BAC Information

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BAC

Clone NameB6Ng01-266E16
Chromosome12 (Build37)
Map Location 79,417,603 - 79,553,277
singlet/doubletdoublet
Overlap geneGphn
Upstream geneFut8, LOC230765, LOC666659, EG626215
Downstream gene4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266E16.bB6Ng01-266E16.g
ACCGA069723GA069724
length1,0271,095
definitionB6Ng01-266E16.b B6Ng01-266E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,417,603 - 79,418,296)(79,552,168 - 79,553,277)
sequence
gaattcattaaccagttctaattgtttatttggtaggtactttcctctta
ggagctgattggctgttaccaagaatggagtggttgttgctaggggcatc
ttggttcctggaacaagttgtggtttttccagagactaagttcaaatgaa
agataagcttaacataagatggagtgtaatacaaaatagagtttgggtcc
cttccagttggccccagcaccgggtcaccttgggtgcagagtcggcggac
acccccaaggtccccagagcactgtccactggatcttaggacctctggtg
agtggaatacaacttctgccaggaggcaggttcgaatgccaaatatctgg
gcaacttccctgcaagaggagaggttgcctatagagagtgctctgaccac
tgaaacttaggagagagctagtctctgaggtctgcagagactaacagaat
cacaagaggaacaagctctaaccagagacaactataacaactactccaga
gattaccagatggtgagaggcaaacataagaatcttactaacagaagcca
agaccactcaccatcatcagaacacagcattcccacctcacccagtcctg
ggtaccccaacacaaccaaaaagatagacccggatttaaaagcatatctc
atgatgatggtagaggacatcaagaaactttaataactcacttaaagaaa
tacaagagaacacggctaaagagttacaagtccttaaaaaaaatataaaa
gcacaaccaaacaggtagaagtccttaaagaaaaacagaaaaacacatcc
aaacagatgagggaaatgaacaaaaccatactagacctaaaaagagaagt
agacacaataaagaaaacccaaaatgaggcaacactagagatagaaaccc
taggaaagaattctggaaccatagatgcaagcatcagaaacaggaataca
agaggatggaagagagaatctcaggtgcagaagattccatagaggacatc
ggcacaacaatcaaaggaaaatgcaaa
gaattcaaaggatgtgataatctagtgatgaactgaataaactgagcaaa
caagctgtgacccagaggtaactaataatgtaaactttgcctggaagaga
taaagttctttttttttttttttttttttttttttaagattctctaaaat
atatcatgggttttcctagaacactggatttcagtttccagagaattatt
ttattaggaaccacttttgtgcaaatctttcagtgaaatttctatttcag
atggagtatttaaggtatgttcatattatactgattttctttaggaggtt
ctgcagaagaaaattttgatcttaactatgactagatagtcctctgcatt
gctacgtttgctttgaaattataatggtatgaatcatgatgagttggtgg
aaggctgaaacacaatgtgtctatagtatggcattcttaaatacatcatc
tacaagatcttttttagatctgtgacgaatgcagttttccattgctataa
tctattttgagttagttttctattttaaaatgactggtacggtcaataac
tcattatatgtgaagacaatgctactccatagttagtttccaagagaaca
gggctttgatctgttgcatcacatggcacaatgggtaacatgcggcatat
cctcaataaatattagtggaacataaaataaacaaatgcactatctatat
ttgaaatttggctttactgcccatttgctttgtgaaataaatggaaaata
atctttctgagcttcaatatatttatgaagaaaacataactatatctttt
aagatgataaatgatgagatataagcaatctagtatataatggatattca
agaaaaagtattgttttctgtttcctattttccatttcaacttacaacct
tacagttttgattgtatcagattaacagataataaggaaaacaaatatac
ttataatcatagttgaggagcagagttgaaatatacgatttacacataat
tcaccatgaaagcactggctagtgagaaagaacattctgaatgcctctct
gacttagagagcaaagcattaaggttgtatggcagacactagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_79417603_79418296
seq2: B6Ng01-266E16.b_49_742

seq1  GAATTCATTAACCAGTTCTAATTGTTTATTTGGTAGGTACTTTCCTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAACCAGTTCTAATTGTTTATTTGGTAGGTACTTTCCTCTTA  50

seq1  GGAGCTGATTGGCTGTTACCAAGAATGGAGTGGTTGTTGCTAGGGGCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGATTGGCTGTTACCAAGAATGGAGTGGTTGTTGCTAGGGGCATC  100

seq1  TTGGTTCCTGGAACAAGTTGTGGTTTTTCCAGAGACTAAGTTCAAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCCTGGAACAAGTTGTGGTTTTTCCAGAGACTAAGTTCAAATGAA  150

seq1  AGATAAGCTTAACATAAGATGGAGTGTAATACAAAATAGAGTTTGGGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGCTTAACATAAGATGGAGTGTAATACAAAATAGAGTTTGGGTCC  200

seq1  CTTCCAGTTGGCCCCAGCACCGGGTCACCTTGGGTGCAGAGTCGGCGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTTGGCCCCAGCACCGGGTCACCTTGGGTGCAGAGTCGGCGGAC  250

seq1  ACCCCCAAGGTCCCCAGAGCACTGTCCACTGGATCTTAGGACCTCTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAAGGTCCCCAGAGCACTGTCCACTGGATCTTAGGACCTCTGGTG  300

seq1  AGTGGAATACAACTTCTGCCAGGAGGCAGGTTCGAATGCCAAATATCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAATACAACTTCTGCCAGGAGGCAGGTTCGAATGCCAAATATCTGG  350

seq1  GCAACTTCCCTGCAAGAGGAGAGGTTGCCTATAGAGAGTGCTCTGACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTCCCTGCAAGAGGAGAGGTTGCCTATAGAGAGTGCTCTGACCAC  400

seq1  TGAAACTTAGGAGAGAGCTAGTCTCTGAGGTCTGCAGAGACTAACAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTAGGAGAGAGCTAGTCTCTGAGGTCTGCAGAGACTAACAGAAT  450

seq1  CACAAGAGGAACAAGCTCTAACCAGAGACAACTATAACAACTACTCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGGAACAAGCTCTAACCAGAGACAACTATAACAACTACTCCAGA  500

seq1  GATTACCAGATGGTGAGAGGCAAACATAAGAATCTTACTAACAGAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACCAGATGGTGAGAGGCAAACATAAGAATCTTACTAACAGAAGCCA  550

seq1  AGACCACTCACCATCATCAGAACACAGCATTCCCACCTCACCCAGTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACTCACCATCATCAGAACACAGCATTCCCACCTCACCCAGTCCTG  600

seq1  GGTACCCCAACACAACCAAAAAGATAGACCCGGATTTAAAAGCATATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCCAACACAACCAAAAAGATAGACCCGGATTTAAAAGCATATCTC  650

seq1  ATGATGATGGTAGAGGACATCAAGAAACTTTAATAACTCACTTA  694
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATGGTAGAGGACATCAAGAAACTTTAATAACTCACTTA  694

seq1: chr12_79552168_79553277
seq2: B6Ng01-266E16.g_65_1159 (reverse)

seq1  TTTCTAGTGTCTTCCCAATACACACCTTAATTGGCTTTTGCTCTCTAAAG  50
      |||||||||||| ||  ||||| ||||||||  || ||||||||||||  
seq2  TTTCTAGTGTCTGCC--ATACA-ACCTTAAT--GC-TTTGCTCTCTAA--  42

seq1  GTCAGAGAGCATTTCAGAATTGTTCCTTTCCTTCACTAGCCAGTGCTTTC  100
      |||||||||   ||||||| |||| |||||  ||||||||||||||||||
seq2  GTCAGAGAGGCATTCAGAA-TGTT-CTTTC--TCACTAGCCAGTGCTTTC  88

seq1  ATGGTTGAATTATTGTTGTAAATTCCGTATTATTTCAACTCTGCTTCTCA  150
      |||| ||||||||   |||||||  |||| ||||||||||||||| ||||
seq2  ATGG-TGAATTAT--GTGTAAAT--CGTA-TATTTCAACTCTGCTCCTCA  132

seq1  ACTATTGATTATAAGTATATTTGTTTTCC-TATTATCTGTTAATCTGATA  199
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTA-TGATTATAAGTATATTTGTTTTCCTTATTATCTGTTAATCTGATA  181

seq1  CAATCAAAACTGTAAGGTTGTAAGTTGAAATGGAAAATAGG-AACAGAAA  248
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAATCAAAACTGTAAGGTTGTAAGTTGAAATGGAAAATAGGAAACAGAAA  231

seq1  ACAATTACTTTTCTTGAATATCCATTATATACTAGATTGCTTATATCTCA  298
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTTTTTCTTGAATATCCATTATATACTAGATTGCTTATATCTCA  281

seq1  TCA-TTATCATCTTAAAAGATATAGTTATGTTTTCTTCATAAATATATTG  347
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATCATCTTAAAAGATATAGTTATGTTTTCTTCATAAATATATTG  331

seq1  AAGCTCAGAAAGATTA-TTTCCATTTATTTCACAAAGCAAATGGGCAGTA  396
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGCTCAGAAAGATTATTTTCCATTTATTTCACAAAGCAAATGGGCAGTA  381

seq1  AAGCCAAATTTCAAATATAGATAGTGCATTTGTTTATTTTATGTTCCACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAATTTCAAATATAGATAGTGCATTTGTTTATTTTATGTTCCACT  431

seq1  AATATTTATTGAGGATATGCCGCATGTTACCCATTGTGCCATGTGATGCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATTGAGGATATGCCGCATGTTACCCATTGTGCCATGTGATGCA  481

seq1  ACAGATCAAAGCCCTGTTCTCTTGGAAACTAACTATGGAGTAGCATTGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCAAAGCCCTGTTCTCTTGGAAACTAACTATGGAGTAGCATTGTC  531

seq1  TTCACATATAATGAGTTATTGACCGTACCAGTCATTTTAAAATAGAAAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATATAATGAGTTATTGACCGTACCAGTCATTTTAAAATAGAAAAC  581

seq1  TAACTCAAAATAGATTATAGCAATGGAAAACTGCATTCGTCACAGATCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAAAATAGATTATAGCAATGGAAAACTGCATTCGTCACAGATCTA  631

seq1  AAAAAGATCTTGTAGATGATGTATTTAAGAATGCCATACTATAGACACAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATCTTGTAGATGATGTATTTAAGAATGCCATACTATAGACACAT  681

seq1  TGTGTTTCAGCCTTCCACCAACTCATCATGATTCATACCATTATAATTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCAGCCTTCCACCAACTCATCATGATTCATACCATTATAATTTC  731

seq1  AAAGCAAACGTAGCAATGCAGAGGACTATCTAGTCATAGTTAAGATCAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAACGTAGCAATGCAGAGGACTATCTAGTCATAGTTAAGATCAAA  781

seq1  ATTTTCTTCTGCAGAACCTCCTAAAGAAAATCAGTATAATATGAACATAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCTGCAGAACCTCCTAAAGAAAATCAGTATAATATGAACATAC  831

seq1  CTTAAATACTCCATCTGAAATAGAAATTTCACTGAAAGATTTGCACAAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATACTCCATCTGAAATAGAAATTTCACTGAAAGATTTGCACAAAA  881

seq1  GTGGTTCCTAATAAAATAATTCTCTGGAAACTGAAATCCAGTGTTCTAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCCTAATAAAATAATTCTCTGGAAACTGAAATCCAGTGTTCTAGG  931

seq1  AAAACCCATGATATATTTTAGAGAATCTTAAAAAAAAAAAAAAAAAAAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCATGATATATTTTAGAGAATCTTAAAAAAAAAAAAAAAAAAAAA  981

seq1  AAAAAAGAACTTTATCTCTTCCAGGCAAAGTTTACATTATTAGTTACCTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAACTTTATCTCTTCCAGGCAAAGTTTACATTATTAGTTACCTC  1031

seq1  TGGGTCACAGCTTGTTTGCTCAGTTTATTCAGTTCATCACTAGATTATCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCACAGCTTGTTTGCTCAGTTTATTCAGTTCATCACTAGATTATCA  1081

seq1  CATCCTTTGAATTC  1110
      ||||||||||||||
seq2  CATCCTTTGAATTC  1095