BAC Information

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BAC

Clone NameB6Ng01-267P20
Chromosome12 (Build37)
Map Location 33,524,189 - 33,525,383
singlet/doubletsinglet
Overlap genePbef1
Upstream geneHbp1, Prkar2b, Pik3cg, 2010109K11Rik, LOC100043548
Downstream geneLOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267P20.b
ACCGA070970
length1,172
definitionB6Ng01-267P20.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgaaactgtataccaaaagacatatatctgtcttttttacctt
gtgaaatctttgatctaagagcagttatctagtactttatcacagtatat
ataccgcttatatcttaaaatgtccagtaacaggcagtgatgtagtttac
ctacaggttctttttattagtatgtgctcaaggaatgagaatcttaacag
ttagtttgaacataactattcccttatgaaatcaagattctatatactgt
ccctataaaaacttttttgagctggccaatgaacacgaacctttctcaac
tagtttgagacgactccaccgtaattgtgcttctttaaataaaaatgctt
agcaaacagagcagactgttactagtgtactatttttatcttgagagggt
cagctttatatctttctgtcccttgcagcaccaagcagactgccttgtat
atgaaagctggtgagttattatgtatcagagtgatgaggcccaggtcata
tatacccaaacctacacagagctttacgcattcctgaatgactataggaa
aggaagctgagaactagagatagagacatacacttattacttatatacgc
tgtttacttcttataaagggaactctagaactagactgggggcaacctgg
attgtaatttcctagtgtacctttggtttagtaaggacaaataaatgagc
attagagaaacagaactcctttttaaattatcattattaaaatggctttt
tatctagaattgaagatacagggtccagatgacaattttctgggcagaca
agtgagactacatagaaaagcagggtaagtaagcaggactcaggacattc
ccagctttcacttagtgaagaaaaatctacctgcatatgcactatagcaa
atgaaagaccattccttaaaataaacccaatatggcaactattaaatgtt
aggaaaggtctcaattcttttactactagaaaggttgggaaattctagtc
ctgctggatgctaatctttgtaaaagtgtgtgcgcatcatttttaacgtc
catgaacgttatttagcatctgctctgtgtactgctgagtataatacaaa
tcaacaaggtttagaagcattggtatatttgtagcagagatgactaggcc
ggttgcatgcaagcaagtgttc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_33524189_33525383
seq2: B6Ng01-267P20.b_48_1219 (reverse)

seq1  GAACACTTGCCTTGCATGCACACGGCCCTGGGTTCTATCTCTGGCCCTAC  50
      ||||||||| ||||||||||  |||||  |   || |||||||   ||||
seq2  GAACACTTG-CTTGCATGCAACCGGCCTAG---TC-ATCTCTG---CTAC  42

seq1  AAATATACAAAATGGCTTTCTAAAACTTGTTTGAATTTGTTATTTATAAC  100
      ||||||||  ||||   ||||||| ||||||   ||||||   |||| ||
seq2  AAATATAC-CAATG--CTTCTAAACCTTGTT--GATTTGT--ATTAT-AC  84

seq1  TCAGCAGTACACAGAGCCAGATGCTAAATAACCGTTCATGGACGTTAAAA  150
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  TCAGCAGTACACAGAG-CAGATGCTAAATAA-CGTTCATGGACGTTAAAA  132

seq1  ATTGGATGCGCACACACTTTTTACAAAGATTAGCATCCAGCAGGACTAGA  200
      ||  ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AT--GATGCGCACACAC-TTTTACAAAGATTAGCATCCAGCAGGACTAGA  179

seq1  ATTTCCCAAACCTTTCTAGTAGTAAAAGAATTGAAGACCTTTCCTAACAT  250
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTTCCC-AACCTTTCTAGTAGTAAAAGAATTG-AGACCTTTCCTAACAT  227

seq1  TTAATAGTTGCCATATTGGTTTTATTTTAAGGAATGGTCTTTCATTTGCT  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAATAGTTGCCATATTGGGTTTATTTTAAGGAATGGTCTTTCATTTGCT  277

seq1  ATAGTGCATATGCAGGTAGATTTTTCTTCACTAAGTGAAAGCTGGGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCATATGCAGGTAGATTTTTCTTCACTAAGTGAAAGCTGGGAATG  327

seq1  TCCTGAGTCCTGCTTACTTACCCTGCTTTTCTATGTAGTCTCACTTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTCCTGCTTACTTACCCTGCTTTTCTATGTAGTCTCACTTGTCT  377

seq1  GCCCAGAAAATTGTCATCTGGACCCTGTATCTTCAATTCTAGATAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAAAATTGTCATCTGGACCCTGTATCTTCAATTCTAGATAAAAAG  427

seq1  CCATTTTAATAATGATAATTTAAAAAGGAGTTCTGTTTCTCTAATGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTAATAATGATAATTTAAAAAGGAGTTCTGTTTCTCTAATGCTCA  477

seq1  TTTATTTGTCCTTACTAAACCAAAGGTACACTAGGAAATTACAATCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTCCTTACTAAACCAAAGGTACACTAGGAAATTACAATCCAGG  527

seq1  TTGCCCCCAGTCTAGTTCTAGAGTTCCCTTTATAAGAAGTAAACAGCGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCCAGTCTAGTTCTAGAGTTCCCTTTATAAGAAGTAAACAGCGTA  577

seq1  TATAAGTAATAAGTGTATGTCTCTATCTCTAGTTCTCAGCTTCCTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTAATAAGTGTATGTCTCTATCTCTAGTTCTCAGCTTCCTTTCCT  627

seq1  ATAGTCATTCAGGAATGCGTAAAGCTCTGTGTAGGTTTGGGTATATATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCATTCAGGAATGCGTAAAGCTCTGTGTAGGTTTGGGTATATATGA  677

seq1  CCTGGGCCTCATCACTCTGATACATAATAACTCACCAGCTTTCATATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCCTCATCACTCTGATACATAATAACTCACCAGCTTTCATATACA  727

seq1  AGGCAGTCTGCTTGGTGCTGCAAGGGACAGAAAGATATAAAGCTGACCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTCTGCTTGGTGCTGCAAGGGACAGAAAGATATAAAGCTGACCCT  777

seq1  CTCAAGATAAAAATAGTACACTAGTAACAGTCTGCTCTGTTTGCTAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGATAAAAATAGTACACTAGTAACAGTCTGCTCTGTTTGCTAAGCA  827

seq1  TTTTTATTTAAAGAAGCACAATTACGGTGGAGTCGTCTCAAACTAGTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTAAAGAAGCACAATTACGGTGGAGTCGTCTCAAACTAGTTGA  877

seq1  GAAAGGTTCGTGTTCATTGGCCAGCTCAAAAAAGTTTTTATAGGGACAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTCGTGTTCATTGGCCAGCTCAAAAAAGTTTTTATAGGGACAGT  927

seq1  ATATAGAATCTTGATTTCATAAGGGAATAGTTATGTTCAAACTAACTGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAATCTTGATTTCATAAGGGAATAGTTATGTTCAAACTAACTGTT  977

seq1  AAGATTCTCATTCCTTGAGCACATACTAATAAAAAGAACCTGTAGGTAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTCATTCCTTGAGCACATACTAATAAAAAGAACCTGTAGGTAAA  1027

seq1  CTACATCACTGCCTGTTACTGGACATTTTAAGATATAAGCGGTATATATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCACTGCCTGTTACTGGACATTTTAAGATATAAGCGGTATATATA  1077

seq1  CTGTGATAAAGTACTAGATAACTGCTCTTAGATCAAAGATTTCACAAGGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATAAAGTACTAGATAACTGCTCTTAGATCAAAGATTTCACAAGGT  1127

seq1  AAAAAAGACAGATATATGTCTTTTGGTATACAGTTTCAGGAATTC  1195
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGACAGATATATGTCTTTTGGTATACAGTTTCAGGAATTC  1172