BAC Information

Click to search

BAC

Clone NameB6Ng01-269B10
Chromosome12 (Build37)
Map Location 8,958,872 - 9,071,874
singlet/doubletdoublet
Overlap geneMatn3, Wdr35, Ttc32
Upstream geneApob, 1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a
Downstream geneLOC633030, LOC100042238, Osr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269B10.bB6Ng01-269B10.g
ACCGA071777GA071778
length1,1731,067
definitionB6Ng01-269B10.b B6Ng01-269B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,958,872 - 8,960,029)(9,070,821 - 9,071,874)
sequence
gaattcaccaaggtgaagacctttgtctcccgcatcatcgacactctgga
catcggggccacagacacgagggtggctgtggtgaactatgccagcactg
tgaagatagagttccagctcaacacctattccgacaagcaggccctgaaa
caggctgtggcacggatcacacccttgtcaacaggcaccatgtcagggct
agctatccagacagcgatggaggaagccttcactgtggaggccggggctc
gggggcccatgtctaacatccccaaggtagctattatcgtgacagatggg
aggccgcaggaccaggtgaatgaggtggctgctcgagcccgtgcatctgg
cattgagctgtatgctgtgggtgtggaccgggcagatatggagtccctca
agatgatggctagcaagcccctggaagagcacgtcttctacgtggagacc
tacggggtcattgagaagctttctgctagattccaggaaaccttttgtgg
taagcagccaggtcttcgcttccagctagcgaggataaactataaagttt
gtagtttagcttctagctagcgaggatgttatagtctgtagtttgcgcga
tcggaaattggtttttaaagatttatctttaattatgtttatatgtgcac
atgagtgtggggactggatgaggtcagtgacctaaaattccctggagctg
gagtcgtatgcagtcgtgagccacccatgatgggcactgggaaccaaagt
tgggccttctgcaagagaagtgtgtgctcttcagtgctgagccaacattc
cagccccctgaaaaaagaagtttattcattttggggagttgggggataga
aattttctgaaagaatcatacacatgcaatgtttttttggtgcttttttg
gttttttttctaaaccaacctaaacacatgggaggttggtctggaagaca
agggctgtactattatgtacttggggttggctcataaacctttcatggtt
ggagttaagaacatgttaaagttctggaaaataacctagaataaactaat
ccctaccatctccctggaggggtcggaaaaataaaaactcaagctcccga
actgagccattctctgctggcttccgttcttcacaatacatatcctcgct
ctcctcggaagggttccgtatga
gaattccaaaatagtgttgagatggttcaaagggacatactcaacaaacc
gcgagcacaggaggggccagcacaatgcaagggttctcccactcactcca
ttacctcagtgctccagggaaacagggggttctaggacttttctcaaggt
tgtacagctagtaacacgggcttctctcgcgtctggtacctcatgccatg
ctgtgggacagtagacatcctgaccccttaggttcagtcatctggttgca
tatgaaatccagacatgagtctcagacccagcatcccaaataccgtcagt
aaaatgtgtgagaagatgggctatccctatacactgctgctgactgcgtg
tatctgccaatatttgtccgcagtatattggggttgagaagtgtgatctt
catggctaagtcaggagggcagagagcactgtcccaagagaaggtttatg
atctctaaggtagattttgatgaaaggaagatttgggttctccctccctc
ccttcctcccttcctccctctcaccacacgaggtcttctccatttaatga
ttcaacaaaatgtcccaaacatggctcttgaccttgaacttccagtctcc
aaaccagaagctaacaaagccctgttgttcgttccccagtctgtgctgtt
ctgctacagcaggcaagaatatacaccacactgaggaaagaggccgtgag
agctgagagctcaaggggcccccgtgcaattccaggcacctcagaggaag
taccagggcatcattaataccagggtgggtcagtgctataaaggaggctg
caggtaattcatacactgcagaggttgctgatggcccagatacagtgtgt
gtggagaaagccctatccctacagccacagggcctccaggagacagagat
gacttcttcaaaaccagggatctaattctgactcctcttgaccttggagg
acagcaacaaggcagtgaggaaagagacctggttctcatctccagcctct
caacaaactaggaggatcctcagaaggccatggtttttcttcagagcctt
gttgcttcccttaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_8958872_8960029
seq2: B6Ng01-269B10.b_47_1219

seq1  GAATTCACCAAGGTGAAGACCTTTGTCTCCCGCATCATCGACACTCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAGGTGAAGACCTTTGTCTCCCGCATCATCGACACTCTGGA  50

seq1  CATCGGGGCCACAGACACGAGGGTGGCTGTGGTGAACTATGCCAGCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGGGCCACAGACACGAGGGTGGCTGTGGTGAACTATGCCAGCACTG  100

seq1  TGAAGATAGAGTTCCAGCTCAACACCTATTCCGACAAGCAGGCCCTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATAGAGTTCCAGCTCAACACCTATTCCGACAAGCAGGCCCTGAAA  150

seq1  CAGGCTGTGGCACGGATCACACCCTTGTCAACAGGCACCATGTCAGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTGGCACGGATCACACCCTTGTCAACAGGCACCATGTCAGGGCT  200

seq1  AGCTATCCAGACAGCGATGGAGGAAGCCTTCACTGTGGAGGCCGGGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCCAGACAGCGATGGAGGAAGCCTTCACTGTGGAGGCCGGGGCTC  250

seq1  GGGGGCCCATGTCTAACATCCCCAAGGTAGCTATTATCGTGACAGATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCCATGTCTAACATCCCCAAGGTAGCTATTATCGTGACAGATGGG  300

seq1  AGGCCGCAGGACCAGGTGAATGAGGTGGCTGCTCGAGCCCGTGCATCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGCAGGACCAGGTGAATGAGGTGGCTGCTCGAGCCCGTGCATCTGG  350

seq1  CATTGAGCTGTATGCTGTGGGTGTGGACCGGGCAGATATGGAGTCCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGCTGTATGCTGTGGGTGTGGACCGGGCAGATATGGAGTCCCTCA  400

seq1  AGATGATGGCTAGCAAGCCCCTGGAAGAGCACGTCTTCTACGTGGAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATGGCTAGCAAGCCCCTGGAAGAGCACGTCTTCTACGTGGAGACC  450

seq1  TACGGGGTCATTGAGAAGCTTTCTGCTAGATTCCAGGAAACCTTTTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGGTCATTGAGAAGCTTTCTGCTAGATTCCAGGAAACCTTTTGTGG  500

seq1  TAAGCAGCCAGGTCTTCGCTTCCAGCTAGCGAGGATAAACTATAAAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGCCAGGTCTTCGCTTCCAGCTAGCGAGGATAAACTATAAAGTTT  550

seq1  GTAGTTTAGCTTCTAGCTAGCGAGGATGTTATAGTCTGTAGTTTGCGCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTAGCTTCTAGCTAGCGAGGATGTTATAGTCTGTAGTTTGCGCGA  600

seq1  TCGGAAATTGGTTTTTAAAGATTTATCTTTAATTATGTTTATATGTGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAATTGGTTTTTAAAGATTTATCTTTAATTATGTTTATATGTGCAC  650

seq1  ATGAGTGTGGGGACTGGATGAGGTCAGTGACCTAAAATTCCCTGGAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTGGGGACTGGATGAGGTCAGTGACCTAAAATTCCCTGGAGCTG  700

seq1  GAGTCGTATGCAGTCGTGAGCCACCCATGATGGGCACTGGGAACCAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGTATGCAGTCGTGAGCCACCCATGATGGGCACTGGGAACCAAAGT  750

seq1  TGGGCCTTCTGCAAGAGAAGTGTGTGCTCTTCAGTGCTGAGCCAACATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTCTGCAAGAGAAGTGTGTGCTCTTCAGTGCTGAGCCAACATTC  800

seq1  CAGCCCCCTGAAAAAAGAAGTTTATTCATTTTGGGGAGTTGGGGGATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCTGAAAAAAGAAGTTTATTCATTTTGGGGAGTTGGGGGATAGA  850

seq1  AATTTTCTGAAAGAATCATACACATGCAATGTTTTTTTGGTGCTTTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTGAAAGAATCATACACATGCAATGTTTTTTTGGTGCTTTTTTG  900

seq1  TTTTTTTTCTTAAACCAACCTAAACACATGG--AGTTGGTCTGGAAGAAC  948
       |||||||  |||||||||||||||||||||   ||||||||||||||  
seq2  GTTTTTTTTCTAAACCAACCTAAACACATGGGAGGTTGGTCTGGAAGACA  950

seq1  AAGGCTGTACTA-TATGTAACTTGGGTT-GCTCATAAAACCTTCAT-GTT  995
      | |||||||||| ||||||  | ||||| ||||||||| | ||||| |||
seq2  AGGGCTGTACTATTATGTACTTGGGGTTGGCTCATAAACCTTTCATGGTT  1000

seq1  TGAGTTA--GACATGTT-AAGTTCTGG-AAATAACC-AGAATAAAC-AAT  1039
       ||||||   ||||||| ||||||||| |||||||| ||||||||| |||
seq2  GGAGTTAAGAACATGTTAAAGTTCTGGAAAATAACCTAGAATAAACTAAT  1050

seq1  -CCTACC-TCTCCCTGAAGGGGTCGGAAA---TAAAACCCAAGCCCCCAA  1084
       |||||| |||||||| ||||||||||||    ||||| ||||| ||| |
seq2  CCCTACCATCTCCCTGGAGGGGTCGGAAAAATAAAAACTCAAGCTCCCGA  1100

seq1  ACTGAAGCCA-TCTCTCCT-GCCTCCCTTCTCCACCATTACCATTCCTCC  1132
      |||| ||||| ||||| || || ||| |||| || || |||   |||| |
seq2  ACTG-AGCCATTCTCTGCTGGCTTCCGTTCTTCA-CAATACATATCCT-C  1147

seq1  CCTCTCCTCGGAAGGTTTCCTTATGA  1158
       |||||||||||||| |||| |||||
seq2  GCTCTCCTCGGAAGGGTTCCGTATGA  1173

seq1: chr12_9070821_9071874
seq2: B6Ng01-269B10.g_68_1134 (reverse)

seq1  TTATT-AGGGAAGC-ACAAGGCTCTG-AGAAAA--CATTGCC-TCTGAGG  44
      ||||| |||||||| ||||||||||| ||||||  ||| ||| |||||||
seq2  TTATTAAGGGAAGCAACAAGGCTCTGAAGAAAAACCATGGCCTTCTGAGG  50

seq1  AT-CTCCTAGTTTG-TGAGA-GCTGGAGATGAG-ACCAGGTCTCTTTCCT  90
      || ||||||||||| ||||| |||||||||||| ||||||||||||||||
seq2  ATCCTCCTAGTTTGTTGAGAGGCTGGAGATGAGAACCAGGTCTCTTTCCT  100

seq1  CACTGCC-TGTTGCTGTCCTCCAAGGTCAAGAGGAGTCAGAATTAGAT-C  138
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  CACTGCCTTGTTGCTGTCCTCCAAGGTCAAGAGGAGTCAGAATTAGATCC  150

seq1  CTGGTTTTGAAG-AGTCATCTCTGTCTCCTGGAGGCCCTGTGGCTGTAGG  187
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTGAAGAAGTCATCTCTGTCTCCTGGAGGCCCTGTGGCTGTAGG  200

seq1  GATAGGGCCTTCTCCACACACACTGTATCTGGGCCATCAGCAACCTCTGC  237
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGCTTTCTCCACACACACTGTATCTGGGCCATCAGCAACCTCTGC  250

seq1  AGTGTATGAATTACCTGCAGCCTCCTTTATAGCACTGACCCACCCTGGTA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATGAATTACCTGCAGCCTCCTTTATAGCACTGACCCACCCTGGTA  300

seq1  TTAATGATGCCCTGGTACTTCCTCTGAGGTGCCTGGAATTGCACGGGGGC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGATGCCCTGGTACTTCCTCTGAGGTGCCTGGAATTGCACGGGGGC  350

seq1  CCCTTGAGCTCTCAGCTCTCACGGCCTCTTTCCTCAGTGTGGTGTATATT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGAGCTCTCAGCTCTCACGGCCTCTTTCCTCAGTGTGGTGTATATT  400

seq1  CTTGCCTGCTGTAGCAGAACAGCACAGACTGGGGAACGAACAACAGGGCT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGCTGTAGCAGAACAGCACAGACTGGGGAACGAACAACAGGGCT  450

seq1  TTGTTAGCTTCTGGTTTGGAGACTGGAAGTTCAAGGTCAAGAGCCATGTT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGCTTCTGGTTTGGAGACTGGAAGTTCAAGGTCAAGAGCCATGTT  500

seq1  TGGGACATTTTGTTGAATCATTAAATGGAGAAGACCTCGTGTGGTGAGAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACATTTTGTTGAATCATTAAATGGAGAAGACCTCGTGTGGTGAGAG  550

seq1  GGAGGAAGGGAGGAAGGGAGGGAGGGAGAACCCAAATCTTCCTTTCATCA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGGGAGGAAGGGAGGGAGGGAGAACCCAAATCTTCCTTTCATCA  600

seq1  AAATCTACCTTAGAGATCATAAACCTTCTCTTGGGACAGTGCTCTCTGCC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACCTTAGAGATCATAAACCTTCTCTTGGGACAGTGCTCTCTGCC  650

seq1  CTCCTGACTTAGCCATGAAGATCACACTTCTCAACCCCAATATACTGCGG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACTTAGCCATGAAGATCACACTTCTCAACCCCAATATACTGCGG  700

seq1  ACAAATATTGGCAGATACACGCAGTCAGCAGCAGTGTATAGGGATAGCCC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATTGGCAGATACACGCAGTCAGCAGCAGTGTATAGGGATAGCCC  750

seq1  ATCTTCTCACACATTTTACTGACGGTATTTGGGATGCTGGGTCTGAGACT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCACACATTTTACTGACGGTATTTGGGATGCTGGGTCTGAGACT  800

seq1  CATGTCTGGATTTCATATGCAACCAGATGACTGAACCTAAGGGGTCAGGA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGGATTTCATATGCAACCAGATGACTGAACCTAAGGGGTCAGGA  850

seq1  TGTCTACTGTCCCACAGCATGGCATGAGGTACCAGACGCGAGAGAAGCCC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACTGTCCCACAGCATGGCATGAGGTACCAGACGCGAGAGAAGCCC  900

seq1  GTGTTACTAGCTGTACAACCTTGAGAAAAGTCCTAGAACCCCCTGTTTCC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACTAGCTGTACAACCTTGAGAAAAGTCCTAGAACCCCCTGTTTCC  950

seq1  CTGGAGCACTGAGGTAATGGAGTGAGTGGGAGAACCCTTGCATTGTGCTG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCACTGAGGTAATGGAGTGAGTGGGAGAACCCTTGCATTGTGCTG  1000

seq1  GCCCCTCCTGTGCTCGCGGTTTGTTGAGTATGTCCCTTTGAACCATCTCA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCTGTGCTCGCGGTTTGTTGAGTATGTCCCTTTGAACCATCTCA  1050

seq1  ACACTATTTTGGAATTC  1054
      |||||||||||||||||
seq2  ACACTATTTTGGAATTC  1067