BAC Information

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BAC

Clone NameB6Ng01-269E04
Chromosome12 (Build37)
Map Location 39,150,105 - 39,327,624
singlet/doubletdoublet
Overlap geneDgkb
Upstream geneLOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269E04.bB6Ng01-269E04.g
ACCGA071907GA071908
length1,1611,137
definitionB6Ng01-269E04.b B6Ng01-269E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,326,449 - 39,327,624)(39,150,105 - 39,151,252)
sequence
gaattcttaatgactcatgttcaatgggattcaaccacagtgaagagcac
tccaacccccccaaaactagactcctgatcattagaaagtgtaacagcag
cacttaaaacaagaatatatggccaaactaacgtattataaactgaatgc
taaaagaatgtcatttaaaattttttacactgtagttgcagcaggaagca
gtcccaaataaaaacaacctttcagctatagaacctgcatcaccaagcta
tggcttagattcgaaaccatagggcatccatctttctgctttcaccctat
ttagacttgtttctcagaagcttattctctgtttttagctttaaatttct
attgccaagaacagatggacagggaatagaaacatattctttcagctgta
gccggcactcaaatgtgcttggcttcatagtttgggtgttagtgttcaca
tgtcttaggtatatgtcaaccagaaagtggcatcatggcaggtgctgaga
gcccagatgtgtgcaaggtaatagaaagtgcatcacacagaaggaacatg
gatttgggactgtgatttgtactgctcagctccaaaataggtaagacttt
atgcatttttttctaatgagctaagactgggaactattctacaaatgagg
cagtttctcacaacagagctgatctgtgagccctaacttttctatgaatc
acagggatttgtctacacccacaccatattgctactgtctaccaccctcc
tgctgattttcatctttaatttgtcttctccatggaaaaaataccctgca
aatcaattctactgttaataatcagcggagaagatatatctaacaaattc
agaggagttgggcttttatattttcatgcccttgtatgaaaagagttctc
taggaactgtagaatattgaggatcacaatcacgataaatacataccata
ttccttttacttaggtattaggaggaaagaaaaggcatagcaaaaatcaa
aacccacactttgcatttgagctgtaagttgctccatatatgatggattt
aggtgctatgtgaccacttgtctgctgtgatcatgagaatagatttgctg
atttggaacaaataatttcattctgtatattgtccgatttattctgctta
agtacctttta

gaattcagtgtttgcatctcctttaatatgcagccttgtcagaagcaacc
tgcatgcctggttaggcacatctctacttttttgtagaagtgcattggca
gtttatattttatttgattttgtatatttgaagtgctcatgttatttaaa
aaaagaagaaagaaagaatggaaggaaaggaaactagaaatatcccaaca
aaaaatattgttgaaacttaaattgcctagttcaaagttaaatattcatg
gaactaaacagtgcctacatttcataatgacaaaaacaatttgtttcaac
aaaatattgcacaacttacatttctctgatgatatgtaaaccacaaaatt
actcttagtgagaaaataccaggtaaatgggagtttgtttttcttcattt
tttacctgaacatctggtaactgaacatttcaaatattaattgcagattt
acaattaaattcattggaaaaagacttcacacattaattaaaattataat
tacatgcataagttttgcatatggactttgtaggacatttctcatcttac
ttggagttataaatcctgtctaaatgtgcaataaatttgattctatgtga
ctatttcacaacgagtgaatgtccaggtcccatattctcaagtccaatga
gatgtgatttctctcacaaatctgagtcggaattatttgaatcattttct
attgtgaaccgtaaaaataaaaggcgtacatgcccaaatgtgcttcttct
gcatttctacaacctgaggaccagtttgctttaaaaaaataaaatttaac
agcctttaatttgtcatgtggatctgattctatgtgttctttattgcctc
catatatttatcgaagtgaagcataaaatggttgtaataatggagaattt
aaagtagcttttgcacatgagcagtaatgctaactaatatggtgaataaa
gactgaatgtaaatttcttcagatttctgtttcttacgaagttttttttg
aaataagtgtttctctgtgctgaaacatcttcttatgaaagcatgataaa
cttaatagcagatgtagctaaggtattatcaggtgcattgacccttattc
cttgtatattatctcattcatctgcaatataatatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_39326449_39327624
seq2: B6Ng01-269E04.b_44_1204 (reverse)

seq1  TAAAAGGTACTATAAGCAGAAATAAATTCGACAATATACAGATGGAAATT  50
      ||||||||||| ||||||| |||||||  |||||||||||||  ||||||
seq2  TAAAAGGTACT-TAAGCAG-AATAAATCGGACAATATACAGAATGAAATT  48

seq1  ATTTG-TCCAAATCAGCCAAAATCTTAATCTCAATGATCACAGGCAGACA  99
      ||||| |||||||||||  ||||| || |||| ||||||||| |||||||
seq2  ATTTGTTCCAAATCAGC--AAATC-TATTCTC-ATGATCACA-GCAGACA  93

seq1  AGTGGGTCACATAGCACCAAAATTCCATCATATTATGGGAGCCAACTTTA  149
      ||| |||||||||||||| ||| ||||||||| ||| |||| |||| |||
seq2  AGT-GGTCACATAGCACCTAAA-TCCATCATA-TAT-GGAG-CAAC-TTA  137

seq1  CAGCTCAAATGCAAAGTTGTTGGGTTTTGATTTTTGCTATGCCTTTTCTT  199
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  CAGCTCAAATGCAAAGT--GTGGGTTTTGATTTTTGCTATGCCTTTTCTT  185

seq1  TCCTCCTAATACCTAAGTAAAAGGAATATGGTATGTATTTATCCTTGATT  249
      |||||||||||||||||||||||||||||||||||||||||| | |||||
seq2  TCCTCCTAATACCTAAGTAAAAGGAATATGGTATGTATTTAT-CGTGATT  234

seq1  GTGATCCTCAATATTCTACAGTTCCTAGAGAACTCTTTTCATACAAGGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCTCAATATTCTACAGTTCCTAGAGAACTCTTTTCATACAAGGGC  284

seq1  ATGAAAATATAAAAGCCCAACTCCTCTGAATTTGTTAGATATATCTTCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATATAAAAGCCCAACTCCTCTGAATTTGTTAGATATATCTTCTC  334

seq1  CGCTGATTATTAACAGTAGAATTGATTTGCAGGGTATTTTTTCCATGGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGATTATTAACAGTAGAATTGATTTGCAGGGTATTTTTTCCATGGAG  384

seq1  AAGACAAATTAAAGATGAAAATCAGCAGGAGGGTGGTAGACAGTAGCAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAATTAAAGATGAAAATCAGCAGGAGGGTGGTAGACAGTAGCAAT  434

seq1  ATGGTGTGGGTGTAGACAAATCCCTGTGATTCATAGAAAAGTTAGGGCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTGGGTGTAGACAAATCCCTGTGATTCATAGAAAAGTTAGGGCTC  484

seq1  ACAGATCAGCTCTGTTGTGAGAAACTGCCTCATTTGTAGAATAGTTCCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCAGCTCTGTTGTGAGAAACTGCCTCATTTGTAGAATAGTTCCCA  534

seq1  GTCTTAGCTCATTAGAAAAAAATGCATAAAGTCTTACCTATTTTGGAGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGCTCATTAGAAAAAAATGCATAAAGTCTTACCTATTTTGGAGCT  584

seq1  GAGCAGTACAAATCACAGTCCCAAATCCATGTTCCTTCTGTGTGATGCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTACAAATCACAGTCCCAAATCCATGTTCCTTCTGTGTGATGCAC  634

seq1  TTTCTATTACCTTGCACACATCTGGGCTCTCAGCACCTGCCATGATGCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTACCTTGCACACATCTGGGCTCTCAGCACCTGCCATGATGCCA  684

seq1  CTTTCTGGTTGACATATACCTAAGACATGTGAACACTAACACCCAAACTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGTTGACATATACCTAAGACATGTGAACACTAACACCCAAACTA  734

seq1  TGAAGCCAAGCACATTTGAGTGCCGGCTACAGCTGAAAGAATATGTTTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCAAGCACATTTGAGTGCCGGCTACAGCTGAAAGAATATGTTTCT  784

seq1  ATTCCCTGTCCATCTGTTCTTGGCAATAGAAATTTAAAGCTAAAAACAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTGTCCATCTGTTCTTGGCAATAGAAATTTAAAGCTAAAAACAGA  834

seq1  GAATAAGCTTCTGAGAAACAAGTCTAAATAGGGTGAAAGCAGAAAGATGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGCTTCTGAGAAACAAGTCTAAATAGGGTGAAAGCAGAAAGATGG  884

seq1  ATGCCCTATGGTTTCGAATCTAAGCCATAGCTTGGTGATGCAGGTTCTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTATGGTTTCGAATCTAAGCCATAGCTTGGTGATGCAGGTTCTAT  934

seq1  AGCTGAAAGGTTGTTTTTATTTGGGACTGCTTCCTGCTGCAACTACAGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAAGGTTGTTTTTATTTGGGACTGCTTCCTGCTGCAACTACAGTG  984

seq1  TAAAAAATTTTAAATGACATTCTTTTAGCATTCAGTTTATAATACGTTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTTTAAATGACATTCTTTTAGCATTCAGTTTATAATACGTTAG  1034

seq1  TTTGGCCATATATTCTTGTTTTAAGTGCTGCTGTTACACTTTCTAATGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCATATATTCTTGTTTTAAGTGCTGCTGTTACACTTTCTAATGAT  1084

seq1  CAGGAGTCTAGTTTTGGGGGGGTTGGAGTGCTCTTCACTGTGGTTGAATC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTCTAGTTTTGGGGGGGTTGGAGTGCTCTTCACTGTGGTTGAATC  1134

seq1  CCATTGAACATGAGTCATTAAGAATTC  1176
      |||||||||||||||||||||||||||
seq2  CCATTGAACATGAGTCATTAAGAATTC  1161


seq1: chr12_39150105_39151252
seq2: B6Ng01-269E04.g_66_1202

seq1  GAATTCAGTGTTTGCATCTCCTTTAATATGCAGCCTTGTCAGAAGCAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTTGCATCTCCTTTAATATGCAGCCTTGTCAGAAGCAACC  50

seq1  TGCATGCCTGGTTAGGCACATCTCTACTTTTTTGTAGAAGTGCATTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCCTGGTTAGGCACATCTCTACTTTTTTGTAGAAGTGCATTGGCA  100

seq1  GTTTATATTTTATTTGATTTTGTATATTTGAAGTGCTCATGTTATTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATTTTATTTGATTTTGTATATTTGAAGTGCTCATGTTATTTAAA  150

seq1  AAAAGAAGAAAGAAAGAATGGAAGGAAAGGAAACTAGAAATATCCCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAAAGAAAGAATGGAAGGAAAGGAAACTAGAAATATCCCAACA  200

seq1  AAAAATATTGTTGAAACTTAAATTGCCTAGTTCAAAGTTAAATATTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTGTTGAAACTTAAATTGCCTAGTTCAAAGTTAAATATTCATG  250

seq1  GAACTAAACAGTGCCTACATTTCATAATGACAAAAACAATTTGTTTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAACAGTGCCTACATTTCATAATGACAAAAACAATTTGTTTCAAC  300

seq1  AAAATATTGCACAACTTACATTTCTCTGATGATATGTAAACCACAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTGCACAACTTACATTTCTCTGATGATATGTAAACCACAAAATT  350

seq1  ACTCTTAGTGAGAAAATACCAGGTAAATGGGAGTTTGTTTTTCTTCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAGTGAGAAAATACCAGGTAAATGGGAGTTTGTTTTTCTTCATTT  400

seq1  TTTACCTGAACATCTGGTAACTGAACATTTCAAATATTAATTGCAGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGAACATCTGGTAACTGAACATTTCAAATATTAATTGCAGATTT  450

seq1  ACAATTAAATTCATTGGAAAAAGACTTCACACATTAATTAAAATTATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAAATTCATTGGAAAAAGACTTCACACATTAATTAAAATTATAAT  500

seq1  TACATGCATAAGTTTTGCATATGGACTTTGTAGGACATTTCTCATCTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCATAAGTTTTGCATATGGACTTTGTAGGACATTTCTCATCTTAC  550

seq1  TTGGAGTTATAAATCCTGTCTAAATGTGCAATAAATTTGATTCTATGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTATAAATCCTGTCTAAATGTGCAATAAATTTGATTCTATGTGA  600

seq1  CTATTTCACAACGAGTGAATGTCCAGGTCCCATATTCTCAAGTCCAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCACAACGAGTGAATGTCCAGGTCCCATATTCTCAAGTCCAATGA  650

seq1  GATGTGATTTCTCTCACAAATCTGAGTCGGAATTATTTGAATCATTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGATTTCTCTCACAAATCTGAGTCGGAATTATTTGAATCATTTTCT  700

seq1  ATTGTGAACCGTAAAAATAAAAGGCGTACATGCCCAAATGTGCTTCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAACCGTAAAAATAAAAGGCGTACATGCCCAAATGTGCTTCTTCT  750

seq1  GCATTTCTACAACCTGAGGACCAGTTTGCTTTAAAAAAATAAAATTTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTACAACCTGAGGACCAGTTTGCTTTAAAAAAATAAAATTTAAC  800

seq1  AGCCTTTAATTTGTCATGTGGATCTGATTCTATGTGTTCTTTATTGCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTAATTTGTCATGTGGATCTGATTCTATGTGTTCTTTATTGCCTC  850

seq1  CATATATTTATCGAAGTGAAGCATAAAATGGTTGTAATAATGGAGAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTTATCGAAGTGAAGCATAAAATGGTTGTAATAATGGAGAATTT  900

seq1  AAAGTAGCTTTTGCACATGAGCAGTAATGCTAACTAATATGGTGAATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGCTTTTGCACATGAGCAGTAATGCTAACTAATATGGTGAATAAA  950

seq1  GACTGAATGTAAA-TTCTCAAGATTTCTGTTTCTTACGAAG-TTTTTTTG  998
      ||||||||||||| ||||  ||||||||||||||||||||| ||||||||
seq2  GACTGAATGTAAATTTCTTCAGATTTCTGTTTCTTACGAAGTTTTTTTTG  1000

seq1  AAATAAGTGTTTCTCTGTTGCTTGAAACAATCTTCTTATGAAAGCATGAT  1048
      ||||||||||||||||| ||| |||||| |||||||||||||||||||||
seq2  AAATAAGTGTTTCTCTG-TGC-TGAAAC-ATCTTCTTATGAAAGCATGAT  1047

seq1  AAACTTTAATAGGCAGAATGGAAGCTAAAGGGAATTATCAGTTGCATGGA  1098
      |||| |||||| |||||   | ||||||  || |||||||| ||||| ||
seq2  AAAC-TTAATA-GCAGA--TGTAGCTAA--GGTATTATCAGGTGCATTGA  1091

seq1  ACCCTAATCCTTGTATATTTATCTCATTTTTCATCTGCAATATAATATTA  1148
       || || |||||||||| ||||||||   |||||||||||||||||||||
seq2  CCCTTATTCCTTGTATA-TTATCTCA---TTCATCTGCAATATAATATTA  1137


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