BAC Information

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BAC

Clone NameB6Ng01-270J20
Chromosome12 (Build37)
Map Location 17,362,804 - 17,519,339
singlet/doubletdoublet
Overlap geneNol10, LOC672501
Upstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2
Downstream geneOdc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341, EG245297, LOC100042573, LOC668539, LOC100043324, LOC636282, EG632781, LOC668541, LOC673160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270J20.bB6Ng01-270J20.g
ACCGA072909GA072910
length1,1121,160
definitionB6Ng01-270J20.b B6Ng01-270J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,362,804 - 17,363,912)(17,518,024 - 17,519,339)
sequence
gaattctgtctaatacagacagcaaggtaaaatggcaagggtcagttatt
atcagttaaccagtgttttaggaacaatgggagagaagtaaatgggatac
agcgctgtgtagaataaccagcataccttcctagtctcacccttgctgct
agagaacatagaaactttgtatgctattaataacacatcttttacaatgt
ttttgtgtagaggtaaacttggtataggcgaagagttactgttgccttct
ttctttctttctttttttttttttttgtttgtttgtttgtttgagacagg
atttctctttgcagtcatggcaggttcagaactcattatctagaccagac
tggccttagactcgcagaggtctttctttctctcccaagtgctaggagta
aagtcctgcaccaccacaggaacacccagcctggggtcccattttaaagg
ctgctgtttagattatatttcaaaatcttaaaactactaagaacatctca
gcaaaattatggcaaaaatgtttaggatcatcctaaatttactttagttc
tgttaaaaaaaaatctagatgtaagtaataactttccatttagtattagt
ggggatgttcttcttgttgcatggagaggtaggacaaacacagcaattat
atataattattcaccagttaaaccagttaagagggctggggagatgtctc
ggtggttaagagcactgattgctcttccagtggtcctgagttcaattccc
cagtaaccacatgggtgcgcaaaaccatctgtctgatgccctcttctggt
gtatctgaagagagcaatggtgaatacatttaaaacaaaacaattagaat
ccttcacctgaagtttgtggttttgtttaacactggttgataattgtggt
tttttttttttcctatttttcagttgtcaccttttgagatttatcagatg
actattcaacgttatgtttttatagccatattttacctttttattttatt
tatatgccacgtgttgtgtctttgacaagtggacgccgtgcatggtcaga
tgccttggtagctaaggggccatcaattcctcagggatgttgactgctga
tctgatctccag
gaattcaggaagagcagccagcactcatgtgctgtggagtcatttgctgt
agcacaaaataacatctggattaaaacattatttagatttgttattttat
atgtatagtcagaagacagtgtcaggtcccctggactgtagctatggatg
gctgtgatctgctctgtggatgctggatgctgaacctgcatcttctggaa
gagcagaaagtgctcttaactgctgagccaatttctctagcctccaatga
ttatatttaaaaaacaaaaaccaaaaaaaaaaaaacttacaagactaatg
tcatgggaagagaatggagaaataagtaggaaaaccaacaaacaataaaa
aaaagtccagcgcgtacagcgaaatgtttcatgaacctagtctttaaaaa
aaaagtatcctgtccggcatggtgggatgtacttttaatcccagcacttg
ggaggcagaggcaggtggatctctaaatttgaggctagccttgtctttat
agtgagtcccaggatagcctgggatacatggagaagccctgtctcagaaa
actaaaaaggagtgtccattcattttttttaaagatttatttgtttttat
tttatgttcattggtgttttgcctgcatgtatgattgtaaaggtatcaga
tcttctggaattggtagtacagccagctgtgaacagtcatgtgggcacta
ggaattgaagcccaggtcctctggaagagcagcagccagtgctcttaact
gctgagccaactctccagtcccaagacccatacattttctaaaacaggag
attcatagaggtaaccgagatatctgaatgttagttacttctcctgctgt
tgtgtgggacacctgacaagaaaaagggaaaagagcttgtgctggtttca
cagtttcagggaatacagcccatcatggttgagaggtcacagagccaagg
gttccctctccaccctcagtcaggaacagaagaagagttgcctgtgtctg
cccatttccttttattcaggacagggacttgagcccatagcatagagctg
ccccacatcaggatgccttcttttctgttctcaatgtgccttaactacac
ctccttgcaaactgcgaacctttgttatcaggttcactctagatcctgac
caaaggtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_17362804_17363912
seq2: B6Ng01-270J20.b_46_1157

seq1  GAATTCTGTCTAATACAGACAGCAAGGTAAAATGGCAAGGGTCAGTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTAATACAGACAGCAAGGTAAAATGGCAAGGGTCAGTTATT  50

seq1  ATCAGTTAACCAGTGTTTTAGGAACAATGGGAGAGAAGTAAATGGGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTAACCAGTGTTTTAGGAACAATGGGAGAGAAGTAAATGGGATAC  100

seq1  AGCGCTGTGTAGAATAACCAGCATACCTTCCTAGTCTCACCCTTGCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTGTGTAGAATAACCAGCATACCTTCCTAGTCTCACCCTTGCTGCT  150

seq1  AGAGAACATAGAAACTTTGTATGCTATTAATAACACATCTTTTACAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACATAGAAACTTTGTATGCTATTAATAACACATCTTTTACAATGT  200

seq1  TTTTGTGTAGAGGTAAACTTGGTATAGGCGAAGAGTTACTGTTGCCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTAGAGGTAAACTTGGTATAGGCGAAGAGTTACTGTTGCCTTCT  250

seq1  TTCTTTCTTTCTTTTTTTTTTTTTTTGTTTGTTTGTTTGTTTGAGACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTTTTTTTTTTTTTGTTTGTTTGTTTGTTTGAGACAGG  300

seq1  ATTTCTCTTTGCAGTCATGGCAGGTTCAGAACTCATTATCTAGACCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTTGCAGTCATGGCAGGTTCAGAACTCATTATCTAGACCAGAC  350

seq1  TGGCCTTAGACTCGCAGAGGTCTTTCTTTCTCTCCCAAGTGCTAGGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTAGACTCGCAGAGGTCTTTCTTTCTCTCCCAAGTGCTAGGAGTA  400

seq1  AAGTCCTGCACCACCACAGGAACACCCAGCCTGGGGTCCCATTTTAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGCACCACCACAGGAACACCCAGCCTGGGGTCCCATTTTAAAGG  450

seq1  CTGCTGTTTAGATTATATTTCAAAATCTTAAAACTACTAAGAACATCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTTTAGATTATATTTCAAAATCTTAAAACTACTAAGAACATCTCA  500

seq1  GCAAAATTATGGCAAAAATGTTTAGGATCATCCTAAATTTACTTTAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTATGGCAAAAATGTTTAGGATCATCCTAAATTTACTTTAGTTC  550

seq1  TGTTAAAAAAAAATCTAGATGTAAGTAATAACTTTCCATTTAGTATTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAAAAAAATCTAGATGTAAGTAATAACTTTCCATTTAGTATTAGT  600

seq1  GGGGATGTTCTTCTTGTTGCATGGAGAGGTAGGACAAACACAGCAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGTTCTTCTTGTTGCATGGAGAGGTAGGACAAACACAGCAATTAT  650

seq1  ATATAATTATTCACCAGTTAAACCAGTTAAGAGGGCTGGGGAGATGTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTATTCACCAGTTAAACCAGTTAAGAGGGCTGGGGAGATGTCTC  700

seq1  GGTGGTTAAGAGCACTGATTGCTCTTCCAGTGGTCCTGAGTTCAATT-CC  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGTGGTTAAGAGCACTGATTGCTCTTCCAGTGGTCCTGAGTTCAATTCCC  750

seq1  CAGTAACCACATGGGTGCGCAAAACCATCTGTCTGATGCCCTCTTCTGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACCACATGGGTGCGCAAAACCATCTGTCTGATGCCCTCTTCTGGT  800

seq1  GTATCTGAAGAGAGCAATGGTGAATACATTTAAAACAAAAACAATTAGAA  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTATCTGAAGAGAGCAATGGTGAATACATTTAAAAC-AAAACAATTAGAA  849

seq1  TCC-TCACCTGAAGTTTGTGGTTTTGTTTAAACACTGGTTGATAATTGTG  898
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCTTCACCTGAAGTTTGTGGTTTTGTTT-AACACTGGTTGATAATTGTG  898

seq1  GTTTTTTTTTTTTCCTATTTTTCAGTTGTCACC-TTTGAGATTTTATCAG  947
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  GTTTTTTTTTTTTCCTATTTTTCAGTTGTCACCTTTTGAGA-TTTATCAG  947

seq1  ATGACTATTCAAAGGTATG-TTTTATAG-CATA-TTTACTTTTTATTTTT  994
      |||||||||||| | |||| |||||||| |||| ||||| ||||  ||||
seq2  ATGACTATTCAACGTTATGTTTTTATAGCCATATTTTACCTTTTTATTTT  997

seq1  ATTTATATG-CACGTG-TGTGTCTTTGAC-AGTGAACGCCGTGCATGTGC  1041
      ||||||||| |||||| |||||||||||| |||| ||||||||||||  |
seq2  ATTTATATGCCACGTGTTGTGTCTTTGACAAGTGGACGCCGTGCATGGTC  1047

seq1  AGTTGCCCTTGGAAGCCAGAGGGGGCATCAGATCCTCAGGGGATTGTGAG  1091
      || || |||||| ||| | ||||| |||||  |||||| |||||  ||| 
seq2  AGATG-CCTTGGTAGCTA-AGGGGCCATCAATTCCTCA-GGGATGTTGA-  1093

seq1  CTGCTGATCTGATC-CCAG  1109
      |||||||||||||| ||||
seq2  CTGCTGATCTGATCTCCAG  1112

seq1: chr12_17518024_17519339
seq2: B6Ng01-270J20.g_65_1224 (reverse)

seq1  GTCACCTTTGAAATTTTAAAGTGTGAGTGTGGTTTTCCTCCTGACGACCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAGATCGTACCACAAGTCTGTTGCAGGAATTTTAAAAAGCAACAAAGCAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGAAAACTACGAGAAACAGTATAAAAAATAAGAACCTGTTATGGTGGTTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATATCGACTGTCAC--TTTGTCAGGATCTAGAGTGACCTCGATAACAAAG  198
               |||||  || ||||||||||||||||| |  ||||||||||
seq2  ---------GTCACCTTTGGTCAGGATCTAGAGTGAACCTGATAACAAAG  41

seq1  GTCTGGCAGGTTTGCAAGGGAGTGTTAAGGTTAAGCACATTGAG-ACAG-  246
      || | ||| ||||||||||  ||||  || | | |||||||||| |||| 
seq2  GT-TCGCA-GTTTGCAAGGAGGTGT--AGTTAAGGCACATTGAGAACAGA  87

seq1  AAAGAAGCCATTCTGAATGT-GGGCAGCTCTATGCTATGGGCTCAGGTCC  295
      ||||||| ||| ||| |||| |||||||||||||||||||||||| ||||
seq2  AAAGAAGGCATCCTG-ATGTGGGGCAGCTCTATGCTATGGGCTCAAGTCC  136

seq1  CTGT-CTGAATAAAAGGGAAATGGGCAGACCACAGGCAACTCT--CTCTG  342
      |||| |||||||||| ||||||||||||| |||||||||||||   ||||
seq2  CTGTCCTGAATAAAA-GGAAATGGGCAGA-CACAGGCAACTCTTCTTCTG  184

seq1  TTCCTGACTGAGGGTGGAGAGGG-ACCCTTGGCTCTGTGACCTCTCAACC  391
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCCTGACTGAGGGTGGAGAGGGAACCCTTGGCTCTGTGACCTCTCAACC  234

seq1  ATGATGGGCTGTATTCCCTGAAACTGTG-AACCAGCACAAGCTCTTTTCC  440
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGATGGGCTGTATTCCCTGAAACTGTGAAACCAGCACAAGCTCTTTTCC  284

seq1  CTTTTTCTTGTCAGGTGTCCCACACAACAGCAGGAGAAGTAACTAACATT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTGTCAGGTGTCCCACACAACAGCAGGAGAAGTAACTAACATT  334

seq1  CAGATATCTCGGTTACCTCTATGAATCTCCTGTTTTAGAAAATGTATGGG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATCTCGGTTACCTCTATGAATCTCCTGTTTTAGAAAATGTATGGG  384

seq1  TCTTGGGACTGGAGAGTTGGCTCAGCAGTTAAGAGCACTGGCTGCTGCTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGACTGGAGAGTTGGCTCAGCAGTTAAGAGCACTGGCTGCTGCTC  434

seq1  TTCCAGAGGACCTGGGCTTCAATTCCTAGTGCCCACATGACTGTTCACAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGGACCTGGGCTTCAATTCCTAGTGCCCACATGACTGTTCACAG  484

seq1  CTGGCTGTACTACCAATTCCAGAAGATCTGATACCTTTACAATCATACAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTACTACCAATTCCAGAAGATCTGATACCTTTACAATCATACAT  534

seq1  GCAGGCAAAACACCAATGAACATAAAATAAAAACAAATAAATCTTTAAAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAAAACACCAATGAACATAAAATAAAAACAAATAAATCTTTAAAA  584

seq1  AAAATGAATGGACACTCCTTTTTAGTTTTCTGAGACAGGGCTTCTCCATG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAATGGACACTCCTTTTTAGTTTTCTGAGACAGGGCTTCTCCATG  634

seq1  TATCCCAGGCTATCCTGGGACTCACTATAAAGACAAGGCTAGCCTCAAAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAGGCTATCCTGGGACTCACTATAAAGACAAGGCTAGCCTCAAAT  684

seq1  TTAGAGATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAAGTACAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAAGTACAT  734

seq1  CCCACCATGCCGGACAGGATACTTTTTTTTTAAAGACTAGGTTCATGAAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCATGCCGGACAGGATACTTTTTTTTTAAAGACTAGGTTCATGAAA  784

seq1  CATTTCGCTGTACGCGCTGGACTTTTTTTTATTGTTTGTTGGTTTTCCTA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCGCTGTACGCGCTGGACTTTTTTTTATTGTTTGTTGGTTTTCCTA  834

seq1  CTTATTTCTCCATTCTCTTCCCATGACATTAGTCTTGTAAGTTTTTTTTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCTCCATTCTCTTCCCATGACATTAGTCTTGTAAGTTTTTTTTT  884

seq1  TTTTGGTTTTTGTTTTTTAAATATAATCATTGGAGGCTAGAGAAATTGGC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTTTGTTTTTTAAATATAATCATTGGAGGCTAGAGAAATTGGC  934

seq1  TCAGCAGTTAAGAGCACTTTCTGCTCTTCCAGAAGATGCAGGTTCAGCAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGTTAAGAGCACTTTCTGCTCTTCCAGAAGATGCAGGTTCAGCAT  984

seq1  CCAGCATCCACAGAGCAGATCACAGCCATCCATAGCTACAGTCCAGGGGA  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCCACAGAGCAGATCACAGCCATCCATAGCTACAGTCCAGGGGA  1034

seq1  CCTGACACTGTCTTCTGACTATACATATAAAATAACAAATCTAAATAATG  1240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACTGTCTTCTGACTATACATATAAAATAACAAATCTAAATAATG  1084

seq1  TTTTAATCCAGATGTTATTTTGTGCTACAGCAAATGACTCCACAGCACAT  1290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCCAGATGTTATTTTGTGCTACAGCAAATGACTCCACAGCACAT  1134

seq1  GAGTGCTGGCTGCTCTTCCTGAATTC  1316
      ||||||||||||||||||||||||||
seq2  GAGTGCTGGCTGCTCTTCCTGAATTC  1160