BAC Information

Click to search

BAC

Clone NameB6Ng01-271K14
Chromosome12 (Build37)
Map Location 35,814,499 - 35,815,630
singlet/doubletsinglet
Overlap geneSnx13
Upstream geneHdac9, 4921508M14Rik, Prps1l1
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271K14.bB6Ng01-271K14.g
ACCGA073684GA073685
length1,0091,124
definitionB6Ng01-271K14.b B6Ng01-271K14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgaggactctttagagggtataaaattaccgggagtctattata
aataaggctgctatgaacatagtggagcatgtgtccttcttaacggttgg
gacattttctggatatatgcccaggagaggtattgcgggatcctccggta
gtactatgtccaattttctgaggaaccgccagactgatttccagagtggt
tgtacaagcttgcaatcccacagatgcctctcaacagaggaatggataca
gaaaatgtgatacatttacacaatggagtactactcagctattaaaaaga
atgagtttatgaaattcctaagcaaatggatggacctggagggcatcatc
ctgagtgaggtaacccaatcacaaatgaactcgcacaatatgtactcact
gataagtggatattagcccagaaacttaggatacccaagatataagatac
aatttgcaaaacacatgaaactcaagaagaacgaagaccaaagtgtggac
actttgccccttcttagaattgggaacaaaacacccatggaaggagttac
agagacaaaatttggagctgtgacgaaaggatggaccatctagtaattgc
catatccagggacccatcccataatcagcttccaaacgctgacaccattg
catacactagcaagattttgctgaaaggacccagatagagctgtctcttg
tgagactatgccggggtctagcaaacacagaagtggatgctcacagtcag
ctattggatggatcacagggcccccaatggaggagctggagaaagtaccc
aaggagctaaagggatctgcaaccctataggtggaacaacaatatgaact
aaccagtacccgggagctcttgtctttagctgcatatgtatcaaaagatg
gcctagtcggccatcactgcaaatagaggcccattggactgcaaactttt
atatgccccagtacaggggaacgccagggcccaaaaaggggagtgggtgg
gttagggag
gaattcagagatctgcctgtctctgcctcctgaatgtggggattaaaggc
ctgcaccactatgcccagctcagagtgcagaattctaagagatgccttat
gagactatttatgaagtatctatcacatttaaaacatgcaactatggaga
agattgcaactctcaaatataacataatatttattaaacagaacttcaca
agcatgagagtccactctacattgctcctacaaatacagggtttgtttta
aaacagacctaaaagggttctgaaaacagataggaaagaaacaaacttta
actatgaggcacaggagtaaatcccggagagatagcacaagtacaccctc
agcataatttatacaggggctgtctatataagatgccagctctcctcagt
tctgtgttctagtaacacaacattccaatcgaattttaacttaacacttc
taaccatggctaagaatgacttcaaaccacaacataaccttaaataaaaa
gttacatcaagcagagaaaggatgcttatcacttattccatctatgaatt
aactgttctacagatttttaaaaagagaaattaacaaaaatcaatggttt
ctaaggcatttgtcaagctgataaaagcctctcataaaacgcttgcagat
tatttaatgcaatgactacttggaggggtcttcagactgtattagtaact
tagaatacgatatgcaactaacctacaagtgttcctatttaaaatgaggg
ggcatatttaataaaaactgttatcaattctatagttaaaattaatacag
tcacaaaacagaaaataaggcaaatatcttcatgatagaaaactggaaca
catctctattgacatagaagattgcatcctgaatacaattactcaggaaa
taaagcatgaacatatgcacacgcatatatgtgtgtgtacatatatacac
atatgtatagatagatacacacataattactatttttaaagtctatatat
agaatttattttttaaaacattcaacttaaaaatgtagcatccattaaga
tgtgaatttaccatctatcatacaactctatttatacttcttagtatggt
tgattaatttgcatcaattcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35814499_35815630
seq2: B6Ng01-271K14.g_64_1187 (reverse)

seq1  TTTTGAATTGATGCAAAATAATCAACAATACTTAGGAGTTATAAATAGGA  50
      ||||||||||||||||| |||||||| ||||| || || |||||||| ||
seq2  TTTTGAATTGATGCAAATTAATCAACCATACTAAGAAG-TATAAATA-GA  48

seq1  GTTTGTATGATTAGGATGTTAAATTTCAACATCTTAATGGATGCTAACAT  100
      | |||||||||   |||| ||||||   ||||||||||||||||| ||||
seq2  G-TTGTATGAT--AGATGGTAAATT--CACATCTTAATGGATGCT-ACAT  92

seq1  TTTTAAGTTGAATGTTTT-AAAAATAAATTCTTATATATAGACTTT-AAA  148
      |||||||||||||||||| |||||||||||| |||||||||||||| |||
seq2  TTTTAAGTTGAATGTTTTAAAAAATAAATTC-TATATATAGACTTTAAAA  141

seq1  ATAGTAAATTATGTGTGTATCTATCTATACATATGTGTATATATGTACAC  198
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGT-AATTATGTGTGTATCTATCTATACATATGTGTATATATGTACAC  190

seq1  ACACATATATGCGTGTGCATATGTTCATGCTTTATTTCCTGAGTAATTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATATGCGTGTGCATATGTTCATGCTTTATTTCCTGAGTAATTGT  240

seq1  ATTCAGGATGCAATCTTCTATGTCAATAGAGATGTGTTCCAGTTTTCTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGATGCAATCTTCTATGTCAATAGAGATGTGTTCCAGTTTTCTAT  290

seq1  CATGAAGATATTTGCCTTATTTTCTGTTTTGTGACTGTATTAATTTTAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATATTTGCCTTATTTTCTGTTTTGTGACTGTATTAATTTTAAC  340

seq1  TATAGAATTGATAACAGTTTTTATTAAATATGCCCCCTCATTTTAAATAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAATTGATAACAGTTTTTATTAAATATGCCCCCTCATTTTAAATAG  390

seq1  GAACACTTGTAGGTTAGTTGCATATCGTATTCTAAGTTACTAATACAGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTGTAGGTTAGTTGCATATCGTATTCTAAGTTACTAATACAGTC  440

seq1  TGAAGACCCCTCCAAGTAGTCATTGCATTAAATAATCTGCAAGCGTTTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACCCCTCCAAGTAGTCATTGCATTAAATAATCTGCAAGCGTTTTA  490

seq1  TGAGAGGCTTTTATCAGCTTGACAAATGCCTTAGAAACCATTGATTTTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGCTTTTATCAGCTTGACAAATGCCTTAGAAACCATTGATTTTTG  540

seq1  TTAATTTCTCTTTTTAAAAATCTGTAGAACAGTTAATTCATAGATGGAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTCTTTTTAAAAATCTGTAGAACAGTTAATTCATAGATGGAAT  590

seq1  AAGTGATAAGCATCCTTTCTCTGCTTGATGTAACTTTTTATTTAAGGTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATAAGCATCCTTTCTCTGCTTGATGTAACTTTTTATTTAAGGTTA  640

seq1  TGTTGTGGTTTGAAGTCATTCTTAGCCATGGTTAGAAGTGTTAAGTTAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGGTTTGAAGTCATTCTTAGCCATGGTTAGAAGTGTTAAGTTAAA  690

seq1  ATTCGATTGGAATGTTGTGTTACTAGAACACAGAACTGAGGAGAGCTGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGATTGGAATGTTGTGTTACTAGAACACAGAACTGAGGAGAGCTGGC  740

seq1  ATCTTATATAGACAGCCCCTGTATAAATTATGCTGAGGGTGTACTTGTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATATAGACAGCCCCTGTATAAATTATGCTGAGGGTGTACTTGTGC  790

seq1  TATCTCTCCGGGATTTACTCCTGTGCCTCATAGTTAAAGTTTGTTTCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCCGGGATTTACTCCTGTGCCTCATAGTTAAAGTTTGTTTCTTT  840

seq1  CCTATCTGTTTTCAGAACCCTTTTAGGTCTGTTTTAAAACAAACCCTGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTGTTTTCAGAACCCTTTTAGGTCTGTTTTAAAACAAACCCTGTA  890

seq1  TTTGTAGGAGCAATGTAGAGTGGACTCTCATGCTTGTGAAGTTCTGTTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGGAGCAATGTAGAGTGGACTCTCATGCTTGTGAAGTTCTGTTTA  940

seq1  ATAAATATTATGTTATATTTGAGAGTTGCAATCTTCTCCATAGTTGCATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATTATGTTATATTTGAGAGTTGCAATCTTCTCCATAGTTGCATG  990

seq1  TTTTAAATGTGATAGATACTTCATAAATAGTCTCATAAGGCATCTCTTAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGTGATAGATACTTCATAAATAGTCTCATAAGGCATCTCTTAG  1040

seq1  AATTCTGCACTCTGAGCTGGGCATAGTGGTGCAGGCCTTTAATCCCCACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGCACTCTGAGCTGGGCATAGTGGTGCAGGCCTTTAATCCCCACA  1090

seq1  TTCAGGAGGCAGAGACAGGCAGATCTCTGAATTC  1132
      ||||||||||||||||||||||||||||||||||
seq2  TTCAGGAGGCAGAGACAGGCAGATCTCTGAATTC  1124