BAC Information

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BAC

Clone NameB6Ng01-271K13
Chromosome12 (Build37)
Map Location 116,759,799 - 116,954,261
singlet/doubletdoublet
Overlap geneIgh, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634
Upstream geneEG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10
Downstream geneEG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271K13.bB6Ng01-271K13.g
ACCGA073682GA073683
length1,1491,090
definitionB6Ng01-271K13.b B6Ng01-271K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,759,799 - 116,760,940)(116,953,182 - 116,954,261)
sequence
gaattccaagcccatggtcagctcaaggactttctaggacgttggaacac
tggtgaaggcttagctatctcagaattcaatcttaaaaggcacttataat
aagataatactaaaaaagagcatgtggatccataaatcagactaactcgg
gaatagaatgtgtatatgtgttaaagagaacaccagactccaggaggaag
tttccatgaaactctctgcctcgtgagtggcttccaggtctctaggcctg
tcaagctgactcgactgaagtgtgtggcaccttaagaaatgttaaatcac
aattattcctctttgttcttatcagtattgatgtttcagaagttagagat
aataagatttctctaactttgatcaactttatgcagtggtttgttggaat
gaacatgattgaatatatggaaaacaagcttgagtagatgactgatttca
ttaaagaagtctatgccaaaataaatcaagttcctttcatgaataaaaca
tcttcatattttcagatgtttaaaagataaaaatatcaagttatgtccat
accataaaataagatcttagtacaaagttttattaacacaagaaagagaa
acgaatcccagaatgctgactgacatcagagggcctgaacccatagcata
agatgtgcaataagacctgcactgacaattaggttccttttccaggtggg
ttgttaattttaacatgactttttatctatgagtaaattatgtatcttga
aatagaagaatttctgacattgtcctcaggagaatcaaagatcatcatgt
acatcctcataagggaggaagggcccacagaaggcaaagattttgctata
tatgacacagaggctaagtagccagatttggatgaagtgaccatagtgct
agaaaaacaaatattgctgaatcctgaatattggaaagtcagacaagaga
ttcttcaaaacactgactatcatatctaaccaggatcacagatgttgaac
ttcacatgctttgtccctggagggcataaaaatgtgatataagccttata
atggaagaagaaattttcctgactttttcacatgaagccttgaaagtaat
ggtgggtccatgttccaataaatgttacagaacgagaaatgaacaacat
gaattcaccttcttttcatccttcccaagtcacacactaatggctggttt
atatttacatctcatgagattagatcttgtctctcctagcagacatcata
cataatttaaaggtgtgtttggttggtactttactccatgtacatcttca
atcacattcctcactccatcaacataaaacatgttttcctcacaaattaa
aaattgtgccatcattttcaatccaagcgatgaagaatttatgaaggatg
aattggtgtctccattttttttctaagaattgcttacactggaagccttt
cccctcacatgtcactgtgataaacagggagacccagtcattcctaaagc
actgattggaaatagattaaataaactctcaccttgaatatatctgagac
ctgaaattgtgaatactataaagccattcactgaaccttttgagtaagtg
agctattcctactttccaaaatattttataatttttttaccacttcattg
gcagggtgcttcacacctatatttatattatatatttagatgaattttat
agaatacataaaaattaattcttttttttcttctaaattgttaaatttat
tcatagagttacttgtatcattaaatagatgtagcatgtgcagttatatc
tcagtctctcctgtggttcagtctccagaccccacttagtaggaagacga
ctggcttccacacgttgtccactaacctccacaaaaattaattcttgtac
ctcacagtcaatacttattattagacttttaacctcagaaccagaactac
agcatgaacaagtgaaaaattcaagctgaatatcttcatccattgcagct
catacgccagtcataaatcaacatcatactttttattttcctccatggac
aaaacatttgaaatgcaatattctcttacctggttcgatatgatgctctc
tctctcagtagagtctgtttctgcatttctcatattcagaccagcaatac
ttgtacctctagcccttctgggctccttgtttcaaccctgaacagcctta
gccaggttccattaatcaattccatgaattcttttgtccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116759799_116760940
seq2: B6Ng01-271K13.b_48_1196

seq1  GAATTCCAAGCCCATGGTCAGCTCAAGGACTTTCTAGGACGTTGGAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCATGGTCAGCTCAAGGACTTTCTAGGACGTTGGAACAC  50

seq1  TGGTGAAGGCTTAGCTATCTCAGAATTCAATCTTAAAAGGCACTTATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGGCTTAGCTATCTCAGAATTCAATCTTAAAAGGCACTTATAAT  100

seq1  AAGATAATACTAAAAAAGAGCATGTGGATCCATAAATCAGACTAACTCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATACTAAAAAAGAGCATGTGGATCCATAAATCAGACTAACTCGG  150

seq1  GAATAGAATGTGTATATGTGTTAAAGAGAACACCAGACTCCAGGAGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAATGTGTATATGTGTTAAAGAGAACACCAGACTCCAGGAGGAAG  200

seq1  TTTCCATGAAACTCTCTGCCTCGTGAGTGGCTTCCAGGTCTCTAGGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGAAACTCTCTGCCTCGTGAGTGGCTTCCAGGTCTCTAGGCCTG  250

seq1  TCAAGCTGACTCGACTGAAGTGTGTGGCACCTTAAGAAATGTTAAATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTGACTCGACTGAAGTGTGTGGCACCTTAAGAAATGTTAAATCAC  300

seq1  AATTATTCCTCTTTGTTCTTATCAGTATTGATGTTTCAGAAGTTAGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCCTCTTTGTTCTTATCAGTATTGATGTTTCAGAAGTTAGAGAT  350

seq1  AATAAGATTTCTCTAACTTTGATCAACTTTATGCAGTGGTTTGTTGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATTTCTCTAACTTTGATCAACTTTATGCAGTGGTTTGTTGGAAT  400

seq1  GAACATGATTGAATATATGGAAAACAAGCTTGAGTAGATGACTGATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGATTGAATATATGGAAAACAAGCTTGAGTAGATGACTGATTTCA  450

seq1  TTAAAGAAGTCTATGCCAAAATAAATCAAGTTCCTTTCATGAATAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAGTCTATGCCAAAATAAATCAAGTTCCTTTCATGAATAAAACA  500

seq1  TCTTCATATTTTCAGATGTTTAAAAGATAAAAATATCAAGTTATGTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATATTTTCAGATGTTTAAAAGATAAAAATATCAAGTTATGTCCAT  550

seq1  ACCATAAAATAAGATCTTAGTACAAAGTTTTATTAACACAAGAAAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAAATAAGATCTTAGTACAAAGTTTTATTAACACAAGAAAGAGAA  600

seq1  ACGAATCCCAGAATGCTGACTGACATCAGAGGGCCTGAACCCATAGCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATCCCAGAATGCTGACTGACATCAGAGGGCCTGAACCCATAGCATA  650

seq1  AGATGTGCAATAAGACCTGCACTGACAATTAGGTTCCTTTTCCAGGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGCAATAAGACCTGCACTGACAATTAGGTTCCTTTTCCAGGTGGG  700

seq1  TTGTTAATTTTAACATGACTTTTTATCTATGAGTAAATTATGTATCTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAATTTTAACATGACTTTTTATCTATGAGTAAATTATGTATCTTGA  750

seq1  AATAGAAGAATTTCTGACATTGTCCTCAGGAGAATCAAAGATCATCATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGAATTTCTGACATTGTCCTCAGGAGAATCAAAGATCATCATGT  800

seq1  ACATCCTCATAAGGGAGGAAGGGCCCACAGAAGGCAAAGATTTTGCTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTCATAAGGGAGGAAGGGCCCACAGAAGGCAAAGATTTTGCTATA  850

seq1  TATGACACAGAGGCTAAGTAGCCAGATTTGGATGAAGTGACCATAGTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACACAGAGGCTAAGTAGCCAGATTTGGATGAAGTGACCATAGTGCT  900

seq1  AGAAAAACAAATATTGCTGAATCCTGAATATTGGAAAGTCAGACAAGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACAAATATTGCTGAATCCTGAATATTGGAAAGTCAGACAAGAGA  950

seq1  TTCTTCAAAACACTGACTATCATATCTAACCAGGATCACAGATGTTGAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAAAACACTGACTATCATATCTAACCAGGATCACAGATGTTGAAC  1000

seq1  TTCACATGCTTTGTCCCTGGAGGGCATAAAAATGTGATATAAGC--TATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  TTCACATGCTTTGTCCCTGGAGGGCATAAAAATGTGATATAAGCCTTATA  1050

seq1  ATGGAAGAAGAAATTTTTCCTGACTTTTTCACATGA--GCTTG-AAGTAA  1095
      ||||||||||||| ||||||||||||||||||||||   |||| ||||||
seq2  ATGGAAGAAGAAA-TTTTCCTGACTTTTTCACATGAAGCCTTGAAAGTAA  1099

seq1  TTGTGGGTCCATGT--CCATAAATG-TACAGACAGAGATATGAACAACAT  1142
      | ||||||||||||  | ||||||| ||||||  |||| |||||||||||
seq2  TGGTGGGTCCATGTTCCAATAAATGTTACAGAACGAGAAATGAACAACAT  1149

seq1: chr12_116953182_116954261
seq2: B6Ng01-271K13.g_66_1155 (reverse)

seq1  GGGACAAAAGA--TCATGGAA-TGA-TAATGGAACCTGGCTAA-GCTG-T  44
      |||||||||||  |||||||| ||| ||||||||||||||||| |||| |
seq2  GGGACAAAAGAATTCATGGAATTGATTAATGGAACCTGGCTAAGGCTGTT  50

seq1  CAGGTTTGAAACAA-GAG-CCAG-AGGGCTAGAGGTACAAGTATTGCTGG  91
      |||| ||||||||| ||| |||| ||||||||||||||||||||||||||
seq2  CAGGGTTGAAACAAGGAGCCCAGAAGGGCTAGAGGTACAAGTATTGCTGG  100

seq1  TCTTGAATATGAGAAATGCAGAAACAGACTCTACTGAGAGAGAGAGCATC  141
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TGAATATGAGAAATGCAGAAACAGACTCTACTGAGAGAGAGAGCATC  149

seq1  ATATCGAACCAGGTAAGAGAATATTGCATTTCAAATGTTTTGTCCATGGA  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGAACCAGGTAAGAGAATATTGCATTTCAAATGTTTTGTCCATGGA  199

seq1  GGAAA--TAAAAGTATGATGTTGATTTATGACTGGCGTATGAGCTGCAAT  239
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATAAAAAGTATGATGTTGATTTATGACTGGCGTATGAGCTGCAAT  249

seq1  GGATGAAGATATTCAGCTTGAATTTTTCACTTGTTCATGCTGTAGTTCTG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGATATTCAGCTTGAATTTTTCACTTGTTCATGCTGTAGTTCTG  299

seq1  GTTCTGAGGTTAAAAGTCTAATAATAAGTATTGACTGTGAGGTACAAGAA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGGTTAAAAGTCTAATAATAAGTATTGACTGTGAGGTACAAGAA  349

seq1  TTAATTTTTGTGGAGGTTAGTGGACAACGTGTGGAAGCCAGTCGTCTTCC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTGTGGAGGTTAGTGGACAACGTGTGGAAGCCAGTCGTCTTCC  399

seq1  TACTAAGTGGGGTCTGGAGACTGAACCACAGGAGAGACTGAGATATAACT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGTGGGGTCTGGAGACTGAACCACAGGAGAGACTGAGATATAACT  449

seq1  GCACATGCTACATCTATTTAATGATACAAGTAACTCTATGAATAAATTTA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCTACATCTATTTAATGATACAAGTAACTCTATGAATAAATTTA  499

seq1  ACAATTTAGAAGAAAAAAAAGAATTAATTTTTATGTATTCTATAAAATTC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTAGAAGAAAAAAAAGAATTAATTTTTATGTATTCTATAAAATTC  549

seq1  ATCTAAATATATAATATAAATATAGGTGTGAAGCACCCTGCCAATGAAGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAATATATAATATAAATATAGGTGTGAAGCACCCTGCCAATGAAGT  599

seq1  GGTAAAAAAATTATAAAATATTTTGGAAAGTAGGAATAGCTCACTTACTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAAAATTATAAAATATTTTGGAAAGTAGGAATAGCTCACTTACTC  649

seq1  AAAAGGTTCAGTGAATGGCTTTATAGTATTCACAATTTCAGGTCTCAGAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTCAGTGAATGGCTTTATAGTATTCACAATTTCAGGTCTCAGAT  699

seq1  ATATTCAAGGTGAGAGTTTATTTAATCTATTTCCAATCAGTGCTTTAGGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAGGTGAGAGTTTATTTAATCTATTTCCAATCAGTGCTTTAGGA  749

seq1  ATGACTGGGTCTCCCTGTTTATCACAGTGACATGTGAGGGGAAAGGCTTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGGGTCTCCCTGTTTATCACAGTGACATGTGAGGGGAAAGGCTTC  799

seq1  CAGTGTAAGCAATTCTTAGAAAAAAAATGGAGACACCAATTCATCCTTCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAAGCAATTCTTAGAAAAAAAATGGAGACACCAATTCATCCTTCA  849

seq1  TAAATTCTTCATCGCTTGGATTGAAAATGATGGCACAATTTTTAATTTGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTTCATCGCTTGGATTGAAAATGATGGCACAATTTTTAATTTGT  899

seq1  GAGGAAAACATGTTTTATGTTGATGGAGTGAGGAATGTGATTGAAGATGT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAACATGTTTTATGTTGATGGAGTGAGGAATGTGATTGAAGATGT  949

seq1  ACATGGAGTAAAGTACCAACCAAACACACCTTTAAATTATGTATGATGTC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGTAAAGTACCAACCAAACACACCTTTAAATTATGTATGATGTC  999

seq1  TGCTAGGAGAGACAAGATCTAATCTCATGAGATGTAAATATAAACCAGCC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGAGAGACAAGATCTAATCTCATGAGATGTAAATATAAACCAGCC  1049

seq1  ATTAGTGTGTGACTTGGGAAGGATGAAAAGAAGGTGAATTC  1080
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTGTGACTTGGGAAGGATGAAAAGAAGGTGAATTC  1090