BAC Information

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BAC

Clone NameB6Ng01-268G22
Chromosome12 (Build37)
Map Location 58,752,157 - 58,955,993
singlet/doubletdoublet
Overlap geneBC042761
Upstream genePax9, Slc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600
Downstream geneSstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268G22.bB6Ng01-268G22.g
ACCGA071289GA071290
length1,2051,117
definitionB6Ng01-268G22.b B6Ng01-268G22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,954,792 - 58,955,993)(58,752,157 - 58,753,281)
sequence
gaattccatatgtaaatcaggctctcctcaaactcgcagagatttatctg
ttctgcctccagagagctgagattaaaggactgtgtcatcattcctggcc
catatcaaatacaagcagaatgagatgtactgttcaaatgtgaacatgta
tttttcaagatacaatgtcacagtaccaagttcagattagagagactgga
caaaagattggaagtgtcatcgtcccatggagccttctcctctgtttgtc
ctgcatccactgatttcatatgcgaatcatctaagagcgaagaaattaga
aggaatacactcaacccatggcttttactttagatgcacaaaatatgaca
taaagatcatttggcgagtggcctgatttagagtcatacactaagaatag
actctgagacatgcataggctcgggggtagaggcctatttgttacggttt
ggttgtcttgcctgaaagccattgtttgcctggatttaatcttgagttct
tcacttgagatttttttaaaccaaaagatttccagaaaattagtctgatt
tccaggggagagctaatagagtccaggctctgtgcaacattctatttcat
ttcttcttatatttgttgtatattaataatagaagagtggtgtctgagtt
cagaaaggttttaaaaaggacaagtgtatgttttctaggcagagctcttg
ctgcaaccacagggggaaagaacagccaggacaaatcgcctttagaccct
gagctccaggctcggcaatcctaaacaaataactacatgaaaggtggcca
ttgctgcagaagtctgcagcagagtgtgggatacactctagcttgtactc
tggagatatattcttccttctttctatagctgactgcttgctttgcttct
tattatccaattcaccattttctctgctctttaataagattccatcctgc
ttctggcaaatcatgtgtgctaataatttccagctcagtctctctatggc
ttgtgcgaagggatggtttgtgctttgctaaaagttcatttgctggatag
taattttggtcagagaattagcaatttttgtaagcagaatggtgggtaat
aactcatcaacaccttgtaaggtttctatgcttctgcctgcctgctgctg
atgaaaccagtgcacttgaacagctgttctaagtgcctatttttgccatg
tgttt

gaattcactgtctcttcagaaatgcattatttgggaaagtttctgatgat
ttaaatgtcttctttactaatttttgagttatttatgccaagttgttttt
gagtcaactgataactcattacagaaagccgtgtgttttatgagacacat
gttctatgtatagagttggccatgtttttctgtcagttttgagctctatt
tgtaatgttgcagtttccttcctgtttcttacaagttttatatctataat
aggatttttaaaagcaatttaactttcttgtttcttttctttgttttcag
ttgtaaactctatcttttatcaaactaccatacttgcaccagtagagaac
aaccactgctggtacatttttactaagatttatgatattcagtgtccaaa
ctatttattgtggcctaccggcaggaaaagaaagagtatattctatctgc
tttgattaaaaatattttggattaattattacatcattgtgatactgtga
agtatcacagtcttttctattttggtttttttacttcatcacttattata
gaatgtttatattctgtttaataattgtattattttctactgaaatttaa
ttaggttctttttgttttaaagtaatataaatataacttaagacttttgt
ataaagcttttagtttattgcaccaattcttacttagtgtcttcatttat
ttttgaaacagctcttttcttgatggggggatagttttcattttcttttg
cttataccacttaggtaggaaggggttttaaaagcttaaagaagttttga
tactgttttctttaaagtttattcttaatatttaataacatacagtatat
ctttagactacatgtgtttttgaaattggttgctatttgtattgtggttt
attgaatatcccagcatttgttgactaagccgatggcattgtttgaagtt
tccttgttagcactgagccagcctaagcagaacatagttgtggaatcaga
gcctggatttgaatccctttctgctctgaaatccattgtttttgtatgta
agtaagccttgagatttaagagcctcacactgttgcagataactgaagta
ccagctggcttaataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_58954792_58955993
seq2: B6Ng01-268G22.b_47_1251 (reverse)

seq1  AAACA-ATGGCAAATA---GCAC-TAGAACAGCTG-TCAAGTGCACCTGG  44
      ||||| |||||||| |   |||| ||||||||||| ||||||||| ||||
seq2  AAACACATGGCAAAAATAGGCACTTAGAACAGCTGTTCAAGTGCA-CTGG  49

seq1  TTTTCATTCCAGCAGCA-GCA-GCAGAAGCATAGAAA-CTTACAAGGTG-  90
       ||||||  |||||||| ||| ||||||||||||||| ||||||||||| 
seq2  -TTTCAT--CAGCAGCAGGCAGGCAGAAGCATAGAAACCTTACAAGGTGT  96

seq1  TGATGAGTTATTACCCACCA-TCTGCTTTACAAAA--TGCTAATTCTTCT  137
      |||||||||||||||||||| ||||| ||||||||  ||||||||| |||
seq2  TGATGAGTTATTACCCACCATTCTGC-TTACAAAAATTGCTAATTC-TCT  144

seq1  TGAACCAAAATTACTATCCAGCAAATGAACTTTTAGCAAAGCAACAAACC  187
         ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  --GACCAAAATTACTATCCAGCAAATGAACTTTTAGCAAAGC-ACAAACC  191

seq1  ATCCC-TCGCACAAGGCCATAGAGAGACCTGAGCTGGAAATTATTAGCAC  236
      ||||| |||||||| |||||||||||| ||||||||||||||||||||||
seq2  ATCCCTTCGCACAA-GCCATAGAGAGA-CTGAGCTGGAAATTATTAGCAC  239

seq1  ACATGATTTGCCAGAAGCAGGATGGAATCTTATTAAAGAGCAGAGAAAAT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTTGCCAGAAGCAGGATGGAATCTTATTAAAGAGCAGAGAAAAT  289

seq1  GGTGAATTGGATAATAAGAAGCAAAGCAAGCAGTCAGCTATAGAAAGAAG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTGGATAATAAGAAGCAAAGCAAGCAGTCAGCTATAGAAAGAAG  339

seq1  GAAGAATATATCTCCAGAGTACAAGCTAGAGTGTATCCCACACTCTGCTG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATATATCTCCAGAGTACAAGCTAGAGTGTATCCCACACTCTGCTG  389

seq1  CAGACTTCTGCAGCAATGGCCACCTTTCATGTAGTTATTTGTTTAGGATT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTCTGCAGCAATGGCCACCTTTCATGTAGTTATTTGTTTAGGATT  439

seq1  GCCGAGCCTGGAGCTCAGGGTCTAAAGGCGATTTGTCCTGGCTGTTCTTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGCCTGGAGCTCAGGGTCTAAAGGCGATTTGTCCTGGCTGTTCTTT  489

seq1  CCCCCTGTGGTTGCAGCAAGAGCTCTGCCTAGAAAACATACACTTGTCCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGTGGTTGCAGCAAGAGCTCTGCCTAGAAAACATACACTTGTCCT  539

seq1  TTTTAAAACCTTTCTGAACTCAGACACCACTCTTCTATTATTAATATACA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACCTTTCTGAACTCAGACACCACTCTTCTATTATTAATATACA  589

seq1  ACAAATATAAGAAGAAATGAAATAGAATGTTGCACAGAGCCTGGACTCTA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATAAGAAGAAATGAAATAGAATGTTGCACAGAGCCTGGACTCTA  639

seq1  TTAGCTCTCCCCTGGAAATCAGACTAATTTTCTGGAAATCTTTTGGTTTA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCTCCCCTGGAAATCAGACTAATTTTCTGGAAATCTTTTGGTTTA  689

seq1  AAAAAATCTCAAGTGAAGAACTCAAGATTAAATCCAGGCAAACAATGGCT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCTCAAGTGAAGAACTCAAGATTAAATCCAGGCAAACAATGGCT  739

seq1  TTCAGGCAAGACAACCAAACCGTAACAAATAGGCCTCTACCCCCGAGCCT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCAAGACAACCAAACCGTAACAAATAGGCCTCTACCCCCGAGCCT  789

seq1  ATGCATGTCTCAGAGTCTATTCTTAGTGTATGACTCTAAATCAGGCCACT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTCTCAGAGTCTATTCTTAGTGTATGACTCTAAATCAGGCCACT  839

seq1  CGCCAAATGATCTTTATGTCATATTTTGTGCATCTAAAGTAAAAGCCATG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAATGATCTTTATGTCATATTTTGTGCATCTAAAGTAAAAGCCATG  889

seq1  GGTTGAGTGTATTCCTTCTAATTTCTTCGCTCTTAGATGATTCGCATATG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGTGTATTCCTTCTAATTTCTTCGCTCTTAGATGATTCGCATATG  939

seq1  AAATCAGTGGATGCAGGACAAACAGAGGAGAAGGCTCCATGGGACGATGA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGTGGATGCAGGACAAACAGAGGAGAAGGCTCCATGGGACGATGA  989

seq1  CACTTCCAATCTTTTGTCCAGTCTCTCTAATCTGAACTTGGTACTGTGAC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCAATCTTTTGTCCAGTCTCTCTAATCTGAACTTGGTACTGTGAC  1039

seq1  ATTGTATCTTGAAAAATACATGTTCACATTTGAACAGTACATCTCATTCT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATCTTGAAAAATACATGTTCACATTTGAACAGTACATCTCATTCT  1089

seq1  GCTTGTATTTGATATGGGCCAGGAATGATGACACAGTCCTTTAATCTCAG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTATTTGATATGGGCCAGGAATGATGACACAGTCCTTTAATCTCAG  1139

seq1  CTCTCTGGAGGCAGAACAGATAAATCTCTGCGAGTTTGAGGAGAGCCTGA  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGAGGCAGAACAGATAAATCTCTGCGAGTTTGAGGAGAGCCTGA  1189

seq1  TTTACATATGGAATTC  1202
      ||||||||||||||||
seq2  TTTACATATGGAATTC  1205


seq1: chr12_58752157_58753281
seq2: B6Ng01-268G22.g_63_1179

seq1  GAATTCACTGTCTCTTCAGAAATGCATTATTTGGGAAAGTTTCTGATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCTCTTCAGAAATGCATTATTTGGGAAAGTTTCTGATGAT  50

seq1  TTAAATGTCTTCTTTACTAATTTTTGAGTTATTTATGCCAAGTTGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTCTTCTTTACTAATTTTTGAGTTATTTATGCCAAGTTGTTTTT  100

seq1  GAGTCAACTGATAACTCATTACAGAAAGCCGTGTGTTTTATGAGACACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAACTGATAACTCATTACAGAAAGCCGTGTGTTTTATGAGACACAT  150

seq1  GTTCTATGTATAGAGTTGGCCATGTTTTTCTGTCAGTTTTGAGCTCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATGTATAGAGTTGGCCATGTTTTTCTGTCAGTTTTGAGCTCTATT  200

seq1  TGTAATGTTGCAGTTTCCTTCCTGTTTCTTACAAGTTTTATATCTATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGTTGCAGTTTCCTTCCTGTTTCTTACAAGTTTTATATCTATAAT  250

seq1  AGGATTTTTAAAAGCAATTTAACTTTCTTGTTTCTTTTCTTTGTTTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTTAAAAGCAATTTAACTTTCTTGTTTCTTTTCTTTGTTTTCAG  300

seq1  TTGTAAACTCTATCTTTTATCAAACTACCATACTTGCACCAGTAGAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAACTCTATCTTTTATCAAACTACCATACTTGCACCAGTAGAGAAC  350

seq1  AACCACTGCTGGTACATTTTTACTAAGATTTATGATATTCAGTGTCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTGCTGGTACATTTTTACTAAGATTTATGATATTCAGTGTCCAAA  400

seq1  CTATTTATTGTGGCCTACCGGCAGGAAAAGAAAGAGTATATTCTATCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATTGTGGCCTACCGGCAGGAAAAGAAAGAGTATATTCTATCTGC  450

seq1  TTTGATTAAAAATATTTTGGATTAATTATTACATCATTGTGATACTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTAAAAATATTTTGGATTAATTATTACATCATTGTGATACTGTGA  500

seq1  AGTATCACAGTCTTTTCTATTTTGGTTTTTTTACTTCATCACTTATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCACAGTCTTTTCTATTTTGGTTTTTTTACTTCATCACTTATTATA  550

seq1  GAATGTTTATATTCTGTTTAATAATTGTATTATTTTCTACTGAAATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTATATTCTGTTTAATAATTGTATTATTTTCTACTGAAATTTAA  600

seq1  TTAGGTTCTTTTTGTTTTAAAGTAATATAAATATAACTTAAGACTTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTCTTTTTGTTTTAAAGTAATATAAATATAACTTAAGACTTTTGT  650

seq1  ATAAAGCTTTTAGTTTATTGCACCAATTCTTACTTAGTGTCTTCATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTTTTAGTTTATTGCACCAATTCTTACTTAGTGTCTTCATTTAT  700

seq1  TTTTGAAACAGCTCTTTTCTTGATGGGGGGATAGTTTTCATTTTCTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAACAGCTCTTTTCTTGATGGGGGGATAGTTTTCATTTTCTTTTG  750

seq1  CTTATACCACTTAGGTAGGAAGGGGTTTTAAAAGCTTAAAGAAGTTTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACCACTTAGGTAGGAAGGGGTTTTAAAAGCTTAAAGAAGTTTTGA  800

seq1  TACTGTTTTCTTTAAAGTTTATTCTTAATATTTAATAACATACAGTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTTCTTTAAAGTTTATTCTTAATATTTAATAACATACAGTATAT  850

seq1  CTTTAGACTACATGTGTTTTTGAAATTGGTTGCTATTTGTATTGTGGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGACTACATGTGTTTTTGAAATTGGTTGCTATTTGTATTGTGGTTT  900

seq1  ATTGAATATCCCAGCATTTGTTGACTAAGCCGATGGCATTGTTTGAAGGT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTGAATATCCCAGCATTTGTTGACTAAGCCGATGGCATTGTTTGAAGTT  950

seq1  TCCTTGTTAGCACTGAGCCAGCCTAAGCAGAACATAGGTTGTGGAATCAG  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCCTTGTTAGCACTGAGCCAGCCTAAGCAGAACATA-GTTGTGGAATCAG  999

seq1  AGCCTGGGATTTGAATCCCTTTCTGCTCCTGAAATCCATTGTTTTTGTAT  1050
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCCT-GGATTTGAATCCCTTTCTGCT-CTGAAATCCATTGTTTTTGTAT  1047

seq1  GTAAAGTAAGCTTTGAGGATTTAAGGAGGCCTCACACTG-TGCAGATAAA  1099
      || |||||||| |||| ||||||||   ||||||||||| ||||||| ||
seq2  GT-AAGTAAGCCTTGA-GATTTAAG--AGCCTCACACTGTTGCAGAT-AA  1092

seq1  CTGAAGTACCCAGCTGGCTTAATAGA  1125
      |||||||| |||||||||||||||||
seq2  CTGAAGTA-CCAGCTGGCTTAATAGA  1117


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