1  ATCTCTAAATAAGATAGTTGAATAGCAAATAAAACATTTTCAACTAAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAAATAAGATAGTTGAATAGCAAATAAAACATTTTCAACTAAGAT  925

seq1  ATTAGTAATTTGAAAGGATTAATACAGTCTTTACTACTATCACTTTTACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAATTTGAAAGGATTAATACAGTCTTTACTACTATCACTTTTACA  975

seq1  ACCTTGATCAAATTACTAGGGAAGAAATGCTAGTTATTCCTTTACAATAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGATCAAATTACTAGGGAAGAAATGCTAGTTATTCCTTTACAATAT  1025

seq1  ACCCGCCTCACCATGGGTCTGTTTTTATCTTTAGAGAGAGCCAAAAATAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCCTCACCATGGGTCTGTTTTTATCTTTAGAGAGAGCCAAAAATAT  1075

seq1  CATGCACATAACATTTTTAAAAAGAAAACATAGGTAATCATTCAACTTAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACATAACATTTTTAAAAAGAAAACATAGGTAATCATTCAACTTAC  1125

seq1  TTTGGAATTTTAGTTTGAAATCTGTTATTGACTGGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATTTTAGTTTGAAATCTGTTATTGACTGGAATTC  1165