BAC Information

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BAC

Clone NameB6Ng01-270E02
Chromosome12 (Build37)
Map Location 58,111,169 - 58,263,061
singlet/doubletdoublet
Overlap geneSlc25a21
Upstream geneLOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9
Downstream geneAU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270E02.bB6Ng01-270E02.g
ACCGA072642GA072643
length4101,139
definitionB6Ng01-270E02.b B6Ng01-270E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,262,643 - 58,263,061)(58,111,169 - 58,112,313)
sequence
ttctaatttacaaatgtcagggagcgggagcaaggaaaaaaccccacttc
tctctcggtgcctttctttgtccatctatttccacataattaggaatgta
cctcataacagcactttatagaaagcagacagactgtgatgtgggatgtc
ttcttttcataatatttttattgattatttggaaatttcacatcatgaac
cccagcatactcacatcccagtcctcctaggccactccccctttgcccct
gcaaaagaaggagagctaagaggaagagggcagaggaggaggagaagagg
gggagaaggaagaagaagagaagaggaggaggatgaagaagaggacgaac
gtaacagccttcccctggagtattgtaaaagggctgcccctgaaaaagac
aaactccttc
gaattctgctggtccatgccttcctagttgaaatgtgttagcgcctttgg
gcaaggttacaaaggtgattgtctctgctagccttgaacaaatagtcaaa
taagtttttataaaactgttgagagttagtccattaatttaatggacttc
ttggatttcactcaatttccttagccctgaaaattccaggaggaaaaaca
atatgatgcatcaacaatttttttataatatgaagaagaaattcttataa
ctgtgtttcgggatcatcaccatacatcacagtgatcatagactgggtag
gtttcatatcttttctccctgagatatgatagctccttaccacaggatgt
ccacgataggtgtttgtttaagaaacaagttgaaccaggagtggtggtgg
tggtgaacacctttaatcccagcactttgggaaccaggggtaggcaggtc
ttggagactttcaggccagtcagggcaacatagtaagatccaatcaaaac
aaaaacaaacaaacaaacaactaaaaataagaaaaggacatttggctacg
gaatcgctaatcttgaatggatagatgagccacaaatcataatttacttg
agtatgcaccaaagtgaagttacctaatatatatgtatgcctttagagca
gcttcaaaggaaaggaaaccttcaattaattttatattttaattactagt
ataataaaaccaaataattatggactaattatgtgccaataacaaaaaga
aattaagtcaataattaccaataataactgaagaatagcattactaatga
gtatgttagtatcacagggtgagtcaaaggacaattaaaatgaaaagcca
gtatagggcaaaagaaaaacaaaaacaaaaacaaaccagaaggactcagc
actaagtcttagatttaatctatgcctactacggaggctgagccatttga
agtcagtgggtttcaagttatcactattttcagtttcatgtaactcagcc
caatagttacatttagaatagctttcctgctgacttaaagaaaaagtgat
aaattgccttttagaatattaactaatatttattctttggagaatttttc
cagattttttttgattgagatagctcattaaataagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_58262643_58263061
seq2: B6Ng01-270E02.b_44_459 (reverse)

seq1  GAAGGAGTTTGTTTTCTTTAAGGGGCAGCCTATTTGACAATACTCCAGTG  50
      |||||||||||| || ||| ||||||||||  ||| |||||||||||| |
seq2  GAAGGAGTTTGTCTT-TTTCAGGGGCAGCC-CTTTTACAATACTCCAGGG  48

seq1  AATATGTTCTTCCCTTCCTCCTCTTCTTCATCCTCCTCCTCTTCTCTTCT  100
       | | | | || | ||| ||||||||||||||||||||||||||||||||
seq2  GA-AGGCTGTTACGTTCGTCCTCTTCTTCATCCTCCTCCTCTTCTCTTCT  97

seq1  TCTTCCTTCTCCCCCTCTTCTCCTCCTCCTCTGCCCTCTTCCTCTTAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCTCCCCCTCTTCTCCTCCTCCTCTGCCCTCTTCCTCTTAGCT  147

seq1  CTCCTTCTTTTGCAGGGGCAAAGGGGGAGTGGCCTAGGAGGACTGGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTTTTGCAGGGGCAAAGGGGGAGTGGCCTAGGAGGACTGGGATG  197

seq1  TGAGTATGCTGGGGTTCATGATGTGAAATTTCCAAATAATCAATAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATGCTGGGGTTCATGATGTGAAATTTCCAAATAATCAATAAAAAT  247

seq1  ATTATGAAAAGAAGACATCCCACATCACAGTCTGTCTGCTTTCTATAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAAAAGAAGACATCCCACATCACAGTCTGTCTGCTTTCTATAAAG  297

seq1  TGCTGTTATGAGGTACATTCCTAATTATGTGGAAATAGATGGACAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTATGAGGTACATTCCTAATTATGTGGAAATAGATGGACAAAGAA  347

seq1  AGGCACCGAGAGAGAAGTGGGGTTTTTTCCTTGCTCCCGCTCCCTGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCGAGAGAGAAGTGGGGTTTTTTCCTTGCTCCCGCTCCCTGACAT  397

seq1  TTGTAAATTAGAAGAATTC  419
      |||||||||||||||||||
seq2  TTGTAAATTAGAAGAATTC  416

seq1: chr12_58111169_58112313
seq2: B6Ng01-270E02.g_62_1200

seq1  GAATTCTGCTGGTCCATGCCTTCCTAGTTGAAATGTGTTAGCGCCTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGGTCCATGCCTTCCTAGTTGAAATGTGTTAGCGCCTTTGG  50

seq1  GCAAGGTTACAAAGGTGATTGTCTCTGCTAGCCTTGAACAAATAGTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTTACAAAGGTGATTGTCTCTGCTAGCCTTGAACAAATAGTCAAA  100

seq1  TAAGTTTTTATAAAACTGTTGAGAGTTAGTCCATTAATTTAATGGACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTTATAAAACTGTTGAGAGTTAGTCCATTAATTTAATGGACTTC  150

seq1  TTGGATTTCACTCAATTTCCTTAGCCCTGAAAATTCCAGGAGGAAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTCACTCAATTTCCTTAGCCCTGAAAATTCCAGGAGGAAAAACA  200

seq1  ATATGATGCATCAACAATTTTTTTATAATATGAAGAAGAAATTCTTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGCATCAACAATTTTTTTATAATATGAAGAAGAAATTCTTATAA  250

seq1  CTGTGTTTCGGGATCATCACCATACATCACAGTGATCATAGACTGGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTCGGGATCATCACCATACATCACAGTGATCATAGACTGGGTAG  300

seq1  GTTTCATATCTTTTCTCCCTGAGATATGATAGCTCCTTACCACAGGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATATCTTTTCTCCCTGAGATATGATAGCTCCTTACCACAGGATGT  350

seq1  CCACGATAGGTGTTTGTTTAAGAAACAAGTTGAACCAGGAGTGGTGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGATAGGTGTTTGTTTAAGAAACAAGTTGAACCAGGAGTGGTGGTGG  400

seq1  TGGTGAACACCTTTAATCCCAGCACTTTGGGAACCAGGGGTAGGCAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAACACCTTTAATCCCAGCACTTTGGGAACCAGGGGTAGGCAGGTC  450

seq1  TTGGAGACTTTCAGGCCAGTCAGGGCAACATAGTAAGATCCAATCAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGACTTTCAGGCCAGTCAGGGCAACATAGTAAGATCCAATCAAAAC  500

seq1  AAAAACAAACAAACAAACAACTAAAAATAAGAAAAGGACATTTGGCTACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACAAACAAACAACTAAAAATAAGAAAAGGACATTTGGCTACG  550

seq1  GAATCGCTAATCTTGAATGGATAGATGAGCCACAAATCATAATTTACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGCTAATCTTGAATGGATAGATGAGCCACAAATCATAATTTACTTG  600

seq1  AGTATGCACCAAAGTGAAGTTACCTAATATATATGTATGCCTTTAGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCACCAAAGTGAAGTTACCTAATATATATGTATGCCTTTAGAGCA  650

seq1  GCTTCAAAGGAAAGGAAACCTTCAATTAATTTTATATTTTAATTACTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAAGGAAAGGAAACCTTCAATTAATTTTATATTTTAATTACTAGT  700

seq1  ATAATAAAACCAAATAATTATGGACTAATTATGTGCCAATAACAAAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAACCAAATAATTATGGACTAATTATGTGCCAATAACAAAAAGA  750

seq1  AATTAAGTCAATAATTACCAATAATAACTGAAGAATAGCATTACTAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGTCAATAATTACCAATAATAACTGAAGAATAGCATTACTAATGA  800

seq1  GTATGTTAGTATCACAGGGTGAGTCAAAGGACAATTAAAATGAAAAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTAGTATCACAGGGTGAGTCAAAGGACAATTAAAATGAAAAGCCA  850

seq1  GTATAGGGCAAAAGAAAAACAAAAACAAAAACAAACCAGAAGGACTCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGGCAAAAGAAAAACAAAAACAAAAACAAACCAGAAGGACTCAGC  900

seq1  ACTAAGTCTTAGATTTAATCTATGCCTACTACGGAGGCTGAGCCATTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTCTTAGATTTAATCTATGCCTACTACGGAGGCTGAGCCATTTGA  950

seq1  AGTCAGTGGGTTTCAAGTTATCAACTATTTTCAGTTTCATGTAACTCAGC  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTCAGTGGGTTTCAAGTTATC-ACTATTTTCAGTTTCATGTAACTCAGC  999

seq1  CCAATAGTTACATTTAG-ATAGC-TTCCTGCTGACTTTAAAGAAAAGGTG  1048
      ||||||||||||||||| ||||| ||||||||||| |||||||||| |||
seq2  CCAATAGTTACATTTAGAATAGCTTTCCTGCTGAC-TTAAAGAAAAAGTG  1048

seq1  ATAAATTGCTTTTTAGGAATATT-ACTAATATTTAATTCTTTGAAGATTT  1097
      ||||||||| ||||| ||||||| |||||||||| |||||||| |||  |
seq2  ATAAATTGCCTTTTA-GAATATTAACTAATATTT-ATTCTTTGGAGA-AT  1095

seq1  TTTTCAAGATTTTTTTTTTAATTGAGGATAGCTCAATAAATAAAGCAA  1145
      ||||| |||  |||||||| ||||| ||||||||| ||||| ||||||
seq2  TTTTCCAGA--TTTTTTTTGATTGA-GATAGCTCATTAAAT-AAGCAA  1139