BAC Information

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BAC

Clone NameB6Ng01-268E02
Chromosome12 (Build37)
Map Location 117,065,483 - 117,066,530
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582
Downstream geneIghv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268E02.bB6Ng01-268E02.g
ACCGA071161GA071162
length1,0611,172
definitionB6Ng01-268E02.b B6Ng01-268E02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaagtagccaggaagatagtctttaatttagatgttttcttctt
ctctcctgtcctaagtcacaataactcacacaacagactgatactacaaa
ttggatttaaaattatatatatatatatataaaatgaatgatgaaaagaa
aatgaaatgaactccagatgatgcaaaatgcctagcttctctggctctcc
ttttcctgagttgaggtcctcacatggcactggaggaaaccttggaatag
aggacatctacccttgcacagaagagctatataagctcactaccatgaat
ggaacatcaatgactgtgcttctaagtcacaaccatatttcaccactgaa
gaaagactcctgtcagtggaagaacttacagatagatttacaaatgctat
ggatggttatgatcataaatggctgtttgatacctcatggttgaaacatt
gtagcttctttttcaatgtatatgcaattgatgcttgtcattttgataaa
gttcttatgtaataaatgacatacaatattataaatgaaatgtaatataa
ttgtatgctccagagtggctataaaagtatgcattcctaccagtaatgga
gaagtgttcaccttgctccacatcatcatcagcattatctgtcaaattgt
gactttatacttagccattctgacatttgcaagacacaatcctagactca
ttttgatttgcatttcatggtcagctaaggatgctgaccacttctttaag
tgcttctttttcaacaattatccctttgttaagaattctgtttaggccta
caattcatttttaaattggatttttctttgttgatgtctacttttcttag
ggatgtatttaaaatatcagtcttctgttacatctggtgttggtgaacac
attttttccatcctgtagaccacagtttgtcctcttgatagtggtctttg
tcttacagaaacttttctcaatatcatgaagtcaaatttattgattatga
ttcttcatccttgtgatttggtgttctcttcagatattgtctcctgagcc
actagttctaa
gaattccccttaaagagatagcctctctggctatctatcccttgcttcag
agaagatgagcggggatgagagccctgggatgtatgcttgttatagtgtg
tgtgttttttgtgtttggcacatgtgttaggtgcagagtgtgcggcccgc
actttcgccatggtagcgtaggcttttgctgcagtggaggcgggacaatc
tcctcagattcggtttgccgctctaaaagaaattatgctgcgttatgccg
tggggtgcgaggctaagcactgcacagaggatagcttgctgttggcatcc
tgtggaaggcatgtctgattgcatgaaggttcagtgtcctagttcccttc
ccccaggaaaaacgacacgggagctggccaagacctctctgggtgatgag
cccaagggatggttttgtgtagggcccctatgcttgcacactggggatca
gacctctaccttcacccatgaggcttgcttgcagcaattaagatctggcc
ataggttaagtaacatcctggccttttgatgcacctgccacaagcaaaac
acaatctccccaggagtggcttggcatgatagagaggtagtcagtgataa
gactccctgggcatgtcaccaacctaagacagggatcaaaccaatgctgt
ttgtcacccaaggacgggtaaggggcatggctgcggggggctatctacag
acattctctctgccaaaaaagaaaaaagggggaattgtggggagcgggtg
tggcggcagtcccaaaggtgccagggactgcagctaagtcatatgacttg
cacctgacttcctcatataagacacaaacatcttgagtgctgcgcaggtg
taccaggatacaggtgaatccaatttggtgggagatttgcccctgctgcc
ctgattagctgaagctgcgtgcctggtgagtggcgtgacctgctgtgcgt
gatgggaaactgagaatataaaagagtgagaggcccggttagaagggagg
attattattcgagagaggatgttattatgggagaatctaaaaacagtgag
aatatcaacagggaagattatcagagaatagacctgaataacgtggtctg
aaggatctgtaccacgtctctgctgcaagttgtggcacgcagaagtgctc
gttggttgatacatgatgactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_117065483_117066530
seq2: B6Ng01-268E02.b_51_1101

seq1  GAATTCTAAGTAGCCAGGAAGATAGTCTTTAATTTAGATGTTTTCTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTAGCCAGGAAGATAGTCTTTAATTTAGATGTTTTCTTCTT  50

seq1  CTCTCCTGTCCTAAGTCACAATAACTCACACAACAGACTGATACTACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGTCCTAAGTCACAATAACTCACACAACAGACTGATACTACAAA  100

seq1  TTGGATTTAAAATTATATATATATATATATAAAATGAATGATGAAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTAAAATTATATATATATATATATAAAATGAATGATGAAAAGAA  150

seq1  AATGAAATGAACTCCAGATGATGCAAAATGCCTAGCTTCTCTGGCTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATGAACTCCAGATGATGCAAAATGCCTAGCTTCTCTGGCTCTCC  200

seq1  TTTTCCTGAGTTGAGGTCCTCACATGGCACTGGAGGAAACCTTGGAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGAGTTGAGGTCCTCACATGGCACTGGAGGAAACCTTGGAATAG  250

seq1  AGGACATCTACCCTTGCACAGAAGAGCTATATAAGCTCACTACCATGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATCTACCCTTGCACAGAAGAGCTATATAAGCTCACTACCATGAAT  300

seq1  GGAACATCAATGACTGTGCTTCTAAGTCACAACCATATTTCACCACTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATCAATGACTGTGCTTCTAAGTCACAACCATATTTCACCACTGAA  350

seq1  GAAAGACTCCTGTCAGTGGAAGAACTTACAGATAGATTTACAAATGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACTCCTGTCAGTGGAAGAACTTACAGATAGATTTACAAATGCTAT  400

seq1  GGATGGTTATGATCATAAATGGCTGTTTGATACCTCATGGTTGAAACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTTATGATCATAAATGGCTGTTTGATACCTCATGGTTGAAACATT  450

seq1  GTAGCTTCTTTTTCAATGTATATGCAATTGATGCTTGTCATTTTGATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTCTTTTTCAATGTATATGCAATTGATGCTTGTCATTTTGATAAA  500

seq1  GTTCTTATGTAATAAATGACATACAATATTATAAATGAAATGTAATATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTATGTAATAAATGACATACAATATTATAAATGAAATGTAATATAA  550

seq1  TTGTATGCTCCAGAGTGGCTATAAAAGTATGCATTCCTACCAGTAATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGCTCCAGAGTGGCTATAAAAGTATGCATTCCTACCAGTAATGGA  600

seq1  GAAGTGTTCACCTTGCTCCACATCATCATCAGCATTATCTGTCAAATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTCACCTTGCTCCACATCATCATCAGCATTATCTGTCAAATTGT  650

seq1  GACTTTATACTTAGCCATTCTGACATTTGCAAGACACAATCCTAGACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATACTTAGCCATTCTGACATTTGCAAGACACAATCCTAGACTCA  700

seq1  TTTTGATTTGCATTTCATGGTCAGCTAAGGATGCTGACCACTTCTTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTTGCATTTCATGGTCAGCTAAGGATGCTGACCACTTCTTTAAG  750

seq1  TGCTTCTTTTTCAACAATTATCCCTTTGTTAAGAATTCTGTTTAGGCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTTTTCAACAATTATCCCTTTGTTAAGAATTCTGTTTAGGCCTA  800

seq1  CAATTCATTTTTAAATTGGATTTTTCTTTGTTGATGTCTAC-TTTCTTAG  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAATTCATTTTTAAATTGGATTTTTCTTTGTTGATGTCTACTTTTCTTAG  850

seq1  GGATGTATTTAAAATATCAGTCTTCTGTTACATCTGGTGTTGGTGAACAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTATTTAAAATATCAGTCTTCTGTTACATCTGGTGTTGGTGAACAC  900

seq1  A-TTTTTCCATCCTGTAGACCACAGTTTGTCCTCTTGATAGTGGTCTTTG  948
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCCATCCTGTAGACCACAGTTTGTCCTCTTGATAGTGGTCTTTG  950

seq1  TCTTACAGAA--CTTTCTCAATATCATGAAGTCAAATTTATTGATTATGA  996
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGAAACTTTTCTCAATATCATGAAGTCAAATTTATTGATTATGA  1000

seq1  TTCTTCATCCTTGTGATTTGGTGTTCTCTTCAGGATATTGTCTCCTGAGC  1046
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCTTCATCCTTGTGATTTGGTGTTCTCTTCA-GATATTGTCTCCTGAGC  1049

seq1  CA  1048
      ||
seq2  CA  1051