BAC Information

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BAC

Clone NameB6Ng01-268C05
Chromosome12 (Build37)
Map Location 54,381,907 - 54,555,244
singlet/doubletdoublet
Overlap geneNpas3
Upstream geneArhgap5, Akap6
Downstream geneEgln3, EG665239, EG665251, LOC665256
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268C05.bB6Ng01-268C05.g
ACCGA071078GA071079
length1,1871,007
definitionB6Ng01-268C05.b B6Ng01-268C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,381,907 - 54,383,089)(54,554,586 - 54,555,244)
sequence
gaattcaggtgtcaggtaacactgaaatctgagtttggaagcctgacctg
taggacggcacagtccctctgtgtctggagtctggggatttagtatctgt
ggttctataaggaggcagtgtgaccagaaatgttaagaataatgcatttt
aaaaacatagtatgcatatatatgtaaagaacatgtataggcctatttcc
ttgttattccctgaacaagaccatatagtaataatttataggacatttac
tttcagttaaatataataagcaagtaatctattgagtagatatgttttaa
ctatacaggagggtatgtacagttcatatgctgttctggaatttgatatc
tataatgcatctcagagctaatgtcctacagatttaaaaaatcatcatca
tcatcatcatcaacaacaacagaactgtattcttgagtaagggaagtgat
cccagaatggcttaagcaaatacttatgccttttaatactctggagtata
aaggtaggtgacttgacttttacccccgaggacaacagaggcctcactct
cgaagtcctcttgcctgttgtcctatggttacccaatatctgtcttgtca
atcctcaaagcataaagtgtgaagcaaggggctggacagccacgttcaaa
cttttttctttttcttctttttctttttctttttctttttcttttttttt
taatcagaaagtaaactctctttccaaagttacaaactgactttacttcc
ctctcgatggtcagaacagtgccactggcaaactttccttatcattaggc
catgcagacctcattagaccatgtagactgccgaaagaagatcagaggca
aatacaagaggaagaacagactaaagagttttctttagtgtttgctatga
gaataagtcttgataggtagcgtgtgtgattaataaagtgatctgtcaga
atttgggaggtgatcaatcatgatgtttaggtttgtcttgtgagaaagac
actgatagagggcaagctttctactgccacaacaatgaaaaagaaagtgc
aagtgcaaagctgcaccatagctttggaacactaaggtggaggaatcatc
cggaacacaggaactctcagcatccaccagggaattattcagttcgtact
acatggcttctgacctccattgggaagaggtgcattg

gaattctaaaaacactaaacgttgtcttcttatttaggaaaatgtggttt
ttatctgttaataaagaatgtttttctcattttaaaatggcaggcttgat
aataaattaccatttggccatttaattaatcatatatggcctaaagtatt
aaccaaaagctattcaatagatggtaacaacatgctaaccacattagatg
aaagtattaagtagatgactttcaaaacaagatgaaccctacttaacagt
tctactctggatgcaatgtgtggtttggggtgagatcctagtaacagttt
ctcattcactcaacagtctttggatgccagccagaactatgaatacaaag
agtaaaacaattctactaccaagtaatgtccagtacagttttataattca
tttaaattacatttgagtaattaccaatctacattttctctcatatccct
aaagcatgacttttcatcctttttaatgtctcaaaaatcactataccatt
aatccataaaatatactgaaagttttatattatattaagttgtgctttac
tgatgttaacaaaaactttccagctatgccctgtgccttcttcagcaatc
tcccttctcctgtgttgcctgttacctatggtcaactaccacccaaacag
cttgaatcaaagtgtctactaataaacaattcatacattttatttattct
cattctgaataacctggcaaagttattcaggttaaccaggctaactgtga
ccgcattatagtgcttgcattcaaatcatctttattttacttaataatga
aaccaaagcttcggagtttggtatttaagaaacaaataaaaataaaaagc
cacaatatgcttcctataaaattaaagagaagagaaaaccttctacactg
taagggaaattaagaaacaacaacacaaaacaacctttaccaggatttac
ggttgaaagctatttttctatctgtgaattagggaaagaggtaattcagg
ttggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_54381907_54383089
seq2: B6Ng01-268C05.b_48_1234

seq1  GAATTCAGGTGTCAGGTAACACTGAAATCTGAGTTTGGAAGCCTGACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGTCAGGTAACACTGAAATCTGAGTTTGGAAGCCTGACCTG  50

seq1  TAGGACGGCACAGTCCCTCTGTGTCTGGAGTCTGGGGATTTAGTATCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACGGCACAGTCCCTCTGTGTCTGGAGTCTGGGGATTTAGTATCTGT  100

seq1  GGTTCTATAAGGAGGCAGTGTGACCAGAAATGTTAAGAATAATGCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTATAAGGAGGCAGTGTGACCAGAAATGTTAAGAATAATGCATTTT  150

seq1  AAAAACATAGTATGCATATATATGTAAAGAACATGTATAGGCCTATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATAGTATGCATATATATGTAAAGAACATGTATAGGCCTATTTCC  200

seq1  TTGTTATTCCCTGAACAAGACCATATAGTAATAATTTATAGGACATTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTCCCTGAACAAGACCATATAGTAATAATTTATAGGACATTTAC  250

seq1  TTTCAGTTAAATATAATAAGCAAGTAATCTATTGAGTAGATATGTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTAAATATAATAAGCAAGTAATCTATTGAGTAGATATGTTTTAA  300

seq1  CTATACAGGAGGGTATGTACAGTTCATATGCTGTTCTGGAATTTGATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGGAGGGTATGTACAGTTCATATGCTGTTCTGGAATTTGATATC  350

seq1  TATAATGCATCTCAGAGCTAATGTCCTACAGATTTAAAAAATCATCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGCATCTCAGAGCTAATGTCCTACAGATTTAAAAAATCATCATCA  400

seq1  TCATCATCATCAACAACAACAGAACTGTATTCTTGAGTAAGGGAAGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATCATCAACAACAACAGAACTGTATTCTTGAGTAAGGGAAGTGAT  450

seq1  CCCAGAATGGCTTAAGCAAATACTTATGCCTTTTAATACTCTGGAGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAATGGCTTAAGCAAATACTTATGCCTTTTAATACTCTGGAGTATA  500

seq1  AAGGTAGGTGACTTGACTTTTACCCCCGAGGACAACAGAGGCCTCACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGGTGACTTGACTTTTACCCCCGAGGACAACAGAGGCCTCACTCT  550

seq1  CGAAGTCCTCTTGCCTGTTGTCCTATGGTTACCCAATATCTGTCTTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTCCTCTTGCCTGTTGTCCTATGGTTACCCAATATCTGTCTTGTCA  600

seq1  ATCCTCAAAGCATAAAGTGTGAAGCAAGGGGCTGGACAGCCACGTTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAAAGCATAAAGTGTGAAGCAAGGGGCTGGACAGCCACGTTCAAA  650

seq1  CTTTTTTCTTTTTCTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTTTTTCTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTTTTT  700

seq1  TAATCAGAAAGTAAACTCTCTTTCCAAAGTTACAAACTGACTTTACTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGAAAGTAAACTCTCTTTCCAAAGTTACAAACTGACTTTACTTCC  750

seq1  CTCTCGATGGTCAGAACAGTGCCACTGGCAAACTTTCCTTATCATTAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGATGGTCAGAACAGTGCCACTGGCAAACTTTCCTTATCATTAGGC  800

seq1  CATGCAGACCTCATTAGACCATGTAGACTGCCGAAAGAAGATCAGAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGACCTCATTAGACCATGTAGACTGCCGAAAGAAGATCAGAGGCA  850

seq1  AATACAAGAGGAAGAACAGACTAAAGAGTTTTCTTTAGTGTTTGCTATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGAGGAAGAACAGACTAAAGAGTTTTCTTTAGTGTTTGCTATGA  900

seq1  GAATAAGTCTTGATAGGTAGCGTGTGTGATTAATAAAGTGATCTGTCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGTCTTGATAGGTAGCGTGTGTGATTAATAAAGTGATCTGTCAGA  950

seq1  ATTTGGGAGGTGATCAATCATGATGTTTAGGTTTGTC-TGTGAG-AAGAC  998
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  ATTTGGGAGGTGATCAATCATGATGTTTAGGTTTGTCTTGTGAGAAAGAC  1000

seq1  ACTGATAGAGGGCAAGCTTTCTACTG-CACAAC-ATGAACA--GAAGTGC  1044
      |||||||||||||||||||||||||| |||||| ||||| |   ||||||
seq2  ACTGATAGAGGGCAAGCTTTCTACTGCCACAACAATGAAAAAGAAAGTGC  1050

seq1  -AGTGCAAAGCTGCAACCATAGC-TTGGGACACTAAGGTGGAGGAAGGCA  1092
       ||||||||||||| |||||||| |||| |||||||||||||||||  ||
seq2  AAGTGCAAAGCTGC-ACCATAGCTTTGGAACACTAAGGTGGAGGAA-TCA  1098

seq1  T-CGGGACACAGG-ACTCTCCAGGCCATCAACCAAGGGAATTA-TCAG-T  1138
      | ||| ||||||| ||||| |||  |||| ||| ||||||||| |||| |
seq2  TCCGGAACACAGGAACTCT-CAG--CATCCACC-AGGGAATTATTCAGTT  1144

seq1  CGTACTTACATGGCTCCTGACCTCCATTGGAGGAGGTGTGCATTG  1183
      ||||| ||||||||| |||||||||||||| | ||  ||||||||
seq2  CGTAC-TACATGGCTTCTGACCTCCATTGG-GAAGAGGTGCATTG  1187


seq1: chr12_54554586_54555244
seq2: B6Ng01-268C05.g_64_722 (reverse)

seq1  TGATTCAAGCTGTTTGGGTGGTAGTTGACCATAGGTAACAGGCAACACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAAGCTGTTTGGGTGGTAGTTGACCATAGGTAACAGGCAACACAG  50

seq1  GAGAAGGGAGATTGCTGAAGAAGGCACAGGGCATAGCTGGAAAGTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGAGATTGCTGAAGAAGGCACAGGGCATAGCTGGAAAGTTTTTG  100

seq1  TTAACATCAGTAAAGCACAACTTAATATAATATAAAACTTTCAGTATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATCAGTAAAGCACAACTTAATATAATATAAAACTTTCAGTATATT  150

seq1  TTATGGATTAATGGTATAGTGATTTTTGAGACATTAAAAAGGATGAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGATTAATGGTATAGTGATTTTTGAGACATTAAAAAGGATGAAAAG  200

seq1  TCATGCTTTAGGGATATGAGAGAAAATGTAGATTGGTAATTACTCAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTTAGGGATATGAGAGAAAATGTAGATTGGTAATTACTCAAATG  250

seq1  TAATTTAAATGAATTATAAAACTGTACTGGACATTACTTGGTAGTAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAATGAATTATAAAACTGTACTGGACATTACTTGGTAGTAGAAT  300

seq1  TGTTTTACTCTTTGTATTCATAGTTCTGGCTGGCATCCAAAGACTGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACTCTTTGTATTCATAGTTCTGGCTGGCATCCAAAGACTGTTGA  350

seq1  GTGAATGAGAAACTGTTACTAGGATCTCACCCCAAACCACACATTGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGAGAAACTGTTACTAGGATCTCACCCCAAACCACACATTGCATC  400

seq1  CAGAGTAGAACTGTTAAGTAGGGTTCATCTTGTTTTGAAAGTCATCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAGAACTGTTAAGTAGGGTTCATCTTGTTTTGAAAGTCATCTACT  450

seq1  TAATACTTTCATCTAATGTGGTTAGCATGTTGTTACCATCTATTGAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTTCATCTAATGTGGTTAGCATGTTGTTACCATCTATTGAATAG  500

seq1  CTTTTGGTTAATACTTTAGGCCATATATGATTAATTAAATGGCCAAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTTAATACTTTAGGCCATATATGATTAATTAAATGGCCAAATGG  550

seq1  TAATTTATTATCAAGCCTGCCATTTTAAAATGAGAAAAACATTCTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATTATCAAGCCTGCCATTTTAAAATGAGAAAAACATTCTTTATT  600

seq1  AACAGATAAAAACCACATTTTCCTAAATAAGAAGACAACGTTTAGTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATAAAAACCACATTTTCCTAAATAAGAAGACAACGTTTAGTGTTT  650

seq1  TTAGAATTC  659
      |||||||||
seq2  TTAGAATTC  659


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