BAC Information

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BAC

Clone NameB6Ng01-267N16
Chromosome12 (Build37)12 (Build37)
Map Location 25,107,016 - 25,107,99318,126,448 - 18,127,637
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG668518, LOC100043445, LOC668697, LOC100042923, LOC677338, EG668701, LOC668471, LOC668703, LOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714
Downstream geneLOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267N16.bB6Ng01-267N16.g
ACCGA070866GA070867
length1,1111,189
definitionB6Ng01-267N16.b B6Ng01-267N16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,107,016 - 25,107,993)(18,126,448 - 18,127,637)
sequence
gaattctgtttctattttttggaataatttgaggagagttggaattaggt
cttctttgaaggtctgatagaactctgcactaaatccatctggtcctgag
ggtttttttttttttttttggttgggagactattagtgactgcttctatt
tctttaggggaaatgggactgttaagatcattaatctgatcctgatttaa
ctttggtacctgatatctgtctaggaagttgtccatttcatccaggtttt
ccagttgagtatagccttttttagtaggatctgatggtgttttggatttc
ctcagtatctgttgttatgtctcccttttcatttctgattttattaatta
ggatactgtccctgtgccctctcgttagtctgactaagggtttatctatc
ttgttgattttctcaaagaaccagttcctggtttggttgattctttgaat
agttctttttgtttccacttggttgatttcagccataagtttgattattt
cctgccatctactcctctagggtgaattttcttccttttgttctagagtt
tctaggtgtgctgtcagactactagtgtatgctctctctagtttcctttt
ggaggaactcagggctatgaaatctctccttttcaatttagagtttccat
gtgatgaaagatctgaagaatggtttgtagatggagaggtaaaaataaag
ccaagagacagaagatacagtaaggagaactcctgaaggaaggttggtga
gaatgtagcaagaccttacttgcagatcagtaacactgaaatatatagga
tctcagcaccatctgctcaatataccatgaatgtaaaaactggtcttttt
cacattgtgtgtgtgtgcataggcatgttggaatacatgtgcaggggtat
gcctacttatgggacctgtgtacacaaaggttcaagttaacctcagtgtc
atttcttcaggtgccacacacttgtttttgtttttgagtttatggttgtt
ttgagaaaaagatctctcattgatctagggattgtcagaagtttaaaatt
agctggcagagtctacaagaatacttttctctactactacccttgtactg
ggattacaagt
gaattccactgcactgagaaaacagtctgtagggactaggtcgcctctgt
gatttgggcattgcttccacttacaggtagctcagaatcctacaagcaaa
tccctctgcctcaaacacataccaggagagcaaaggagtgatccaagcat
ggatgttagacactttcagctccactggggacgcttttggtcttaaaaat
atttctcattatatttgtgtgagcatgcactgatgtggaaatcagagggc
actctgcaggacttggttctctcttctaccacgttggttttgagaactga
acttaggtcaccaggctttgtgtttccctactttttggccatgtttattc
tcgagtcattattttgtagacggatcctcagaggtttgctggattgtggg
ctctggaatgggctcactgttcacttacctccaagaatgaccccatgcct
gcctacactcataaagaaattcccaacactctggctttgagcttctccac
ctaactgccacataaagcttcagaattttgtttgatggaaaatcctggaa
atcctattaagcatacaagctacctgagctcctctcctgaagactaattt
taaaggtctaaataaggcctcccagaatctagatttggaaaatgaggtca
gggcaagtgtacttattgggcaagcatgacttgagttcaaagcctagcac
acatgtggagaggaattttaattcagcagcatggcagctctggcacggga
tcatatccaaagacatgatcatggcttggaccatggtcattgcaaccata
gccccagtaggtgagaaaagatgctgaggactgaacctatggcaacccag
gagtgcagaggcctaggctggccatgagaaaagacacagcattctgaaca
ggtggagaggggaggttttgctggagtattctgtgtgttggagttcatag
cccatccttggataaatacttctgaaatacgtggggctgtgtgatggaat
gaatcctgaggtgagcacccacaatggcagttcacagctgtctgtaactc
tagctcagaagatcggacaatctaatacagaaatttcatgcaggtgaaat
tacccagtgcaccatagaatgaaccgaatattttccttgaaaaaaaagaa
accatttgtggaaaatgagaaaagatgtgcacatgagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_25107016_25107993
seq2: B6Ng01-267N16.b_178_1155

seq1  TAGTGACTACTTCTATTTCTTTAGGGGAAATGGGACTGTTAAGATCGTTA  50
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  TAGTGACTGCTTCTATTTCTTTAGGGGAAATGGGACTGTTAAGATCATTA  50

seq1  ATCTGATCCTGATTTAACTTTGGTACCTGGTATCTGTCTAGGAAGTTGTC  100
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATCTGATCCTGATTTAACTTTGGTACCTGATATCTGTCTAGGAAGTTGTC  100

seq1  CATTTCATCCAGGTTTTCCATTTTTGTTGAGTATAGCCTTTTGTTG-AG-  148
      ||||||||||||||||||||     ||||||||||||||||| | | || 
seq2  CATTTCATCCAGGTTTTCCA-----GTTGAGTATAGCCTTTTTTAGTAGG  145

seq1  ----TATGATGTTTTGGATTTCCTCAGTATCTGTTGTTATGCCTCCTTTT  194
           ||| |||||||||||||||||||||||||||||||| |||| |||
seq2  ATCTGATGGTGTTTTGGATTTCCTCAGTATCTGTTGTTATGTCTCCCTTT  195

seq1  TCATTTCTGATTTTATTAATTAGGATACTGTCCCTGTGCCCTCTAGTTAG  244
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCATTTCTGATTTTATTAATTAGGATACTGTCCCTGTGCCCTCTCGTTAG  245

seq1  TCTGGCTAAGGGTT---------------TTTTCTCAAAGAACCAGTTCC  279
      |||| |||||||||               |||||||||||||||||||||
seq2  TCTGACTAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAACCAGTTCC  295

seq1  TGGTTTGGTTGATTCTTTGAATAGTTCTTTTTGTTTCCACTTGGTTGATT  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGTTGATTCTTTGAATAGTTCTTTTTGTTTCCACTTGGTTGATT  345

seq1  TCAGCCCTAAGTTTGATTATTTCCTGCCATCTACTCCTCTAGGGTAAATT  379
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  TCAGCCATAAGTTTGATTATTTCCTGCCATCTACTCCTCTAGGGTGAATT  395

seq1  TGCTTCCTTTCTTTCTAGAGTTTCTAGGTGTGCTGTCAGACTACTAGTGT  429
      | ||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTTTGTTCTAGAGTTTCTAGGTGTGCTGTCAGACTACTAGTGT  445

seq1  ATGCTCTCTCTAGTTTCTTTTTGGAGGCACTCAGGGCTATGAAATCTCTC  479
      ||||||||||||||||| ||||||||| ||||||||||||||||||||| 
seq2  ATGCTCTCTCTAGTTTCCTTTTGGAGGAACTCAGGGCTATGAAATCTCT-  494

seq1  CCTTTTCAATTTAGAGTTTCCATGTGATAAAAGATCTGAAGAATGGTTTG  529
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCTTTTCAATTTAGAGTTTCCATGTGATGAAAGATCTGAAGAATGGTTTG  544

seq1  TAGATGGAGAGGT-AAAATAGAGCCAAGAGACAGAAGATACAGTAAGGAG  578
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  TAGATGGAGAGGTAAAAATAAAGCCAAGAGACAGAAGATACAGTAAGGAG  594

seq1  AACTCCCGAAGGAAGGTTGGTGAGAATGTAGCAAGACCTTACTTGCAGAT  628
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGAAGGAAGGTTGGTGAGAATGTAGCAAGACCTTACTTGCAGAT  644

seq1  CAGTAACACTGAAATATATAGGATCTCGGCACCATCTGCTCAATATCCCA  678
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  CAGTAACACTGAAATATATAGGATCTCAGCACCATCTGCTCAATATACCA  694

seq1  TGAATGTAAAAACTGGTCATTTTCACATTTGTGTGTGTGTGTGTGCATAG  728
      |||||||||||||||||| |||||||||     |||||||||||||||||
seq2  TGAATGTAAAAACTGGTCTTTTTCACAT-----TGTGTGTGTGTGCATAG  739

seq1  GCATGTTGGAATACATGTGCAGGGGTATGCCTGCTTATGGGGCCTGTGTA  778
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  GCATGTTGGAATACATGTGCAGGGGTATGCCTACTTATGGGACCTGTGTA  789

seq1  CACAAAGGTTCAAGTTAACCTCAGGTGTCATTTC-TCAAGTGCCACCCAC  827
      ||||||||||||||||||||||| |||||||||| ||| ||||||| |||
seq2  CACAAAGGTTCAAGTTAACCTCA-GTGTCATTTCTTCAGGTGCCACACAC  838

seq1  TTGTTTTGTTTTTTGAGTTTATTGGGTTTTTTTTTTTTTGAG-ACAAGAT  876
      |||||||  ||||||||||||| |        || ||||||| | |||||
seq2  TTGTTTTTGTTTTTGAGTTTATGG--------TTGTTTTGAGAAAAAGAT  880

seq1  CTCTCATTGATCTAGGGATTGTCTGGAAGTTT-AAATAGGCTGGGCAGGG  925
      |||||||||||||||||||||||  ||||||| ||||  ||| ||||  |
seq2  CTCTCATTGATCTAGGGATTGTC-AGAAGTTTAAAATTAGCT-GGCA--G  926

seq1  AGTC-ACAAGAATACCTTTCTCTACCCACTACCCCTGGTACTGGGATTAC  974
      |||| |||||||||| |||||||| | |||| |||| |||||||||||||
seq2  AGTCTACAAGAATACTTTTCTCTA-CTACTA-CCCTTGTACTGGGATTAC  974

seq1  AAGT  978
      ||||
seq2  AAGT  978

seq1: chr12_18126448_18127637
seq2: B6Ng01-267N16.g_68_1256

seq1  GAATTCCACTGCACTGAGAAAACAGTCTGTAGGGACTAGGTCGCCTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGCACTGAGAAAACAGTCTGTAGGGACTAGGTCGCCTCTGT  50

seq1  GATTTGGGCATTGCTTCCACTTACAGGTAGCTCAGAATCCTACAAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGGCATTGCTTCCACTTACAGGTAGCTCAGAATCCTACAAGCAAA  100

seq1  TCCCTCTGCCTCAAACACATACCAGGAGAGCAAAGGAGTGATCCAAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGCCTCAAACACATACCAGGAGAGCAAAGGAGTGATCCAAGCAT  150

seq1  GGATGTTAGACACTTTCAGCTCCACTGGGGACGCTTTTGGTCTTAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTAGACACTTTCAGCTCCACTGGGGACGCTTTTGGTCTTAAAAAT  200

seq1  ATTTCTCATTATATTTGTGTGAGCATGCACTGATGTGGAAATCAGAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCATTATATTTGTGTGAGCATGCACTGATGTGGAAATCAGAGGGC  250

seq1  ACTCTGCAGGACTTGGTTCTCTCTTCTACCACGTTGGTTTTGAGAACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAGGACTTGGTTCTCTCTTCTACCACGTTGGTTTTGAGAACTGA  300

seq1  ACTTAGGTCACCAGGCTTTGTGTTTCCCTACTTTTTGGCCATGTTTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGTCACCAGGCTTTGTGTTTCCCTACTTTTTGGCCATGTTTATTC  350

seq1  TCGAGTCATTATTTTGTAGACGGATCCTCAGAGGTTTGCTGGATTGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTCATTATTTTGTAGACGGATCCTCAGAGGTTTGCTGGATTGTGGG  400

seq1  CTCTGGAATGGGCTCACTGTTCACTTACCTCCAAGAATGACCCCATGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAATGGGCTCACTGTTCACTTACCTCCAAGAATGACCCCATGCCT  450

seq1  GCCTACACTCATAAAGAAATTCCCAACACTCTGGCTTTGAGCTTCTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACACTCATAAAGAAATTCCCAACACTCTGGCTTTGAGCTTCTCCAC  500

seq1  CTAACTGCCACATAAAGCTTCAGAATTTTGTTTGATGGAAAATCCTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGCCACATAAAGCTTCAGAATTTTGTTTGATGGAAAATCCTGGAA  550

seq1  ATCCTATTAAGCATACAAGCTACCTGAGCTCCTCTCCTGAAGACTAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATTAAGCATACAAGCTACCTGAGCTCCTCTCCTGAAGACTAATTT  600

seq1  TAAAGGTCTAAATAAGGCCTCCCAGAATCTAGATTTGGAAAATGAGGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTCTAAATAAGGCCTCCCAGAATCTAGATTTGGAAAATGAGGTCA  650

seq1  GGGCAAGTGTACTTATTGGGCAAGCATGACTTGAGTTCAAAGCCTAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGTGTACTTATTGGGCAAGCATGACTTGAGTTCAAAGCCTAGCAC  700

seq1  ACATGTGGAGAGGAATTTTAATTCAGCAGCATGGCAGCTCTGGCACGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGAGAGGAATTTTAATTCAGCAGCATGGCAGCTCTGGCACGGGA  750

seq1  TCATATCCAAAGACATGATCATGGCTTGGACCATGGTCATTGCAACCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCCAAAGACATGATCATGGCTTGGACCATGGTCATTGCAACCATA  800

seq1  GCCCCAGTAGGTGAGAAAAGATGCTGAGGACTGAACCTATGGCAACCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGTAGGTGAGAAAAGATGCTGAGGACTGAACCTATGGCAACCCAG  850

seq1  GAGTGCAGAGGCCTAGGCTGGCCATGAGAAAAGACACAGCATTCTGAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAGAGGCCTAGGCTGGCCATGAGAAAAGACACAGCATTCTGAACA  900

seq1  GGTGGAGAGGGGAGGTTTTGCTGGAGTATTCTGTGTGTTGGAGTTCATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGAGGGGAGGTTTTGCTGGAGTATTCTGTGTGTTGGAGTTCATAG  950

seq1  CCCATCCTTGGAT-AATACTTCTGAAATAACGTGGGGCTGTTGTTGATGG  999
      ||||||||||||| |||||||||||||| ||||||||||||   ||||||
seq2  CCCATCCTTGGATAAATACTTCTGAAAT-ACGTGGGGCTGT--GTGATGG  997

seq1  AATGAATCCTGAGGTGAGCACCCAC-ATGGCAGTTCACAGCTGTCTGTAA  1048
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATGAATCCTGAGGTGAGCACCCACAATGGCAGTTCACAGCTGTCTGTAA  1047

seq1  CTCTAGCTCAAGGAGATCGGACATCCTAACACAGACA-TTCATGCAGGTG  1097
      ||||||||| || ||||||||||  |||| ||||| | ||||||||||||
seq2  CTCTAGCTC-AGAAGATCGGACAATCTAATACAGAAATTTCATGCAGGTG  1096

seq1  AAAT--ACCAGTGCAC--TAGAATGAAAACGAATATTTTCTTTAAAAAAA  1143
      ||||   |||||||||  ||||||| || ||||||||||| ||  |||||
seq2  AAATTACCCAGTGCACCATAGAATG-AACCGAATATTTTCCTT-GAAAAA  1144

seq1  AAAGAAAACTATTGTGGAAAAATGAAGAAAAAAGATAGACATGAGCT  1190
      ||||||| |  |||||| |||||| |||||| |  |  |||||||||
seq2  AAAGAAACCATTTGTGG-AAAATG-AGAAAAGATGTGCACATGAGCT  1189