BAC Information

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BAC

Clone NameB6Ng01-270A07
Chromosome12 (Build37)
Map Location 9,767,070 - 9,768,209
singlet/doubletsinglet
Overlap genenone
Upstream geneF730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238, Osr1
Downstream geneLOC382567, Nt5c1b, Rdh14, LOC238074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270A07.bB6Ng01-270A07.g
ACCGA072469GA072470
length1,2271,127
definitionB6Ng01-270A07.b B6Ng01-270A07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggccaatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaacagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg
tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtcc
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccattaaaattccaactcaattcttc
aacgaactagaaggagcaatttgcaaattcatctggaataacaaaaaacc
gaggatagcaaaaactcttctcaaggataaagaacctctggtggaatcac
catgcctgacctaaagctttactacagagcaattgtgataaaaactgcat
ggtactggtatagagacagacaagtggaccaatggaatagaattgaagac
ccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagc
caaaaccatccagtggaagaagacagcattttcaacaattggtgctggca
caactggttgttatcatgtagagaatgcgaatcgatccatactatctcct
gtactaaggtcaaatctaagtggatcaaggaacttcacataaaccagaag
aaaactgaaacttataagagggagaaaggtgggggaaaagccttgaagat
tatggcacagggaaattctgaacaagaacagcatgcttgtgctgtagaaa
tcgagattgccaatgggacctaatggaattccaaaggttcctcgcaaggc
aaagaaaacacctggctgctctatagc
gaattcttcttaacactgaagaacgtgatgacatgttaggtctcacactg
aattcatgaaaacagaactttttacaaagactgaaaacattacttgaagt
ccttttccaagaacaaatgctagcatttcacaacaggtgagtcttagaaa
cctaagaggttcagtgggagaggctaagaagagggatgtgggttcacacc
agaaatatacacaacccagtttattcttccacactgtatctgcctgttgt
gaattaagtttgaaatatcttctcctgacatgtggtatttcaccttgtgc
tccttctctgtgcttgcccatctgttttgaggcagcttggcaccggcatc
tgattcctcttgaaaatgttctggttgaactggtcaacggtgcacgttaa
tctcagcaatgctgcaggtggaagcccacatcaagtgtcccgcttactgc
cttgcaacttactgcctagcaagtgttcccaccaagagtgctgtaatcac
gtggtttacttgcctccagagacctccttgattcctgagaacccagaccc
cagtcctgttgctggggtaagatcccttggctgctgtgcgtgtttaggct
cctgttgagcatttgttttccttggcatttcaaagcactatgctaatttt
tattacacccttgacagaccaaatcctagtgccagcaagccacaatgaag
caaacacttacaatttagagaagaagttcagattctattttccatggagt
ctagaagtttcatcacctggtaaaacactccagactggacagtggcctcc
gctgtacttatgtgacctcagaactgcctctgctgtttctctccttcagt
cactttctattctttctctctgtcaccctctctccatatacacacactca
gaagtgatccacacacaggaataaatacacagaacacaccttacaatttt
atacagctacacgatgcattcaaattactacacgcatgcatacaattaca
cacacacacacacacacaccacaaacattcacatgcacagtgccctataa
actctagatgcatccatgctgactttcagatcacaatggagcactactag
gcactaagcagcataacttaagttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_9767070_9768209
seq2: B6Ng01-270A07.g_65_1191 (reverse)

seq1  CATAACTTTAAAGGTAATTGCTGCTTTTAGTG-CTAGTAGTGCT-CATGG  48
      ||||||||  ||| ||  ||||||  |||||| ||||||||||| ||| |
seq2  CATAACTT--AAGTTA--TGCTGC--TTAGTGCCTAGTAGTGCTCCATTG  44

seq1  TTGAATCCTGAAAGTCAGCATGGATGCATTCTAGAGTTTAATTAGGGCAC  98
       |||   ||||||||||||||||||||| |||||||||||  ||||||||
seq2  -TGA--TCTGAAAGTCAGCATGGATGCA-TCTAGAGTTTA--TAGGGCAC  88

seq1  TGTGCATGTGAATGTTTGTGGTGTGTGTGTGTGTGTGTGTGTAATTTGTA  148
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGCATGTGAATGTTTGTGGTGTGTGTGTGTGTGTGTGTGTAA-TTGTA  137

seq1  TGCATGCGTGTAGTAATTTGAATGCATCGTGTAGCTGTATAAAATTGTAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCGTGTAGTAATTTGAATGCATCGTGTAGCTGTATAAAATTGTAA  187

seq1  GGTTGTGTTTCTGTGTATTTATTCCTGTGTGTGGATCACTTCTGAGTGTG  248
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GG-TGTG-TTCTGTGTATTTATTCCTGTGTGTGGATCACTTCTGAGTGTG  235

seq1  TGTATATGGAGAGAGGGTGACAGAGAGAAAGAATAGAAAGTGACTGAAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGGAGAGAGGGTGACAGAGAGAAAGAATAGAAAGTGACTGAAGG  285

seq1  AGAGAAACAGCAGAGGCAGTTCTGAGGTCACATAAGTACAGCGGAGGCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACAGCAGAGGCAGTTCTGAGGTCACATAAGTACAGCGGAGGCCA  335

seq1  CTGTCCAGTCTGGAGTGTTTTACCAGGTGATGAAACTTCTAGACTCCATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGTCTGGAGTGTTTTACCAGGTGATGAAACTTCTAGACTCCATG  385

seq1  GAAAATAGAATCTGAACTTCTTCTCTAAATTGTAAGTGTTTGCTTCATTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGAATCTGAACTTCTTCTCTAAATTGTAAGTGTTTGCTTCATTG  435

seq1  TGGCTTGCTGGCACTAGGATTTGGTCTGTCAAGGGTGTAATAAAAATTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCTGGCACTAGGATTTGGTCTGTCAAGGGTGTAATAAAAATTAG  485

seq1  CATAGTGCTTTGAAATGCCAAGGAAAACAAATGCTCAACAGGAGCCTAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGCTTTGAAATGCCAAGGAAAACAAATGCTCAACAGGAGCCTAAA  535

seq1  CACGCACAGCAGCCAAGGGATCTTACCCCAGCAACAGGACTGGGGTCTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCACAGCAGCCAAGGGATCTTACCCCAGCAACAGGACTGGGGTCTGG  585

seq1  GTTCTCAGGAATCAAGGAGGTCTCTGGAGGCAAGTAAACCACGTGATTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGGAATCAAGGAGGTCTCTGGAGGCAAGTAAACCACGTGATTAC  635

seq1  AGCACTCTTGGTGGGAACACTTGCTAGGCAGTAAGTTGCAAGGCAGTAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCTTGGTGGGAACACTTGCTAGGCAGTAAGTTGCAAGGCAGTAAG  685

seq1  CGGGACACTTGATGTGGGCTTCCACCTGCAGCATTGCTGAGATTAACGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGACACTTGATGTGGGCTTCCACCTGCAGCATTGCTGAGATTAACGTG  735

seq1  CACCGTTGACCAGTTCAACCAGAACATTTTCAAGAGGAATCAGATGCCGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTTGACCAGTTCAACCAGAACATTTTCAAGAGGAATCAGATGCCGG  785

seq1  TGCCAAGCTGCCTCAAAACAGATGGGCAAGCACAGAGAAGGAGCACAAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGCTGCCTCAAAACAGATGGGCAAGCACAGAGAAGGAGCACAAGG  835

seq1  TGAAATACCACATGTCAGGAGAAGATATTTCAAACTTAATTCACAACAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACCACATGTCAGGAGAAGATATTTCAAACTTAATTCACAACAGG  885

seq1  CAGATACAGTGTGGAAGAATAAACTGGGTTGTGTATATTTCTGGTGTGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACAGTGTGGAAGAATAAACTGGGTTGTGTATATTTCTGGTGTGAA  935

seq1  CCCACATCCCTCTTCTTAGCCTCTCCCACTGAACCTCTTAGGTTTCTAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATCCCTCTTCTTAGCCTCTCCCACTGAACCTCTTAGGTTTCTAAG  985

seq1  ACTCACCTGTTGTGAAATGCTAGCATTTGTTCTTGGAAAAGGACTTCAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCTGTTGTGAAATGCTAGCATTTGTTCTTGGAAAAGGACTTCAAG  1035

seq1  TAATGTTTTCAGTCTTTGTAAAAAGTTCTGTTTTCATGAATTCAGTGTGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTTCAGTCTTTGTAAAAAGTTCTGTTTTCATGAATTCAGTGTGA  1085

seq1  GACCTAACATGTCATCACGTTCTTCAGTGTTAAGAAGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAACATGTCATCACGTTCTTCAGTGTTAAGAAGAATTC  1127