BAC Information

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BAC

Clone NameB6Ng01-269D23
Chromosome12 (Build37)
Map Location 44,701,825 - 44,841,676
singlet/doubletdoublet
Overlap geneLOC100039059
Upstream genenone
Downstream geneENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269D23.bB6Ng01-269D23.g
ACCGA071897GA071898
length1,1861,058
definitionB6Ng01-269D23.b B6Ng01-269D23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,840,487 - 44,841,676)(44,701,825 - 44,702,886)
sequence
gaattccagagaatattacaattgaagaaaaaagtgactactctaatgct
tgactctattgtataatgaatattgacacctgggaatattgctattaaaa
tcacagggcctcataaagaatagtaaaatgggtgtggactatgatcaagt
aggtgatgtccataagtgcctgacaggcatctctccggatatgatactaa
gaagtataaagaaggagacagaacatatagacttagatttatttagaata
ttatgttagaaaatgttaatggaaattctgtgatcagaagacaacatgta
tgttttagaattgttacttttgctgagacttactcactctgtgggcattt
atatctcctaggatagtcttttagtacactttagcatttgagttctaaaa
atctagactaaatgatggagatccatgattagtctacatttatacatttt
catgtaaccccttggcaccatattttctgatctttatggacacagctcca
gtcatttttatacatgagctcgtgctctagtttagtctaccagttactga
acatttctctggccttgtacatattgagctttctttctctaataccacat
ttctatcaaactttacacgacagttgaaatgctacctttccttaaaggaa
cattatttaaactgaccttccttttatcccctcagatattccagtttcaa
tattttattagagtgaaaaattcaaacattttaaagatcaggcttttaaa
aaaaagaaaaatggagaggggaatttaatttagaataatagaaaagtaaa
cattgtaaaaataaagaatttttgatttaactaatctatgtataatacaa
tttttgtattaaattctcagctaatattgagagaataatgaaattaaaca
caattttgtagttacctggtaaatgagcagcaggaaaatatcttaaaaca
ctgcatattagccacaccatatgtaccttttctgaaacttccttttcact
agagaaaattattctctattttctagatacattcctatgactttcttttg
tagttcactgcataaaaatgtacttctaaatgtgtgttaactttcttgtg
attatgccatccaatattgtgaaatatgtctggttaacttcttgtgactt
attatcctcagtatcatatatcaatatttattggag

gaattctcagtaaagatagaatgacagccctctggctctggctcctgtag
aaagatacatttggtgacaatgatgaatagctccacagtctggcaaagtc
aggctggggactatgtgaagtacaactggtctgaatgacagagagaaagc
agacaggagcatttcctgatgcagactgacaggagcttggagtgagggta
tatttggaaaattgtaggatatcataccttttggggaactgcccagctca
aagacattaaagtttcactcaaaacttgacacattaccatacaacagtat
aatattcgtagagatgctgggttttaatcttagatcattcaaactatata
ataaagagattgaaattatgatttttattgaacttcatatactttaaata
gaaatccttaacctagatgtaatagttcaaaaataaaagtaaaatgctca
tatatctagcacccagatcccaaggtacagatttatatcaagttttaaaa
actgactgctaatataggagctgcatttcctaataagacataattgtcta
ataatatttcataaccctttcttccaattgtgtttattctaataaaaggg
tcttgctttctattacatattatcaattcacatgttatggaaaacagtaa
ataaaatataacaaaaaatataagcagtaaatataatagatgatgttatt
tatcatcattaatcaaatcagggaatcaaagctgcttaggaaagcaggta
taagatgtataaaaatatcggaaagtttgtagaaccttaatatcaagaga
gtgacatcagtgcatttggtagaacattagatttgttcattcctgctgtt
taaaaaccgtgttaataaggatctatacacagtttataacactatgatta
ttttttaaatatatttactaatgtataagtggtaaaggaggtatctacct
atataatagtgatatatcataacttacgcagtcaatttttacatttaaac
gctacagaaaaacagcaaagtagctcagccctgtaaaatcgtcgtgactt
ttacttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_44840487_44841676
seq2: B6Ng01-269D23.b_47_1232 (reverse)

seq1  CTCCAAATAATATGGATATAGTATACTGAGGGAATAAATAAGTCACAAGA  50
      ||||||  ||||| ||||||  |||||||||  || ||||||||||||||
seq2  CTCCAATAAATATTGATATATGATACTGAGG--AT-AATAAGTCACAAGA  47

seq1  AG-TAAACAGACATTATTTCAC-ATATTTGATTGCATAATCACAAGAAAG  98
      || ||| |||||| |||||||| ||||| ||| |||||||||||||||||
seq2  AGTTAACCAGACA-TATTTCACAATATTGGATGGCATAATCACAAGAAAG  96

seq1  -TAACACACCATTTAGAAGTACATTTTTATGCAGTGAACTAC-AAAGAAA  146
       ||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  TTAACACA-CATTTAGAAGTACATTTTTATGCAGTGAACTACAAAAGAAA  145

seq1  GTCATAGGAATGTTATCTAAGAAATAGAGATAATTTTTCTCTTAGTGGAA  196
      |||||||||||| ||||||  |||||||||  | ||||||| ||||| ||
seq2  GTCATAGGAATG-TATCTAGAAAATAGAGAATAATTTTCTC-TAGTGAAA  193

seq1  AGGAAGTTTTCAGAAAAGGTACATATGGTGTGGCTAATATGCAGTGTTTT  246
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAG-TTTCAGAAAAGGTACATATGGTGTGGCTAATATGCAGTGTTTT  242

seq1  AAGATATTTTCCTGCTGCTCATTTACCAGGTAACTACAAAATTGTGTTTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTTCCTGCTGCTCATTTACCAGGTAACTACAAAATTGTGTTTA  292

seq1  ATTTCATTATTCTCTCAATATTAGCTGAGAATTTAATACAAAAATTGTAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTATTCTCTCAATATTAGCTGAGAATTTAATACAAAAATTGTAT  342

seq1  TATACATAGATTAGTTAAATCAAAAATTCTTTATTTTTACAATGTTTACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATAGATTAGTTAAATCAAAAATTCTTTATTTTTACAATGTTTACT  392

seq1  TTTCTATTATTCTAAATTAAATTCCCCTCTCCATTTTTCTTTTTTTTAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTATTCTAAATTAAATTCCCCTCTCCATTTTTCTTTTTTTTAAA  442

seq1  AGCCTGATCTTTAAAATGTTTGAATTTTTCACTCTAATAAAATATTGAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATCTTTAAAATGTTTGAATTTTTCACTCTAATAAAATATTGAAA  492

seq1  CTGGAATATCTGAGGGGATAAAAGGAAGGTCAGTTTAAATAATGTTCCTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATATCTGAGGGGATAAAAGGAAGGTCAGTTTAAATAATGTTCCTT  542

seq1  TAAGGAAAGGTAGCATTTCAACTGTCGTGTAAAGTTTGATAGAAATGTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAGGTAGCATTTCAACTGTCGTGTAAAGTTTGATAGAAATGTGG  592

seq1  TATTAGAGAAAGAAAGCTCAATATGTACAAGGCCAGAGAAATGTTCAGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGAAAGAAAGCTCAATATGTACAAGGCCAGAGAAATGTTCAGTA  642

seq1  ACTGGTAGACTAAACTAGAGCACGAGCTCATGTATAAAAATGACTGGAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAGACTAAACTAGAGCACGAGCTCATGTATAAAAATGACTGGAGC  692

seq1  TGTGTCCATAAAGATCAGAAAATATGGTGCCAAGGGGTTACATGAAAATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCATAAAGATCAGAAAATATGGTGCCAAGGGGTTACATGAAAATG  742

seq1  TATAAATGTAGACTAATCATGGATCTCCATCATTTAGTCTAGATTTTTAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGTAGACTAATCATGGATCTCCATCATTTAGTCTAGATTTTTAG  792

seq1  AACTCAAATGCTAAAGTGTACTAAAAGACTATCCTAGGAGATATAAATGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAATGCTAAAGTGTACTAAAAGACTATCCTAGGAGATATAAATGC  842

seq1  CCACAGAGTGAGTAAGTCTCAGCAAAAGTAACAATTCTAAAACATACATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGTGAGTAAGTCTCAGCAAAAGTAACAATTCTAAAACATACATG  892

seq1  TTGTCTTCTGATCACAGAATTTCCATTAACATTTTCTAACATAATATTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCTGATCACAGAATTTCCATTAACATTTTCTAACATAATATTCT  942

seq1  AAATAAATCTAAGTCTATATGTTCTGTCTCCTTCTTTATACTTCTTAGTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCTAAGTCTATATGTTCTGTCTCCTTCTTTATACTTCTTAGTA  992

seq1  TCATATCCGGAGAGATGCCTGTCAGGCACTTATGGACATCACCTACTTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCCGGAGAGATGCCTGTCAGGCACTTATGGACATCACCTACTTGA  1042

seq1  TCATAGTCCACACCCATTTTACTATTCTTTATGAGGCCCTGTGATTTTAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTCCACACCCATTTTACTATTCTTTATGAGGCCCTGTGATTTTAA  1092

seq1  TAGCAATATTCCCAGGTGTCAATATTCATTATACAATAGAGTCAAGCATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATATTCCCAGGTGTCAATATTCATTATACAATAGAGTCAAGCATT  1142

seq1  AGAGTAGTCACTTTTTTCTTCAATTGTAATATTCTCTGGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGTCACTTTTTTCTTCAATTGTAATATTCTCTGGAATTC  1186


seq1: chr12_44701825_44702886
seq2: B6Ng01-269D23.g_64_1121

seq1  GAATTCTCAGTAAAGATAGAATGACAGCCCTCTGGCTCTGGCTCCTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTAAAGATAGAATGACAGCCCTCTGGCTCTGGCTCCTGTAG  50

seq1  AAAGATACATTTGGTGACAATGATGAATAGCTCCACAGTCTGGCAAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACATTTGGTGACAATGATGAATAGCTCCACAGTCTGGCAAAGTC  100

seq1  AGGCTGGGGACTATGTGAAGTACAACTGGTCTGAATGACAGAGAGAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGGGACTATGTGAAGTACAACTGGTCTGAATGACAGAGAGAAAGC  150

seq1  AGACAGGAGCATTTCCTGATGCAGACTGACAGGAGCTTGGAGTGAGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAGCATTTCCTGATGCAGACTGACAGGAGCTTGGAGTGAGGGTA  200

seq1  TATTTGGAAAATTGTAGGATATCATACCTTTTGGGGAACTGCCCAGCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGAAAATTGTAGGATATCATACCTTTTGGGGAACTGCCCAGCTCA  250

seq1  AAGACATTAAAGTTTCACTCAAAACTTGACACATTACCATACAACAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTAAAGTTTCACTCAAAACTTGACACATTACCATACAACAGTAT  300

seq1  AATATTCGTAGAGATGCTGGGTTTTAATCTTAGATCATTCAAACTATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCGTAGAGATGCTGGGTTTTAATCTTAGATCATTCAAACTATATA  350

seq1  ATAAAGAGATTGAAATTATGATTTTTATTGAACTTCATATACTTTAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGATTGAAATTATGATTTTTATTGAACTTCATATACTTTAAATA  400

seq1  GAAATCCTTAACCTAGATGTAATAGTTCAAAAATAAAAGTAAAATGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCTTAACCTAGATGTAATAGTTCAAAAATAAAAGTAAAATGCTCA  450

seq1  TATATCTAGCACCCAGATCCCAAGGTACAGATTTATATCAAGTTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTAGCACCCAGATCCCAAGGTACAGATTTATATCAAGTTTTAAAA  500

seq1  ACTGACTGCTAATATAGGAGCTGCATTTCCTAATAAGACATAATTGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGCTAATATAGGAGCTGCATTTCCTAATAAGACATAATTGTCTA  550

seq1  ATAATATTTCATAACCCTTTCTTCCAATTGTGTTTATTCTAATAAAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTCATAACCCTTTCTTCCAATTGTGTTTATTCTAATAAAAGGG  600

seq1  TCTTGCTTTCTATTACATATTATCAATTCACATGTTATGGAAAACAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTCTATTACATATTATCAATTCACATGTTATGGAAAACAGTAA  650

seq1  ATAAAATATAACAAAAAATATAAGCAGTAAATATAATAGATGATGTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATAACAAAAAATATAAGCAGTAAATATAATAGATGATGTTATT  700

seq1  TATCATCATTAATCAAATCAGGGAATCAAAGCTGCTTAGGAAAGCAGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCATTAATCAAATCAGGGAATCAAAGCTGCTTAGGAAAGCAGGTA  750

seq1  TAAGATGTATAAAAATATCGGAAAGTTTGTAGAACCTTAATATCAAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGTATAAAAATATCGGAAAGTTTGTAGAACCTTAATATCAAGAGA  800

seq1  GTGACATCAGTGCATTTGGTAGAACATTAGATTTGTTCATTCCTGCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCAGTGCATTTGGTAGAACATTAGATTTGTTCATTCCTGCTGTT  850

seq1  TAAAAACCGTGTTAATAAGGATCTATACACAGTTTATAACACTATGATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCGTGTTAATAAGGATCTATACACAGTTTATAACACTATGATTA  900

seq1  TTTTTTAAATATATTTACTAATGTATAAGTGGGTAAGGAGGTATCTACCT  950
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  TTTTTTAAATATATTTACTAATGTATAAGTGGTAAAGGAGGTATCTACCT  950

seq1  ATATAATAGTGATATATCATAACTTACGCAGTCAA-TTTTACATTAAACG  999
      ||||||||||||||||||||||||||||||||||| ||||||||| ||  
seq2  ATATAATAGTGATATATCATAACTTACGCAGTCAATTTTTACATTTAAAC  1000

seq1  GCTACAG-AAAACAGCAAAGGTTAAGCTCAG-CCTGTAAAATCCGTTCCG  1047
      ||||||| ||||||||||||    ||||||| |||||||||| |||    
seq2  GCTACAGAAAAACAGCAAAG---TAGCTCAGCCCTGTAAAAT-CGT---C  1043

seq1  GTGACTTTTACTTTA  1062
      |||||||||||||||
seq2  GTGACTTTTACTTTA  1058


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